Meta-omics - OmicsDI

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Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (26)
Andropogon gerardi (26)
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Canis lupus familiaris (26)
Cnidaria (26)
Ectopseudomonas oleovorans CECT 5344 (26)
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Human immunodeficiency virus 1 (26)
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UNIPROT ID/AC

Q01813 (2)
P14618 (2)
P17858 (2)
P21439 (2)
P05062 (2)
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P04075 (2)
P07738 (2)
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P08237 (2)
O14556 (2)
P00558 (2)
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P18669 (2)
P60174 (2)

CHEBI ID

CHEBI:1146900 (2)
CHEBI:17522 (2)
CHEBI:84650 (2)
CHEBI:77547 (2)
CHEBI:84061 (2)
CHEBI:74069 (2)
CHEBI:21260 (2)
CHEBI:17208 (2)
CHEBI:45744 (2)
CHEBI:28918 (2)
CHEBI:11060 (2)
CHEBI:27859 (2)
CHEBI:30309 (2)
CHEBI:12770 (2)
CHEBI:20616 (2)
CHEBI:2102 (2)
CHEBI:12769 (2)
CHEBI:12767 (2)
CHEBI:30310 (2)
CHEBI:20614 (2)
CHEBI:30311 (2)
CHEBI:27823 (2)
CHEBI:17120 (2)
CHEBI:144308 (2)
CHEBI:27585 (2)
CHEBI:566274 (2)
CHEBI:41865 (2)
CHEBI:9300 (2)
CHEBI:545959 (2)
CHEBI:34157 (2)

Metabolite Name

Thymine (3)
Adenosine (3)
Cis-4,7,10,13,16,19-Docosahexaenoic acid (2)
Malabaricone C (2)
Sucralose (2)
Oroselone (2)
Ustiloxin D (2)
Cryptotanshinone (2)
Olopatadine (2)
3-(3,4,5-Trimethoxyphenyl)propanoic acid (2)
Beta-Cortol (2)
Melezitose (2)
3-hydroxypristanic acid (2)
Thonzylamine (2)
(1xi,3xi)-1,2,3,4-Tetrahydro-1-methyl-beta-carboline-3-carboxylic acid (2)
Ramiprilat (2)
Ribitol (2)
Indole-3-carbinol (2)
CPA(18:0/0:0) (2)
Betonicine (2)
3-Methylguanine (2)
Beta-Zearalenol (2)
Naringenin chalcone (2)
Tridecanoic acid (2)
2-Hydroxyadipic acid (2)
Allopurinol (2)
Indoleacetic acid (2)
(2S,2'S)-Pyrosaccharopine (2)
Glycine (2)
Cytosine (2)

First Public Date

2026 (18)
2022 (16)
2025 (15)
2023 (11)
2021 (10)
2020 (6)
2024 (5)
2019 (5)
2014 (4)
2018 (2)
2017 (2)
2015 (1)

Modelling Approach

Constraint-based model (2)

Study status

Recruiting (1)

Lab affiliation

Institute of microbiology, University of Greifswald (5)
Australian Centre for Water and Environmental Biotechnology, The University of Queensland (1)
Eco-Systems Biology group, Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Luxembourg (1)
Faculty of Biosciences, NMBU-Norwegian University of Life Sciences, Post Office Box 5003 1432, Ås Norway (1)
Faculty of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences Post Office Box 5003 1432, Ås Norway (1)
Helmholtz Centre for Environmental Research GmbH - UFDZDepartment of Molecular Systems Biology Permoserstraße 15 04318 Leipzig, Germany (1)
Helmholtz-Zentrum für Umweltforschung, Department of Molecular Systems Biology (1)
I2Sysbio, Universitat de València, Spain (1)
Laboratory of Angiogenesis and Vascular Metabolism, VIB Center for Cancer Biology (CCB), VIB, Leuven, Belgium. Laboratory of Angiogenesis and Vascular Metabolism, Department of Oncology and Leuven Cancer Institute (LKI), KU Leuven, Leuven, Belgium. (1)
Laboratório Nacional de Biociências, LNBio, CNPEM, Campinas, São Paulo, Brazil (1)
Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Luxembourg (1)
Microbial Proteomics, Institute for Microbiology, Greifswald, Germany (1)
North Carolina State University (1)
Norwegian University of Life Sciences (1)
Nowergian Univeristy of Life Sciences (1)
Porto Conte Ricerche, Alghero, Sardinia, Italy (1)
Proteomics and Metabolomics Facility, University of Nebraska - Lincoln (1)
Pulmonary, Critical Care, and Sleep Medicine Veterans Affairs Medical Center, Minneapolis, MN Pulmonary, Critical Care, and Sleep Medicine University of Minnesota, Minneapolis, MN (1)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (1)
University of Greifswald, Institute of Microbiology, Department of Microbial Physiology and Molecular Biology (1)
University of Washington, Department of Genome Sciences (1)
Xiamen University (1)

IsPrivate

False (2)

Study type

Transcription profiling by array (3)
RNA-seq of coding RNA from single cells (2)
Human - High-throughput sequencing (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)
Observational (1)

Release Date

2025 (83)
2024 (68)
2022 (68)
2023 (49)
2021 (46)
2019 (31)
2020 (28)
2017 (15)
2026 (14)
2018 (13)
2014 (12)
2016 (11)
2015 (8)
2013 (3)
2008 (2)
2012 (1)
2010 (1)
2009 (1)

Location

Germany (1)

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Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance

The development of reliable, mixed-culture biotechnological processes hinges on understanding how microbial ecosystems respond to disturbances. Here we reveal extensive phenotypic plasticity and niche complementarity in oleaginous microbial populations from a biological wastewater treatment plant. W...

2021-04-06 | MTBLS2021 | MetaboLights

Anaerobic digestion meta-omics

PRJNA886046 | ENA

null

Meta-omics from sediment samples in Kermadec Trench

PRJEB121358 | ENA

gNOMO: an pipeline to integrate meta-omics data analisys of non-model organisms

This set of metaproteomics data of the Gemran cockroach hindgut community and the host has been used to validate the gNOMO pipeline. This pipeline is designed to integrate multiple meta-omics data of non-model organisms.

ORGANISM(S): Blattella germanica

2021-09-09 | PXD018642 | Pride