Medical proteomics

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Unknown (16587)
Proteomics (10186)
Genomics (331)
Transcriptomics (163)
Metabolomics (107)
Multiomics (96)
Other (30)
Genomic (4)
Models (1)

Organisms

Homo sapiens (1549)
Mus musculus (636)
Rattus norvegicus (115)
Saccharomyces cerevisiae (10)
Danio rerio (10)
unidentified (3)
Solanum tuberosum (3)
synthetic construct (2)
Oryza sativa (2)
Gallus gallus (2)
Sus scrofa (2)
Eukaryota (1)
Hebeloma cylindrosporum (1)
Agrobacterium tumefaciens (1)
Bacillus pumilus (1)
Streptomyces natalensis ATCC 27448 (1)
Phaseolus vulgaris (1)
Methanococcus maripaludis (1)
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (1)
Shigella flexneri 2a str. 301 (1)
Geobacter sulfurreducens PCA (1)
Ixodes scapularis (1)
Macaca nemestrina (1)
Bombyx mori (1)
Bacillus subtilis subsp. subtilis str. 168 (1)
Schizosaccharomyces pombe 972h- (1)
Ectocarpus siliculosus (1)
Bartonella henselae (1)
Xenopus laevis (1)
Macaca fascicularis (1)

Organisms

Homo sapiens (151)
Mus musculus (66)
Rattus norvegicus (7)
Mesocricetus auratus (2)
Saccharomyces cerevisiae (2)
Cyanea sp. HL-2019 (1)
Escherichia coli B (1)
Mycobacteroides abscessus ATCC 19977 (1)
Heteractis magnifica (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S (1)
Camelus bactrianus (1)
Human adenovirus 7 (1)
Bifidobacterium longum subsp. infantis (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Xenopus laevis (1)
Cavia porcellus (1)
Enterobacter cloacae (1)
Mus (1)
rat gut metagenome (1)
Macaca mulatta (1)
Bos taurus (1)
Gallus gallus (1)
Staphylococcus aureus (1)
unidentified (1)

Repository

pride (5957)
iProX (1692)
MassIVE (1598)
jPOST (454)
ENA (304)
biostudies-arrayexpress (266)
PeptideAtlas (152)
PanoramaPublic (125)
MetaboLights (100)
PAXDB (100)
GPMDB (29)
EGA (21)
LINCS (9)
geo (6)
GNPS (5)
dbGaP (4)
MetabolomicsWorkbench (2)
BioModels (1)

Tissue

Cell culture (1503)
Epithelial cell (423)
Brain (369)
Liver (234)
Blood plasma (232)
Permanent cell line cell (222)
Heart (200)
Blood (173)
Fibroblast (156)
Kidney (147)
Blood serum (122)
Colon (115)
Lung (114)
Blood cell (113)
Hepatocyte (86)
Macrophage (86)
Skin (80)
Others (75)
Male Reproductive System (14)
Female Reproductive System (13)
Liver (7)
Heart (6)
Kidney (4)
Lung (4)
Pancreas (3)
Plasma Non-glyco (3)
Spleen (3)
Brain (2)
Digestive System (2)
Adrenal Gland (1)

Disease

Disease free (158)
Colon cancer (129)
Breast cancer (109)
Acute leukemia (81)
Cardiovascular system disease (70)
Alzheimer's disease (52)
Cervix carcinoma (48)
Malignant neoplasm of ovary (44)
Type 2 diabetes mellitus (36)
Prostate adenocarcinoma (33)
Not Available (29)
Brain cancer (29)
Melanoma (24)
Wounds and Injuries (24)
Glioblastoma (23)
Parkinson's disease (23)
Hepatocellular carcinoma (21)
Lung cancer (21)
Lymphoma (20)
Pancreatic ductal adenocarcinoma (20)
Neuroblastoma (18)
COVID-19 (15)
Brain glioblastoma multiforme (14)
Multiple myeloma (14)
Amyotrophic lateral sclerosis (13)
Multiple sclerosis (2)
Colon cancer metastasis (1)
Locally advanced rectal cancer (1)
IgG negative for EV71 and CA21 (1)
Cervical cancer (1)

