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GenomicsA Cancer Cell-Line Titration Series for Evaluating Somatic Classification
Accurate detection of somatic single nucleotide variants and small insertions and deletions from DNA sequencing experiments of tumour-normal pairs is a challenging task. Tumour samples are often contaminated with normal cells confounding the available evidence for the somatic variants. Furthermore...
EGAS00001001016 | EGA
UnknownCUP study: protocol for a comparative analysis of centralised waitlist effectiveness, policies and innovations for connecting unattached patients to primary care providers.
Not available
S-EPMC8905966 | biostudies-literature
GenomicsA comprehensive assessment of somatic mutation detection in cancer using whole genome sequencing
As whole genome sequencing for cancer genome analysis becomes a clinical tool, a full understanding of the variables affecting sequencing analysis output is required. Using tumor-normal sample pairs from two different types of cancer, chronic lymphocytic leukemia and medulloblastoma, we conducted a ...
EGAS00001001539 | EGA
GenomicsCPC-GENE Prostate Cancer Heterogeneity Study
Herein we describe a molecular portrait of potentially curable, Gleason 7 and intermediate risk prostate cancer based on genome-wide CNV profiles of 96 patients, and subsequent whole-genome sequencing of 28 tumours from 10 patients, using DNA quantities that are achievable in diagnostic biopsies (50...
EGAS00001000549 | EGA
GenomicsCell-line Mixing Experiment Verification Data - samples
Description not provided
EGAD00001001044 | EGA
GenomicsCell-line Mixing Experiment Sequencing Data - samples
Description not provided
EGAD00001001043 | EGA
GenomicsICGC Benchmark 2 (Medulloblastoma) - samples
Raw fastq files for sequence data generated at 5 sequencing centers from a Medulloblastoma sample and matching blood normal control.
EGAD00001001859 | EGA
GenomicsCPCG_Het_Study - samples
Aligned Sequence (bam format), Duplicates removed
EGAD00001001329 | EGA
GenomicsDynamics of genomic clones in breast cancer patient xenografts at single cell resolution
Human cancers, including breast cancers, are comprised of clones differing in mutation content that evolve dynamically in space and time following principles of Darwinian evolution, underpinning important emergent features such as drug resistance and metastasis. Human breast cancer xenoengraftment i...
EGAS00001000952 | EGA
GenomicsCPCG Het Study, Raw Fastq Sequence - samples
Raw sequence data, fastq format
EGAD00001002885 | EGA
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