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Unknown
(175002)
Genomics
(2814)
Transcriptomics
(2333)
Proteomics
(1252)
Genomic
(1015)
Metabolomics
(257)
Models
(39)
Other
(15)
Clinical
(9)
Methylation profiling
(5)
Multiomics
(2)
Organisms
Homo sapiens
(1466)
Mus musculus
(663)
Rattus norvegicus
(118)
Arabidopsis thaliana
(49)
Gallus gallus
(40)
Bos taurus
(31)
Drosophila melanogaster
(30)
Saccharomyces cerevisiae
(26)
Escherichia coli
(21)
Yersinia pestis
(19)
Macaca mulatta
(18)
Sus scrofa
(15)
Glycine max
(12)
Oryza sativa
(8)
Canis lupus familiaris
(7)
Epinephelus fuscoguttatus x Epinephelus lanceolatus
(6)
Pimephales promelas
(6)
Streptococcus mutans
(6)
Toxoplasma gondii
(6)
Schizosaccharomyces pombe
(6)
Danio rerio
(6)
Oryctolagus cuniculus
(5)
Zea mays
(5)
Nicotiana tabacum
(5)
Streptococcus mutans UA159
(4)
Enterococcus faecalis OG1RF
(4)
Chlamydomonas reinhardtii
(4)
Euarchontoglires
(1)
Dictyostelium discoideum
(1)
Rattus
(1)
Organisms
Homo sapiens
(1057)
Mus musculus
(588)
Gallus gallus
(20)
Saccharomyces cerevisiae
(19)
Rattus norvegicus
(18)
soil metagenome
(14)
Caenorhabditis elegans
(13)
Wolfiporia cocos MD-104 SS10
(11)
Arabidopsis thaliana
(7)
Streptococcus sp. 'group A'
(6)
Escherichia coli
(6)
Streptococcus pyogenes
(5)
Tursiops truncatus
(4)
Streptococcus dysgalactiae subsp. equisimilis
(4)
Macaca mulatta
(4)
Drosophila melanogaster
(4)
Bos taurus
(4)
Saimiri boliviensis
(3)
Streptococcus pneumoniae D39
(3)
Pseudomonas aeruginosa
(3)
Oryza sativa
(3)
gut metagenome
(3)
Sus scrofa
(3)
Streptococcus mutans
(3)
Oncorhynchus mykiss
(2)
Ananas comosus
(2)
Burkholderia gladioli
(2)
Populus nigra
(2)
freshwater metagenome
(2)
wastewater metagenome
(2)
Repository
ENA
(2448)
biostudies-arrayexpress
(2291)
pride
(1041)
dbGaP
(1015)
MetaboLights
(246)
geo
(227)
EGA
(204)
MassIVE
(135)
BioModels
(36)
jPOST
(23)
PeptideAtlas
(16)
iProX
(13)
PanoramaPublic
(11)
MetabolomicsWorkbench
(7)
EVA
(6)
PAXDB
(5)
GNPS
(4)
GPMDB
(4)
FAIRDOMHub
(3)
Tissue
Cell culture
(183)
Epithelial cell
(77)
Brain
(54)
Liver
(40)
Permanent cell line cell
(38)
Kidney
(35)
Blood plasma
(27)
Fibroblast
(24)
Heart
(24)
Lung
(23)
Blood
(20)
Blood cell
(17)
B cell
(16)
Others
(15)
Plant cell
(15)
Bone marrow
(14)
Embryonic stem cell
(13)
Leaf
(13)
Whole body
(13)
Colon
(12)
Early embryonic cell
(12)
Embryo
(12)
Hepatocyte
(12)
T cell
(11)
Blood serum
(10)
Blood
(3)
Cultured cells
(2)
Adipose tissue
(1)
Epithelial cells
(1)
Lung
(1)
Disease
Breast cancer
(33)
Alzheimer's disease
(9)
Normal
(9)
Neuroblastoma
(3)
Botulism
(2)
Infiltrating ductal carcinoma
(2)
Colorectal cancer
(2)
Gastric cancer
(2)
Adenocarcinoma
(2)
Parkinson's disease
(1)
Radiation-induced DNA damage
(1)
LPS-induced acute lung injury
(1)
Acute erythroid leukemia
(1)
Autoimmune disorder
(1)
Myeloid neoplasm
(1)
Post-stasis
(1)
Primary tumor
(1)
