Mega William W - OmicsDI

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Transcriptomics (18)
Unknown (4)
Genomics (2)
Metabolomics (1)

Organisms

Homo sapiens (10)
Mus musculus (3)
Arabidopsis thaliana (2)
Emiliania huxleyi (1)
Caenorhabditis elegans (1)
Escherichia coli K-12 (1)
Saccharomyces cerevisiae (1)
Rattus norvegicus (1)
Drosophila melanogaster (1)

Repository

biostudies-arrayexpress (20)
EGA (1)
MetaboLights (1)

Disease

Squamous cell carcinoma (1)
Small cell lung carcinoma (1)

Technology Type

Mass spectrometry assay (1)

Instrument Platform

Axon GenePix 4000B scanning hardware (2)
Liquid Chromatography MS - alternating - reverse phase (1)

Publication Date

2015 (4)
2013 (3)
2011 (3)
2010 (3)
2022 (1)
2012 (1)
2009 (1)
2008 (1)
2007 (1)
2005 (1)
2004 (1)
2025 (1)

CHEBI ID

CHEBI:10017 (1)
CHEBI:10072 (1)
CHEBI:113 (1)
CHEBI:1148 (1)
CHEBI:115 (1)
CHEBI:116931 (1)
CHEBI:122 (1)
CHEBI:12532 (1)
CHEBI:125610 (1)
CHEBI:132810 (1)
CHEBI:132983 (1)
CHEBI:133057 (1)
CHEBI:133530 (1)
CHEBI:134458 (1)
CHEBI:135150 (1)
CHEBI:136292 (1)
CHEBI:136805 (1)
CHEBI:137245 (1)
CHEBI:138520 (1)
CHEBI:138529 (1)
CHEBI:1387 (1)
CHEBI:139388 (1)
CHEBI:140761 (1)
CHEBI:141565 (1)
CHEBI:142592 (1)
CHEBI:142593 (1)
CHEBI:1427 (1)
CHEBI:143045 (1)
CHEBI:143244 (1)
CHEBI:145961 (1)

Metabolite Name

(+)-dethiobiotin (1)
(+)-hydrobenzoin (1)
(+/-)-6-Hydroxy-3-oxo-alpha-ionol (1)
(+/-)-Eucalyptol (1)
(+/-)-Metanephrine (1)
(-)-Sativan (1)
(-)-Shikimic acid (1)
(-)-Usnicacid (1)
(2E)-2-[(Methylsulfanyl)methyl]-2-butenal (1)
(2S)-2-[(4-Aminobenzoyl)amino]pentanedioate (1)
(2S)-2-{[1-(R)-Carboxyethyl]amino}pentanoate (1)
(5E)-7-methylidene-10-oxo-4-(propan-2-yl)undec-5-enoic acid (1)
(E)-2-nonenal (1)
(E)-3,4,5-Trimethoxycinnamic acid (1)
(R)-2-Methylimino-1-phenylpropan-1-ol (1)
(R)-Norcoclaurine (1)
(R)-Salsolinol (1)
(S)-3'-Hydroxy-N-methylcoclaurine (1)
(S)-beta-Methylindolepyruvate (1)
-L-Fucopyranose (1)
1,3-dipyridin-3-ylpropane-1,3-dione (1)
1-(1,8-dihydroxy-3,6-dimethyl-2-naphthyl)ethan-1-one (1)
1-(2,4-dihydroxyphenyl)-2-(3,5-dimethoxyphenyl)propan-1-one (1)
1-(2-Carboxyethyl)-2,3,4,9-tetrahydro-1H-beta-carboline-3-carboxylic acid (1)
1-(3,4-dimethoxyphenyl)ethan-1-one oxime (1)
1-(beta-D-Ribofuranosyl)-1,4-dihydronicotinamide (1)
1-Hexanoic acid (1)
1-Methyl Adenosine (1)
1-Methyladenine (1)
1-Methylinosine (1)

Study type

Transcription profiling by array (9)
Comparative genomic hybridization by array (4)
RNA-seq of coding RNA (2)
ChIP-chip by tiling array (1)
Other (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2015 (4)
2011 (4)
2013 (3)
2010 (3)
2012 (2)
2022 (1)
2009 (1)
2008 (1)
2007 (1)
2005 (1)
2004 (1)
2024 (1)
2023 (1)

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A draft reference genome assembly of the Pipevine Swallowtail butterfly, Battus philenor hirsuta.

