Mdr - OmicsDI

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Unknown (7201)
Genomics (1358)
Transcriptomics (235)
Proteomics (64)
Metabolomics (33)
Models (2)
Genomic (2)
Other (1)

Organisms

Homo sapiens (130)
Mus musculus (61)
Candida albicans (10)
Mycobacterium tuberculosis H37Rv (8)
Mycobacterium tuberculosis (7)
Saccharomyces cerevisiae (7)
Arabidopsis thaliana (6)
Salmonella enterica (4)
Caulobacter vibrioides (4)
Rattus norvegicus (3)
Klebsiella pneumoniae (3)
Acinetobacter baumannii (3)
Zymoseptoria tritici (2)
Lactococcus lactis (2)
Escherichia coli (2)
Canis lupus familiaris (2)
Burkholderia pseudomallei K96243 (1)
Streptococcus pyogenes (1)
synthetic construct (1)
Hordeum vulgare (1)
Caenorhabditis elegans (1)
Plasmodium falciparum (1)
Drosophila melanogaster (1)
Danio rerio (1)
Salmonella enterica subsp. enterica serovar Typhi (1)
Lactococcus cremoris subsp. cremoris MG1363 (1)
Enterococcus faecium (1)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. D23580 (1)
Caulobacter vibrioides NA1000 (1)

Organisms

Acinetobacter baumannii (77)
Klebsiella pneumoniae (71)
Escherichia coli (64)
Mycobacterium tuberculosis (43)
Pseudomonas aeruginosa (40)
Homo sapiens (39)
Mus musculus (17)
Proteus mirabilis (11)
Salmonella enterica subsp. enterica serovar Typhimurium (9)
Bacteria (9)
Salmonella enterica (8)
Mycobacterium tuberculosis H37Rv (6)
Enterococcus faecium (6)
Streptococcus pneumoniae (5)
Salmonella enterica subsp. enterica (5)
Vibrio cholerae (5)
Klebsiella pneumoniae subsp. pneumoniae (5)
Caulobacter vibrioides (4)
Enterobacter cloacae (4)
Staphylococcus aureus (4)
Mycobacterium tuberculosis subsp. tuberculosis (3)
Botrytis cinerea (3)
Klebsiella quasipneumoniae subsp. similipneumoniae (3)
Aeromonas caviae (3)
Enterococcus faecalis (3)
Serratia marcescens (3)
Salmonella enterica subsp. enterica serovar Typhi (3)
Acinetobacter baumannii ABIsac_ColiS (2)
Acinetobacter baumannii MDR-ZJ06 (2)
Acinetobacter baumannii UH9907 (2)

Repository

ENA (1337)
biostudies-arrayexpress (173)
geo (77)
pride (35)
MetaboLights (17)
GNPS (15)
jPOST (13)
iProX (10)
EGA (6)
MassIVE (6)
BioModels (2)
dbGaP (2)
EVA (1)
MetabolomicsWorkbench (1)

Tissue

Cell culture (7)
Seaweed (1)
Latex (1)
Embryonic stem cell (1)
Blood serum (1)
Prokaryotic cell (1)
Brain (1)
Stem cell (1)
Permanent cell line cell (1)

Disease

Chronic myeloid leukemia (3)
Early stage liver carcinogenesis (1)
Renal cell carcinoma (1)
Neuroblastoma (1)
Multidrug-resistant tuberculosis (1)
Acinetobacter infectious disease (1)
Candidiasis (1)
Tuberculosis (1)
Malignant neoplasm of ovary (1)
Breast cancer (1)

Technology Type

Mass Spectrometry (36)
Shotgun proteomics (15)
Mass spectrometry (10)
Data-dependent acquisition (9)
Bottom-up proteomics (9)
Mass spectrometry assay (7)
Affinity proteomics (2)
SWATH MS (2)
Data-independent acquisition (2)
Gel-based experiment (2)
Affinity purification coupled with mass spectrometry proteomics (2)
AB SOLiD 4 System (1)
ESI (1)
MSE (1)
SRM/MRM (1)
Top-down proteomics (1)

Instrument Platform

Impact (10)
Illumina NovaSeq 6000 (7)
MicrOTOF-Q II (5)
Liquid Chromatography MS - negative - reverse phase (4)
Liquid Chromatography MS - alternating - reverse phase (3)
Liquid Chromatography MS - positive - reverse phase (3)
Illumina HiSeq 2500 (2)
Orbitrap Fusion Lumos (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - positive - hilic (2)
Illumina NovaSeq X (1)
Ion Torrent Proton (1)
DNBSEQ-T7 (1)
NextSeq 550 (1)
Illumina HiSeq 3000 (1)
Illumina HiSeq 4000 (1)
Illumina HiSeq X Ten, Illumina HiSeq 2000 (1)
Compact ESI-Q-TOF system (Bruker, Germany) (1)
Orbitrap Ascend (1)
Orbitrap Eclipse (1)
Q Exactive (1)
LTQ Orbitrap (1)
Liquid Chromatography MS – NEG (1)
Liquid Chromatography MS – POS (1)
LCMS-IT-TOF (Shimadzu) (1)
MS Imaging - negative (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - positive - HILIC (1)
Liquid Chromatography MS - positive - reverse-phase (1)