AIDS-KS, HIV+, nodular (late) stage
(1)
Follicular lymphoma
(1)
Liposarcoma
(1)
Represent tolerant CD4+ T cells that have not been activated
(1)
Non-CF
(1)
HIV-Tuberculosis with Immune Reconstitution Inflammatory Syndrome
(1)
Colon carcinoma
(1)
Neurologically healthy control
(1)
Cirrhosis
(1)
Small cell lung carcinoma
(1)
NGT
(1)
Normal
(1)
Primary nodular malignant melanoma
(1)
Technology Type
Mass Spectrometry
(1048)
Shotgun proteomics
(552)
Bottom-up proteomics
(200)
Mass spectrometry
(196)
Affinity purification coupled with mass spectrometry proteomics
(150)
Data-dependent acquisition
(99)
Gel-based experiment
(63)
Data-independent acquisition
(46)
Top-down proteomics
(38)
Chemical cross-linking coupled with mass spectrometry proteomics
(34)
Mass spectrometry assay
(32)
SWATH MS
(29)
NMR spectroscopy
(19)
SRM/MRM
(18)
Illumina 15K
(8)
All-ion fragmentation
(8)
ESI
(7)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000
(2)
Illumina HiSeq 2000, Illumina Genome Analyzer IIx
(2)
Illumina HiSeq 2500
(2)
NMR spectroscopy assay
(2)
Human Cardio Metabochip
(1)
Illumina HiSeq 2000, Illumina Infinium HumanMethylation450 BeadChip, Affymetrix expression array, ILLUMINA
(1)
Illumina HiSeq 2000, HumanMethylation450k Bead Chip - Genome Studio, Illumina Genome Analyzer IIx
(1)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0
(1)
Illumina HiSeq 2500, Illumina HiSeq 2000
(1)
AB SOLiD System 3.0
(1)
Life Tech - Solid
(1)
Illumina HiSeq 2000
(1)
Illumina HiSeq 2000, ILLUMINA
(1)
Instrument Platform
Illumina HiSeq 2500
(25)
Illumina HiSeq 4000
(24)
Illumina HiSeq 2000
(21)
Illumina NovaSeq 6000
(20)
NextSeq 500
(17)
HiSeq X Ten
(8)
Illumina MiSeq
(6)
-
(6)
GenePix 4000B [Axon Instruments]
(5)
NextSeq 550
(4)
Scanning hardware
(3)
Illumina HiSeq 1000
(3)
BD Influx sorter
(2)
Agilent Bravo NGS workstation, Microlab STAR automated liquid handler (Hamilton Robotics), PCR machine (MJ Research Peltier Thermal Cycler)
(2)
Scanning of was performed on an Axon 4000B scanner
(2)
454 GS FLX+
(2)
G2565AA DNA microarray scanner [Agilent]
(2)
DNA Microarray Scanner BA [Agilent Technologies]
(2)
Illumina Genome Analyzer II
(2)
Illumina NovaSeq X
(2)
None
(2)
NextSeq 2000
(2)
BGISEQ-500
(2)
Illumina HiSeq 1500
(2)
Illumina DNA Prep sample preparation kits (Illumina Inc., San Diego, CA, USA). Final libraries concentrations and size were assessed with Quant-IT DNA Assay Kit and Agilent 4200 Tapestation System (Agilent Technologies, Milan, Italy),
(1)
QIAamp DNA minikit, Qiagen, Germany
(1)
Standard laboratory equipment for RNA library construction
(1)
Agilent Bioanalyser for RNA quality control
(1)
Laboratory greezer (-80C storage) and dry ice for snap-freezing
(1)
N/C
(1)
Publication Date
2010
(324)
2013
(314)
2014
(305)
2015
(283)
2012
(263)
2011
(245)
2025
(232)
2016
(216)
2022
(205)
2026
(190)
2023
(183)
2021
(182)
2024
(176)
2020
(152)
2018
(136)