Technology Type

Mass Spectrometry (5959)
Shotgun proteomics (2919)
Bottom-up proteomics (1168)
Data-dependent acquisition (724)
Affinity purification coupled with mass spectrometry proteomics (669)
Data-independent acquisition (419)
Gel-based experiment (386)
SWATH MS (222)
Top-down proteomics (194)
SRM/MRM (94)
Chemical cross-linking coupled with mass spectrometry proteomics (82)
Mass spectrometry (71)
All-ion fragmentation (44)
HDMSE (36)
DiaPASEF (30)
Affinity proteomics (28)
Mass spectrometry imaging (28)
MSE (23)
Proteogenomics (19)
Mass spectrometry assay (18)
NMR spectroscopy (11)
Mass spectrometry (5)
Illumina (2)
ESI (2)
Illumina HiSeq 2500 (ILLUMINA) (1)
AB SOLiD System 3.0 (1)
Illumina HiSeq 2000 (1)
Fluorescence intensity (1)
RPPA (1)
Shotgun-MS (1)

Instrument Platform

Q Exactive (279)
Orbitrap Fusion Lumos (256)
LTQ Orbitrap Velos (175)
Orbitrap Fusion (136)
Instrument (29)
Orbitrap Astral (13)
Orbitrap Ascend (12)
Illumina HiSeq 2500 (10)
Illumina NovaSeq 6000 (6)
Illumina HiSeq 2000 (6)
Illumina HiSeq 4000 (5)
Illumina Genome Analyzer IIx (2)
Illumina Genome Analyzer II (2)
NextSeq 550 (2)
NextSeq 500 (2)
BD Rhapsody Sequence Analysis Pipeline (1)
Aurora Cytek Cs 5L (1)
BD Rhapsody (1)
GenePix4000B (1)
GenePix 4100A (Molecular Device) (1)
InnoScan 900 (1)
Genetix aQuire (1)
Affymetrix Gene Atlas System (1)
NextSeq 1000 (1)
Illumina NovaSeq X (1)
NextSeq 2000 (1)
GenePix 4000B (1)
DNBSEQ-G400 (1)
Bruker TimsTof Pro (1)
TripleTOF 5600+ (1)

Publication Date

2025 (1448)
2022 (1184)
2024 (1168)
2023 (1145)
2026 (976)
2021 (826)
2020 (665)
2019 (484)
2018 (361)
2017 (292)
2014 (265)
2016 (264)
2015 (171)
2013 (63)
2012 (56)
2010 (27)
2011 (22)
2008 (12)
2009 (10)
2007 (4)
2005 (2)
2003 (2)
2006 (2)

UNIPROT ID/AC

1433G_HUMAN (28)
1433Z_HUMAN (28)
6PGD_HUMAN (28)
6PGL_HUMAN (28)
ALDOA_HUMAN (28)
ARPC4_HUMAN (28)
BLVRB_HUMAN (28)
CAH2_HUMAN (28)
CALR_HUMAN (28)
CAP1_HUMAN (28)
CATA_HUMAN (28)
CLH1_HUMAN (28)
COF1_HUMAN (28)
EF1A1_HUMAN (28)
EF1G_HUMAN (28)
EF2_HUMAN (28)
ENOA_HUMAN (28)
FABP5_HUMAN (28)
FINC_HUMAN (28)
G3P_HUMAN (28)
G6PI_HUMAN (28)
GDIB_HUMAN (28)
GELS_HUMAN (28)
HBA_HUMAN (28)
HBB_HUMAN (28)
HBD_HUMAN (28)
HBG2_HUMAN (28)
HS90A_HUMAN (28)
HS90B_HUMAN (28)
HSP7C_HUMAN (28)

ENSEMBL ID

ENSG00000170477 (119)
ENSG00000229353 (73)
ENSG00000147251 (40)
ENSG00000247315 (28)
ENSDARG00000000103 (16)
ENSDARG00000001431 (16)
ENSDARG00000001915 (16)
ENSDARG00000001950 (16)
ENSDARG00000001993 (16)
ENSDARG00000002480 (16)
ENSDARG00000005039 (16)
ENSDARG00000005560 (16)
ENSDARG00000005791 (16)
ENSDARG00000006399 (16)
ENSDARG00000007219 (16)
ENSDARG00000009285 (16)
ENSDARG00000009484 (16)
ENSDARG00000010149 (16)
ENSDARG00000010478 (16)
ENSDARG00000013078 (16)
ENSDARG00000016301 (16)
ENSDARG00000016393 (16)
ENSDARG00000017014 (16)
ENSDARG00000017624 (16)
ENSDARG00000018404 (16)
ENSDARG00000020008 (16)
ENSDARG00000021124 (16)
ENSDARG00000022767 (16)
ENSDARG00000023323 (16)
ENSDARG00000024746 (16)

