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TranscriptomicsArgonaute proteins affect siRNA levels and accumulation of a novel extrachromosomal DNA from the Dictyostelium retrotransposon DIRS-1
We report on the function of the D. dictyostelium argonaute proteins AgnA and AgnB in the silencing mechanism of the retrotransposon DIRS-1. By deep sequencing analysis we found that AgnA is involved in the accumulation of DIRS-1 siRNAs since in respective knockout strains siRNAs are strongly reduce...
ORGANISM(S): Dictyostelium discoideum 
2014-12-04 | E-GEOD-56111 | biostudies-arrayexpress
TranscriptomicsRNAseq of Sinorhizobium meliloti 1021 treated with the chemically synthesized peptide DgDef1 delta SP delta CTPP (representing a truncated variant of the Defensin-like peptide DgDef1 from the actinorhizal plant Datisca glomerata) against an untreated control
Plant-derived nodule-specific Cys-rich peptides (NCRs) play essential roles towards microsymbionts control. To pinpoint whether DgDef1 — a nodule-specific defensin from the actinorhizal plant Datisca glomerata — fulfills similar functions, the peptide was characterized. DgDef1 affects growth of seve...
ORGANISM(S): Sinorhizobium meliloti 1021 
2022-11-16 | E-MTAB-11181 | biostudies-arrayexpress
TranscriptomicsRNA-seq of Paracoccus denitrificans Pd1222 and a ramB deletion mutant during growth on succinate and acetate
The alphaproteobacterium Paracoccus denitrificans Pd1222 has two different, yet functionally redundant acetyl-CoA assimilation routes: the Ethylmalonyl-CoA pathway (EMCP) and the glyoxylate cycle (GC). The EMPC and the GC each tightly control the balance between catabolism and anabolism by shifting ...
ORGANISM(S): Paracoccus denitrificans PD1222 
2023-06-06 | E-MTAB-12482 | biostudies-arrayexpress
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