2019
(125)
2009
(123)
2008
(117)
2017
(87)
2007
(73)
2005
(48)
2006
(30)
2004
(20)
2003
(2)
2002
(2)
2001
(1)
UNIPROT ID/AC
P01008
(3)
P10646
(3)
P12259
(3)
P00451
(3)
P00740
(3)
P00742
(3)
P08709
(3)
P13726
(3)
P00734
(3)
P28482
(2)
Q02750
(2)
P04049
(2)
S5S2F2
(1)
Q9BZL4
(1)
A4QPA9
(1)
Q23917
(1)
Q54QB1
(1)
Q01386
(1)
P13773
(1)
P20936
(1)
P98077
(1)
Q07889
(1)
P0DP23
(1)
P37840
(1)
P30613
(1)
P09467
(1)
P08237
(1)
P35558
(1)
P01112
(1)
P01137
(1)
ENSEMBL ID
ENSG00000247315
(10)
ENSG00000170477
(7)
ENSG00000147251
(2)
ENSG00000204131
(2)
CHEBI ID
CHEBI:16113
(21)
CHEBI:27823
(16)
CHEBI:15361
(3)
CHEBI:16480
(2)
CHEBI:29034
(2)
CHEBI:29033
(2)
CHEBI:18021
(2)
CHEBI:15379
(2)
CHEBI:29108
(2)
CHEBI:61304
(1)
CHEBI:25212
(1)
CHEBI:58216
(1)
CHEBI:37636
(1)
CHEBI:37635
(1)
CHEBI:37634
(1)
CHEBI:37632
(1)
CHEBI:58235
(1)
CHEBI:24859
(1)
CHEBI:59908
(1)
CHEBI:16759
(1)
CHEBI:52288
(1)
CHEBI:168308
(1)
CHEBI:8927
(1)
CHEBI:793340
(1)
CHEBI:47830
(1)
CHEBI:37480
(1)
CHEBI:78682
(1)
CHEBI:78697
(1)
CHEBI:57627
(1)
CHEBI:58414
(1)
Metabolite Name
Taurine
(39)
Creatine
(39)
Creatinine
(36)
Choline
(34)
Hypoxanthine
(30)
Glycine
(28)
Valine
(28)
Adenosine
(28)
Inosine
(27)
Glycine
(25)
L-Histidine
(25)
Alanine
(25)
L-Phenylalanine
(25)
Betaine
(24)
Succinic acid
(23)
Adenine
(23)
Leucine
(22)
Proline
(22)
Phenylalanine
(22)
L-Glutamine
(22)
Isoleucine
(22)
Uridine
(22)
L-Glutamic acid
(21)
Glucose
(21)
Xanthine
(21)
Uracil
(20)
Glycerophosphocholine
(20)
Tryptophan
(20)
Ornithine
(19)
Methionine
(19)
First Public Date
2014
(353)
2024
(322)
2026
(246)
2023
(222)
2025
(220)
2022
(176)
2020
(166)
2021
(143)
2019
(137)
2017
(129)
2018
(102)
2013
(92)
2015
(75)
2016
(65)
Modelling Approach
Ordinary differential equation model
(23)
Computational model
(7)
Constraint-based model
(2)
Metabolic network
(1)
Study status
Completed
(6)
Active, not recruiting
(1)
Not provided
(1)
Recruiting
(1)
Lab affiliation
Center for Structural Biology, Center for Cancer Research, National Cancer Institute (NCI), National Institutes of Health, Frederick, MD 21702-1201, USA
(12)
J. Craig Venter Institute, Rockville, MD 20850
(12)
Bioplatforms Australia
(7)
Department of Leukemia, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX
(7)
733 N. Broadway Miller Research Building room 527 Johns Hopkins University Baltimore, MD 21205
(5)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA
(5)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720
(5)
Assistant Professor Department of Medicine, Division of Endocrinology, Metabolism, and Nutrition Department of Pharmacology and Cancer Biology Duke University Medical Center
(4)
Chemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA
(4)
Department of Cardiovascular Medicine, Center for Circadian Metabolism and Cardiovascular Disease, Southwest Hospital, Army Medical University; Chongqing, China.