Not available

S-EPMC10650949 | biostudies-literature

Protozoal populations drive system-wide variation in the rumen microbiome

While rapid progress has been made to characterize the bacterial and archaeal populations of the rumen microbiome, insight into how they interact with keystone protozoal species remains elusive. Here, we reveal two distinct rumen community types (RCT-A and RCT-B) that are not strongly associated ...

2025-06-11 | MTBLS12283 | MetaboLights

The nuclear localization signal of monkeypox virus protein P2 orthologue is critical for inhibition of IRF3-mediated innate immunity.

Not available

S-EPMC11229740 | biostudies-literature

Transcription profiling of Drosophila homozygous CP190[1] 0 hour white prepupae (non tubby, red malpighian tubules) homozygous CP190[2] 0 hour white prepupae (non tubby, red malpighian tubules) homozygous red[1] e[1] 0 h white prepupae (source from which the mutated chromosome was obtained)

CP190 is a Drosophila protein of unknown function that exhibits cell cycle-specific localisation to the centrosome during mitosis and the nucleus during the interphase. CP190 associates with multiple sites on polytene chromosomes and its predicted amino acid sequence identifies four C2h2 zinc finger...

ORGANISM(S): Drosophila melanogaster

2004-04-21 | E-FLYC-1 | biostudies-arrayexpress

Comparative genomic hybridization of twelve strains of coccolithovirus to determine genomic content

The coccolithoviruses contained within the Plymouth Virus Collection (PVC) were screened for genomic content using a microarray. The diversity in genomic content was assessed for twelve strains: EhV-86, on which the microarray is based; EhV-84, EhV-88, EhV-163, EhV-V2, EhV-201, EhV-202, EhV-205, EhV...

ORGANISM(S): Emiliania huxleyi

2013-01-30 | E-MAXD-11 | biostudies-arrayexpress

Agilent 244A aCGH array for comparison of lung tumor CNA to high-throughput sequencing data

1 lung tumor was profiled for copy-number alterations with the high-resolution Agilent 244A aCGH Array. One lung tumor sample were assayed on the Agilent Human Genome CGH 244A Microarrays with the intent of comparing the genomic alterations reported by the array platform with those reported by high-...

ORGANISM(S): Homo sapiens

2010-05-27 | E-GEOD-20574 | biostudies-arrayexpress

Transcription profiling of mouse TGF-a induction in saccular phase and alveolar phase lung morphogenesis in mice

Effect of TGFa induction on saccular phase or alveolar phase lung morphogenesis in mice.

ORGANISM(S): Mus musculus

2022-11-21 | E-MEXP-698 | biostudies-arrayexpress

Genome-wide profiling of DNA methylation in two Arabidopsis ecotypes and their reciprocal hybrids - small RNA-seq

Heterosis is a fundamental biological phenomenon characterized by the superior performance of a hybrid over its parents in many traits, but the underlying molecular basis remains elusive. To investigate whether DNA methylation plays a role in heterosis, we compared at single base-pair resolution th...

ORGANISM(S): Arabidopsis thaliana

2011-12-22 | E-GEOD-34656 | biostudies-arrayexpress

Genome-wide profiling of DNA methylation in two Arabidopsis ecotypes and their reciprocal hybrids - mRNA-seq

ORGANISM(S): Arabidopsis thaliana

2011-12-22 | E-GEOD-34655 | biostudies-arrayexpress

Germline duplication of ATG2B and GSKIP predisposes to familial essential thrombocythemia rapidly progressing to acute leukemia

No major predisposing gene for familial myeloproliferative neoplasms (MPN) has been identified. Here, we demonstrate that the autosomal dominant transmission of a 700 kb duplication in four geographically-related families predisposes to MPN rapidly progressing to acute leukemia. Using induced plurip...