Meehan R R RR - OmicsDI

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Unknown (26)
Metabolomics (10)
Transcriptomics (7)
Genomics (1)
Proteomics (1)

Organisms

Homo sapiens (7)
Mus musculus (2)

Repository

MetaboLights (9)
biostudies-arrayexpress (8)
GNPS (1)
pride (1)

Tissue

Cell culture (1)
Epithelial cell (1)

Disease

Breast cancer (1)

Technology Type

Mass spectrometry (8)
Mass spectrometry assay (1)
Mass Spectrometry (1)
Shotgun proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (7)
Liquid Chromatography MS - negative - reverse phase (2)
Illumina iScan microarray scanner (1)
Agilent Surescan High Resolution DNA microarray Scanner (1)
Illumina iScan (1)
Agilent Surescan High Resolution DNA Microarray Scanner (1)
LTQ FT (1)
MaXis (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive (1)

Publication Date

2023 (7)
2016 (4)
2013 (2)
2014 (1)
2011 (1)
2015 (1)
2025 (1)
2024 (1)
2021 (1)

CHEBI ID

CHEBI:16359 (3)
CHEBI:28865 (3)
CHEBI:30769 (3)
CHEBI:35038 (3)
CHEBI:139138 (2)
CHEBI:143745 (2)
CHEBI:143757 (2)
CHEBI:173703 (2)
CHEBI:182784 (2)
CHEBI:195271 (2)
CHEBI:27432 (2)
CHEBI:27997 (2)
CHEBI:34494 (2)
CHEBI:34687 (2)
CHEBI:64563 (2)
CHEBI:73858 (2)
CHEBI:75342 (2)
CHEBI:80774 (2)
CHEBI:10136 (1)
CHEBI:116314 (1)
CHEBI:131342 (1)
CHEBI:1427 (1)
CHEBI:145227 (1)
CHEBI:15422 (1)
CHEBI:15603 (1)
CHEBI:156271 (1)
CHEBI:15741 (1)
CHEBI:15781 (1)
CHEBI:15846 (1)
CHEBI:15978 (1)

Metabolite Name

Cholic acid (3)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
9(10)-EpOME (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
Dibutyl phthalate (DBP) (2)
Elaidic acid (2)
Lyso-PC(16:0) (2)
Monoolein (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
Succinate (2)
Taurocholic acid (2)
(R)-4-((3R,4R,5S,8S,9S,10R,13R,14S,17R)-3,4-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(R)-4-((3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
1,3,5-triprop-2-enyl-1,3,5-triazaperhydroine-2,4,6-trione (1)
1,4a-dimethyl-9-oxo-7-propan-2-yl-3,4,10,10a-tetrahydro-2H-phenanthrene-1-carboxylic acid (1)
1-(9Z-Octadecenoyl)-sn-glycero-3-phosphocholine (1)
1-Heptadecanoyl-sn-glycero-3-phosphocholine (1)
1-Hexadecanoyl-sn-glycerol (1)
1-Hexadecyl-sn-glycero-3-phosphocholine (1)
1-Myristoyl-2-stearoyl-sn-glycero-3-phosphocholine (1)
1-Myristoyl-sn-glycero-3-phosphocholine (1)
1-Palmitoyl-2-myristoyl-sn-glycero-3-phosphocholine (1)
13(S)-HODE methyl ester (1)
13-Keto-9Z,11E-octadecadienoic acid (1)
16-Hydroxyhexadecanoic acid (1)
17(18)-EpETE (1)

Study type

Transcription profiling by array (4)
Methylation profiling by array (3)
Methylation profiling by high throughput sequencing (1)

Release Date

2016 (6)
2013 (5)
2021 (5)
2025 (4)
2017 (4)
2022 (2)
2020 (2)
2015 (2)
2014 (1)
2011 (1)
2019 (1)
2012 (1)

Lab affiliation

Translational Oncology Research Group, Institute of Genetics and Cancer, Western General Hospital, University of Edinburgh, Scotland, United Kingdom (1)

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Defining baseline epigenetic landscapes in the rat liver.

Not available

S-EPMC5957268 | biostudies-literature

A novel approach for the discovery of biomarkers of radiotherapy response in breast cancer

Radiotherapy is a commonly used treatment modality for the local control of breast cancer. However, the clinical signs of radiotherapy response are often not apparent for several weeks post-treatment. We currently lack tools to predict and/or monitor tumor responses during treatment. The aim of this...

ORGANISM(S): Homo sapiens (Human)

2021-08-13 | PXD027572 | Pride

Host-gut microbiota interactions shape parasite infections in farmed Atlantic salmon

Animals and their associated microbiota share long evolutionary histories. However, it is not always clear how host genotype and microbiota interact to affect phenotype. We applied a hologenomic approach to explore how host-microbiota interactions shape lifetime growth and parasite infection in f...

2024-01-24 | MTBLS8575 | MetaboLights

Gene expression in E18.5 Tex19.1-/- mouse placenta

Microarray experiment to identify changes in gene expression in 18.5 day post coitum Tex19.1-/- mouse placenta. Tex19.1 is expressed in trophectoderm-derived cells in the placenta. Tex19.1-/- placentas are small and have defects in junctional zone and labyrinth layers of the placenta, Tex19.1-/- emb...

ORGANISM(S): Mus musculus

2013-03-08 | E-GEOD-41823 | biostudies-arrayexpress

Unveiling molecular changes in guabiju during Aspergillus brasiliensis cultivation: insights from untargeted metabolomics

Black aspergilli exhibit remarkable bioconversion potential by transforming plant matrices into bioactive compounds, although their metabolic processes remain underexplored. This study investigated the biotransformation of metabolites during the solid-state cultivation of guabiju (Myrcianthes...

2025-08-08 | MTBLS12436 | MetaboLights

Comparative analysis of affinity-based 5-hydroxymethylation enrichment techniques.

Not available

S-EPMC3905904 | biostudies-literature

The genome-defence gene Tex19.1 suppresses LINE-1 retrotransposons in the placenta and prevents intra-uterine growth retardation in mice.

Not available

S-EPMC3613164 | biostudies-literature

Non-alcoholic fatty liver disease (NAFLD) is associated with dynamic changes in DNA hydroxymethylation.

Not available

S-EPMC6961686 | biostudies-literature

Dynamic changes in 5-hydroxymethylation signatures underpin early and late events in drug exposed liver.

Not available