(4)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA
(4)
Experimental Radiation Oncology, MD Anderson Cancer Center, Houston, TX, USA
(4)
Moffitt Cancer Center Tampa, FL, USA
(4)
Rochester Institute of Technology
(4)
Thoracic Oncology Moffitt Cancer Center Tampa, FL, USA
(4)
Center of Human and Molecular Biology (ZHMB), Saarland University School of Medicine, Homburg, Germany
(3)
Chemistry Department, University of Minnesota
(3)
DZNE Munich, Neuroproteomics, Feodor-Lynen-Str. 17, 81377 München, Germany
(3)
Department of Genome Sciences, University of Washington, Seattle
(3)
Department of Molecular Biology and Genetics, Aarhus University, Denmark
(3)
Division of Maternal Fetal Medicine Department of Obstetrics and Gynecology Oregon Health & Science University 3181 SW Sam Jackson Park Road, Mail Code L-458, Portland, OR, 97239, USA
(3)
J. Craig Venter Institute 9605 Medical Center Dr. Rockville, MD 20850
(3)
Medical University of Innsbruck - Biocenter, Division of Genomics & RNomics
(3)
Moffitt Cancer Center
(3)
Sequence database group
(3)
The University of Texas MD Anderson Cancer Center
(3)
University of Aberdeen
(3)
University of Edinburgh
(3)
1) Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA 2) Proteomics Core Facility, Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA 3) Metabolomics Core Facility, Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA
(2)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands
(2)
Tags
pathogen
(74)
pathogen:bacterium
(68)
xref:PubMed:38458188
(14)
xref:PubMed:42339622
(10)
xref:PubMed:31231679
(9)
xref:PubMed:24525232
(8)
xref:PubMed:27111721
(7)
xref:PubMed:40089460
(7)
xref:PubMed:40080526
(7)
xref:PubMed:42465318
(7)
xref:PubMed:38451249
(6)
xref:PubMed:39476839
(6)
xref:PubMed:37055414
(6)
xref:PubMed:32341020
(6)
xref:PubMed:24553445
(6)
xref:PubMed:12119410
(6)
xref:PubMed:11257097
(6)
xref:PubMed:37225980
(6)
xref:PubMed:41202811
(6)
xref:PubMed:38574731
(5)
xref:PubMed:35537038
(5)
xref:PubMed:32521509
(5)
xref:PubMed:32202512
(5)
xref:PubMed:29535300
(5)
xref:PubMed:35241842
(5)
xref:PubMed:24875481
(5)
xref:PubMed:25877919
(5)
xref:PubMed:38316746
(5)
xref:PubMed:27789274
(5)
xref:PubMed:40907495
(5)
Keyword
Colorectal adenocarcinoma
(2)
MDCT
(1)
Diffusion
(1)
Weighted
(1)
3T
(1)
Biomarker determination
(1)
Tumor tissue
(1)
Treatment protocols
(1)
Odette Cancer Centre at Sunnybrook Health Sciences Centre
(1)
Toronto
(1)
Ontario
(1)
Non-technical skills
(1)
Qualitative research
(1)
Assessment
(1)
CT
(1)
Gastrointestinal endoscopy
(1)
Endoscopic biopsy
(1)
Genes
(1)
Cancer Prevention
(1)
Precancerous colorectal polyps
(1)
Canned beans
(1)
Stool samples
(1)
Resection
(1)
Syndrome Registry
(1)
Biomarkers
(1)
Endoscopy
(1)
Metastases
(1)
HNPCC
(1)
Questionnaire
(1)
Liver
(1)
IsPrivate
False
(36)
Model Flag
Non Kinetic
(2)
Submitter Keywords
Ersilia
(7)
Machine Learning Model
(7)
FAIR-AIML
(5)
Immuno-oncology
(2)
Classification
bacteria
(68)
viruses
(5)
protozoa
(1)
Modification
Not available
(9)