Publication Date

2015 (32)
2013 (30)
2025 (25)
2010 (25)
2023 (24)
2014 (22)
2017 (20)
2011 (19)
2026 (18)
2024 (15)
2022 (15)
2016 (15)
2008 (14)
2021 (13)
2009 (12)
2020 (10)
2012 (7)
2018 (6)
2007 (6)
2005 (5)
2006 (3)
2019 (3)
2027 (1)

CHEBI ID

CHEBI:16449 (4)
CHEBI:15741 (4)
CHEBI:22660 (4)
CHEBI:28300 (4)
CHEBI:18012 (3)
CHEBI:16335 (3)
CHEBI:15428 (3)
CHEBI:6650 (3)
CHEBI:30915 (3)
CHEBI:18237 (3)
CHEBI:25017 (3)
CHEBI:29016 (3)
CHEBI:78320 (3)
CHEBI:15345 (2)
CHEBI:15531 (2)
CHEBI:16356 (2)
CHEBI:17150 (2)
CHEBI:16828 (2)
CHEBI:15467 (2)
CHEBI:30887 (2)
CHEBI:30769 (2)
CHEBI:15996 (2)
CHEBI:17552 (2)
CHEBI:15422 (2)
CHEBI:16761 (2)
CHEBI:17489 (2)
CHEBI:16027 (2)
CHEBI:17345 (2)
CHEBI:16856 (2)
CHEBI:17858 (2)

Metabolite Name

Adenosine (7)
Benzoic acid (6)
Alanine (6)
Glutamine (6)
Creatine (6)
Sarcosine (5)
Hypoxanthine (5)
Glycine (5)
Inosine (5)
Uridine (5)
Malonyl-CoA (4)
Valine (4)
Leucine (4)
Thymine (4)
Xanthosine (4)
4-Hydroxybenzaldehyde (4)
Cholic acid (4)
Arginine (4)
Malic acid (4)
Proline (4)
N-Acetylmannosamine (4)
L-Tryptophan (4)
Uracil (4)
Succinate (4)
Guanine (4)
Creatinine (4)
L-Histidine (4)
Choline (4)
Glutathione (4)
Pyroglutamic acid (4)

First Public Date

2024 (173)
2025 (151)
2013 (141)
2026 (132)
2022 (128)
2023 (127)
2021 (116)
2020 (86)
2019 (61)
2018 (60)
2017 (52)
2014 (45)
2016 (32)
2015 (26)
2012 (4)
2011 (2)
2010 (1)

Modelling Approach

Computational model (1)
Constraint-based model (1)

Lab affiliation

GlycoProteomics Laboratory, Department of Parasitology, Institute of Biomedical Sciences, University of Sao Paulo, Avenida Lineu Prestes 1374, CEP 05508-000, Sao Paulo, Brazil (3)
University of Delhi South Campus (1)
1. Laboratory of Protein and Peptide Pharmaceuticals & Laboratory of Proteomics, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China 2. University of Chinese Academy of Sciences, Beijing 100049, China (1)
Biomolécules et Biotechnologies Végétales, EA2106, Université de Tours, 37200 Tours, France (1)
Department of Biological Sciences, Department of Chemistry & Biochemistry University of Delaware Newark DE, 19716 (1)
Department of Biomedical Science Centre for Membrane Interactions and Dynamics (CMIAD) Firth Court, Western Bank The University of Sheffield Sheffield S10 2TN United Kingdom (1)
Dr. Panjwani Center for Molecular Medicine and Drug Research, International Center for Chemical and Biological Sciences, University of Karachi, Karachi-75270, Pakistan (1)
Aix-Marseille Univ, CNRS, LISM, IMM FR3479, 13009 Marseille, France (1)
Proteomics Unit, Biotechnology Programme, CNIO (Centro Nacional de Investigaciones Oncológicas),Madrid, Spain (1)
Biological Mass Spectrometry Lab,Department of Translational Medicine (DiMeT),Center for Translational Research on Autoimmune & Allergic Diseases - CAAD,University of Piemonte Orientale, Corso Trieste 15/A, 28100, Novara, Italy (1)
Lipolysis and Bacterial Pathogenicity Team LISM UMR7255 CNRS 31 chemin Joseph Aiguier - CS 70071 F 13402 MARSEILLE cedex 09 FRANCE (1)
Molecular Genetics Laboratory, Infection and Immunology Division, Translational Health Science and Technology Institute, India (1)
Laboratoire des bactériophages et de phagothérapie, CRISP, CHUV, Lausanne, Switzerland (1)
Faculty of Pharmaceutical Sciences (1)
PFGRC (1)
Maynooth University, Ireland (1)
Professor, Department of Clinical and Molecular Medicine, Norwegian University of Science and Technology (NTNU), PO Box 8905, N-7491, Trondheim, Norway Phone: +47 72573075, Fax: +47 72576400 (1)
Lipolysis and Bacterial Pathogenicity Team, LISM UMR7255 CNRS, 32 chemin Joseph Aiguier - CS 70071, F-13402 Marseille cedex 09 (lab head) (1)
Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, System Biology Laboratory (1)
IB3, Heriot Watt University, Edinburgh EH14 4AS, UK (1)
Department of Biological Sciences, University of Notre Dame,Notre Dame, INDIANA 46556, USA (1)
Department of Biochemistry and Molecular Biology, Brody School of Medicine at East Carolina University, NC, USA (1)
Institute of Structural and Molecular Biology, Division of Biosciences, Darwin Building, University College London, Gower Street, London WC1E 6BT, United Kingdom (1)
Lab Head, Department of Biochemistry and Pharmacology, The University of Melbourne (1)
Zhejiang University School of Medicine (1)
Functional Genomics Laboratory, Translational Health Science and Technology Institute (1)
ProteoToul, Institute of Pharmacology and Structural Biology (IPBS), CNRS, Toulouse (1)
Fluminense Federal Unibersity (1)
Postgraduate Program in Health Sciences, Center of Health Sciences, State University of Maringá, Maringá-PR, Brazil (1)
Lanzhou University, Lanzhou, Gansu, China (1)