CHEBI ID

CHEBI:15428 (17)
CHEBI:32816 (17)
CHEBI:30769 (17)
CHEBI:28044 (16)
CHEBI:15741 (16)
CHEBI:16335 (15)
CHEBI:28300 (15)
CHEBI:16708 (15)
CHEBI:17568 (15)
CHEBI:16811 (14)
CHEBI:25017 (14)
CHEBI:25094 (14)
CHEBI:18186 (14)
CHEBI:18012 (14)
CHEBI:16919 (14)
CHEBI:17596 (14)
CHEBI:17368 (14)
CHEBI:22660 (13)
CHEBI:6650 (13)
CHEBI:15891 (13)
CHEBI:30915 (13)
CHEBI:16027 (13)
CHEBI:16750 (13)
CHEBI:16737 (13)
CHEBI:27897 (13)
CHEBI:17822 (12)
CHEBI:27266 (12)
CHEBI:26271 (12)
CHEBI:16704 (12)
CHEBI:15354 (12)

Metabolite Name

Betaine (14)
Choline (14)
Uric acid (13)
Creatine (13)
Glycine (11)
Methionine (11)
Adenosine (11)
L-Phenylalanine (11)
Xanthine (10)
Uridine (10)
L-Leucine (10)
L-Tyrosine (10)
Hypoxanthine (10)
Serine (9)
L-Lysine (9)
Citric acid (9)
Adenine (9)
Cytidine (9)
Creatinine (9)
Leucine (8)
Valine (8)
Glutamine (8)
Alanine (8)
Glycerol (8)
Valine (8)
Isoleucine (8)
Leucine (8)
Glutathione (8)
Glycine (8)
Succinic acid (8)

First Public Date

2026 (66)
2025 (44)
2024 (43)
2021 (35)
2023 (32)
2022 (27)
2020 (13)
2018 (9)
2016 (8)
2019 (7)
2014 (6)
2017 (5)
2015 (5)
2013 (4)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (130)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (45)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (41)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (31)
Harvard Medical School (29)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (27)
University of Texas Medical Branch (21)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (15)
Medical University of Vienna (15)
iBET – Instituto de Biologia Experimental e Tecnológica, Av. da República, Oeiras, 2780-157, Portugal (14)
Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK (13)
Head Proteomics Group, Leiden University Medical Center, Center for Proteomics and Metabolomics, PO Box 9600, Postal zone P1-Q, 2300 RC Leiden, The Netherlands (13)
Cedars-Sinai Medical Center (12)
Core Facility Proteomics, Department of Clinical Chemistry, University Medical Center Goettingen, Germany (12)
Department of Cell Biology, Harvard Medical School (12)
Proteomics Center, Erasmus MC (12)
Cambridge Institute for Medical Research, University of Cambridge (11)
Department of Neurobiology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA (11)
National Key Laboratory of Medical Molecular Biology & Department of Immunology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences (11)
Ruhr-Universität Bochum, Medizinisches Proteom-Center (11)
Brigham and Women's Hospital, Harvard Medical School (10)
Charles Perkins Centre, School of Medical Sciences, University of Sydney, Sydney, Australia. (10)
Medical Protein Chemistry (10)
University of Nebraska Medical Center (10)
Director, Proteome Center Rostock, University of Rostock, Germany (9)
Erasmus MC (9)
Laboratory of Fungal Pathogenesis, Centre for DNA Fingerprinting and Diagnostics (CDFD), Hyderabad, India (9)
State Key Laboratory of Reproductive Medicine, Nanjing Medical University (9)
Tianjin Medical University (9)
VIB-UGent Center for Medical Biotechnology (9)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Classification

bacteria (5)
viruses (1)

Modification

15.994915 (18)
42.010565 (14)
4-tetrahydrothiazine-3-carboxylic acid (13)
-17.026549 (12)
4x(15)N labeled L-arginine (12)
57.021464 (11)
Not available (11)
2x(15)N labeled L-lysine (10)
79.966331 (5)
-18.010565 (4)
4 (4)
45.029395 (4)
58.005479 (3)
N6 (3)
N6-dimethyl-L-lysine (3)
+3amu) (2)
0.984016 (2)
4x(2)H labeled dimethylated residue (2)
56.026215 (2)
6-dioxaoctanediamine derivatized cysteine (2)
10.008269 (1)
14.01565 (1)
19.989829 (1)
22.008724 (1)
28.0313 (1)
3-dipalmitoyl-glycerol)cysteine (1)
3.994915 (1)
32.056407 (1)
3x(2)H labeled N6-acetyl-L-lysine (1)
47.984744 (1)