15.994915
(7)
57.021464
(7)
4x(15)N labeled L-arginine
(3)
71.037114
(3)
N6
(3)
2x(15)N labeled L-lysine
(2)
79.966331
(2)
N6-dimethyl-L-lysine
(2)
+3amu)
(1)
-17.026549
(1)
-18.010565
(1)
227.126991
(1)
4-tetrahydrothiazine-3-carboxylic acid
(1)
42.010565
(1)
4x(2)H labeled dimethylated residue
(1)
9.030194
(1)
Study type
Transcription profiling by array
(1546)
RNA-seq of coding RNA
(229)
ChIP-seq
(93)
Methylation profiling by array
(62)
Unknown experiment type
(55)
Comparative genomic hybridization by array
(54)
Transcription profiling by RT-PCR
(51)
RNA-seq of non coding RNA
(33)
Other
(24)
Methylation profiling by high throughput sequencing
(23)
MicroRNA profiling by array
(14)
DNA-seq
(13)
RNA-seq of coding RNA from single cells
(12)
ChIP-chip by array
(11)
ChIP-chip by tiling array
(10)
Proteomic profiling by array
(8)
Transcription profiling by tiling array
(7)
Transcription profiling by SAGE
(5)
Genotyping by array
(5)
Cell line - High-throughput sequencing
(4)
RNA-seq of total RNA
(4)
Cell line - One-color microarray
(3)
Human - One-color microarray
(3)
Animal - High-throughput sequencing
(3)
RNAi profiling by array
(3)
MicroRNA profiling by high throughput sequencing
(2)
Genotyping by high throughput sequencing
(2)
Baseline
(1)
MeDIP-seq
(1)
Human - Methylation microarray
(1)
Release Date
2022
(17203)
2021
(16396)
2023
(15474)
2025
(14372)
2024
(13812)
2020
(13624)
2019
(11511)
2018
(10783)
2017
(9492)
2016
(9228)
2015
(8183)
2014
(7162)
2013
(5554)
2012
(4819)
2011
(4276)
2010
(3684)
2009
(2903)
2008
(2177)
2026
(1813)
2007
(1334)
2006
(1036)
2005
(709)
2004
(440)
2003
(325)
2002
(271)
2001
(211)
2000
(196)
1999
(108)
1998
(100)
1997
(70)
Location
United States
(6)
Canada
(2)
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Wolfiporia cocos MD-104 SS10
Wolfiporia cocos MD-104 SS10 transcriptome
PRJNA586632
|
ENA
Cite
Xylella fastidiosa Mul-MD
Xylella fastidiosa Mul-MD Genome sequencing and assembly
PRJNA219739
|
ENA
Cite
Novosphingobium sp. MD-1
Novosphingobium sp. MD-1
PRJDB3604
|
ENA
Cite
Penicillium expansum strain:MD-8
Penicillium expansum MD-8 Genome sequencing
PRJNA255747
|
ENA
Cite
Bacillus sp. MD-5
Bacillus sp. MD-5 Genome sequencing
PRJNA389650
|
ENA
Cite
Hydnomerulius pinastri MD-312
Hydnomerulius pinastri MD-312 Genome sequencing and assembly
PRJNA207871
|
ENA
Cite
Transcription profiling of Smarce1- MD (R42A) and Smarce1- MD mouse embryonic body
Transcription profiling of Smarce1- MD (R42A) and Smarce1- MD mouse embryonic body
PRJNA894709
|
ENA
Cite
Wolfiporia cocos MD-104 SS10
Wolfiporia cocos MD-104 genome sequencing
PRJNA52943
|
ENA
Cite
Limosilactobacillus reuteri strain:MD IIE-43
Limosilactobacillus reuteri strain:MD IIE-43 Genome sequencing and assembly
PRJNA373841
|
ENA
Cite
Transcription profiling of Smarce1- MD (R42A) and Smarce1- MD mESCs with BMP4 rescue.
Transcription profiling of Smarce1- MD (R42A) and Smarce1- MD mESCs with BMP4 rescue.
PRJNA894701
|
ENA
Cite
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