IsPrivate

False (2)

Model Flag

Non Kinetic (1)

Submitter Keywords

Ersilia (1)
FAIR-AIML (1)
Machine Learning Model (1)
FROG (1)

Classification

bacteria (572)
viruses (11)
fungi (5)

Modification

Not available (1)

Study type

Transcription profiling by array (118)
RNA-seq of coding RNA (11)
Transcription profiling by RT-PCR (7)
Comparative genomic hybridization by array (7)
DNA-seq (4)
Methylation profiling by array (4)
Unknown experiment type (3)
Genotyping by array (3)
Other (3)
ChIP-seq (3)
ChIP-chip by tiling array (2)
RNA-seq of coding RNA from single cells (2)
RNA-seq of total RNA (2)
ATAC-seq (1)
RIP-seq (1)
MicroRNA profiling by array (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (954)
2023 (851)
2025 (824)
2021 (800)
2024 (730)
2020 (622)
2019 (487)
2018 (393)
2017 (274)
2016 (271)
2015 (252)
2014 (173)
2013 (160)
2012 (111)
2026 (103)
2010 (90)
2011 (87)
2009 (53)
2008 (45)
2007 (24)
2006 (24)
2005 (16)
2004 (10)
2003 (5)
2002 (4)
2000 (4)
2001 (3)
1999 (2)
1998 (1)
1997 (1)

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Metabolite profiling of Malaysian Gracilaria edulis reveals Eplerenone as novel antibacterial compound for drug repurposing against MDR Bacteria

Not available

ORGANISM(S): Gracilaria edulis

ST001839 | MetabolomicsWorkbench

Colistin resistance in Acinetobacter baumannii MDR-ZJ06 revealed by a multiomics approach

To explore how multiple drug-resistant A. baumannii response to colistin resistance, we compared the genomic, transcriptional and proteomic profile of A. baumannii MDR-ZJ06 to that of induced colistin resistant strain ZJ06-200P5-1.

ORGANISM(S): Acinetobacter baumannii

2017-03-15 | PXD005265 | Pride

Colistin acinetobacter baumannii

Acinetobacter baumannii MDR-ZJ06

The transcriptome of Acinetobacter baumannii MDR-ZJ06 vs ZJ06-200P5-1

PRJNA371530 | ENA

Gene expression changes in response to drought stress in Arabidopsis reveal early responses leading to acclimation in plant growth

Plant drought stress response and resistance are complex biological processes that merit systems-level analyses to dissect drought stress encountered by crops in the field. We have used gene expression profiling of Arabidopsis plants subjected to a controlled, sublethal, moderate drought (mDr) treat...

ORGANISM(S): Arabidopsis thaliana

2010-10-01 | E-GEOD-24177 | biostudies-arrayexpress

Acinetobacter baumannii MDR-TJ

Acinetobacter baumannii MDR-TJ genome sequencing

PRJNA52959 | ENA

Acinetobacter baumannii strain:MDR-SHH02

Acinetobacter baumannii MDR-SHH02 Genome sequencing

PRJNA256112 | ENA

Acinetobacter baumannii strain:MDR-AB2

Acinetobacter baumannii Clinical Isolate MDR-AB2 Genome sequencing

PRJNA1091839 | ENA

Next generation RNA sequencing to identify overexpressed transporter genes in Zymoseptoria tritici field strains

Septoria leaf blotch is a worldwide threat for wheat and mainly controlled by the application of synthetic fungicides. The fungal pathogen responsible for this disease, Zymoseptoria tritici, was shown as highly adaptable to its host plant, but also to fungicide challenge. Over the past decades it de...

ORGANISM(S): Zymoseptoria tritici

2015-06-10 | E-GEOD-58672 | biostudies-arrayexpress

MDR strains

MDR strains Croatia

PRJEB75504 | ENA

Acinetobacter baumannii MDR-ZJ06

Multidrug resistant isolate

PRJNA28333 | ENA

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