Study type

Proteomic profiling by array (92)
Transcription profiling by array (83)
RNA-seq of coding RNA (44)
Other (6)
Proteomic profiling by mass spectrometer (5)
Antigen profiling (5)
RNA-seq of coding RNA from single cells (4)
ChIP-seq (3)
RNA-seq of total RNA (3)
Unknown experiment type (2)
Animal - One-color microarray (2)
Animal - High-throughput sequencing (2)
Cell line - High-throughput sequencing (2)
Spatial transcriptomics by high-throughput sequencing (2)
RNA-seq of non coding RNA (2)
ChIP-chip by tiling array (1)
CLIP-Seq (1)
Cell line - One-color microarray (1)
Transcription profiling by tiling array (1)
MicroRNA profiling by high throughput sequencing (1)
Comparative genomic hybridization by array (1)
RIP-seq (1)
DNA-seq (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (1927)
2022 (1798)
2023 (1686)
2021 (1637)
2024 (1634)
2020 (1370)
2019 (1055)
2018 (907)
2017 (812)
2016 (784)
2015 (679)
2014 (581)
2013 (401)
2012 (301)
2026 (271)
2011 (262)
2010 (233)
2009 (185)
2008 (118)
2007 (82)
2006 (45)
2005 (27)
2004 (22)
2003 (15)
2002 (10)
2001 (4)
2000 (1)

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Integrated Proteomics and Metabolomics Analyses Revealed Potential Phospholipid-Related Biomarkers in Rabbit Atherosclerotic Plaques

BACKGROUND AND AIMS: Atherosclerosis, characterized by dysfunction of lipid metabolism and chronic inflammation, is considered as a metabolic disorder as well as a major contributor to cardiovascular diseases. However, metabolic signatures of atherosclerosis have not been well ex...

2024-09-26 | MTBLS9737 | MetaboLights

Proteomics and metabolomics of multiple sclerosis

Not available

ORGANISM(S): Mus musculus

ST002415 | MetabolomicsWorkbench

Integrated Proteomics and Metabolomics Analysis Reveals Differential Lipid Metabolism in HUVEC under high and low shear stress

OBJECTIVE: Atherosclerotic plaque development is closely associated with the hemodynamic forces applied to endothelial cells (EC). Among these, shear stress (SS) plays a key role in disease development since changes in flow intensity and direction could stimulate an atheroprone or athero...

2019-07-25 | MTBLS739 | MetaboLights

Serum proteomics and metabolomics reveal novel noninvasive molecular signatures for hepatocellular carcinoma diagnosis

This study aimed to identify and validate noninvasive serum protein and metabolite biomarkers for the early detection and prognostic assessment of hepatocellular carcinoma (HCC).In this study, we systematically analyzed serum proteomics and metabolomics across four cohorts, including healthy control...

2026-04-10 | MTBLS14248 | MetaboLights

Proteomics and tracer metabolomics link GAPDH ISGylation to glycolytic control

Ubiquitin-like protein ISG15 (interferon-stimulated gene 15) has been implicated in the regulation of central carbon metabolism, but conflicting findings across experimental systems have limited mechanistic insight. Here, we applied a multi-omics approach in cells ectopically expressing the ISGyl...

2026-03-02 | MTBLS12619 | MetaboLights

Mechanism of Hepatotoxicity Induced by Ethanol Extract of Emilia sonchifolia (L.) DC Revealed by Proteomics and Metabolomics

Objective: Hepatotoxicity has been reported for Emilia sonchifolia (L.) DC (Emilia sonchifolia). The plant material is typically prepared using two extraction methods for practical application: water extraction and ethanol extraction. However, our previous research only investigated its wate...

2025-10-30 | MTBLS13237 | MetaboLights

Proteomics and metabolomics of multiple sclerosis (Part 2)

Not available

ORGANISM(S): Mus musculus

ST002416 | MetabolomicsWorkbench

Biological Characteristics of SARS-CoV-2 Resistant Populations: A Cohort Comparison Study through Integrated Gut Microbiota Sequencing, Metabolomics and Proteomics

Objective: Most research reports on COVID-19 infections have focused on the correlation between the severity of the disease symptoms and immune deficits, while the mechanisms affecting the susceptibility to SARS-CoV-2 remain largely unknown. The study aimed to comprehensively analyze the differen...

2025-06-28 | MTBLS12654 | MetaboLights

Analysing Medical Device Related Pressure Injuries through Sequential Window Acquisition of all Theoretical Fragment Ion Spectra Mass Spectrometry

This project aimed to investigate the proteome of wound fluid collected from medical device related pressure injuries.

ORGANISM(S): Homo sapiens (Human)

2026-09-07 | PXD069939 | Pride

Visualize: a free and open source multifunction tool for proteomics data analysis.

Not available

S-EPMC3816356 | biostudies-literature

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