Proteomics

Dataset Information

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GNOMO: an pipeline to integrate meta-omics data analisys of non-model organisms


ABSTRACT: This set of metaproteomics data of the Gemran cockroach hindgut community and the host has been used to validate the gNOMO pipeline. This pipeline is designed to integrate multiple meta-omics data of non-model organisms.

INSTRUMENT(S): TripleTOF 5600

ORGANISM(S): Blattella Germanica

TISSUE(S): Hindgut

SUBMITTER: Maria Muñoz-Benavent  

LAB HEAD: Amparo Latorre

PROVIDER: PXD018642 | Pride | 2021-09-09

REPOSITORIES: Pride

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Publications

gNOMO: a multi-omics pipeline for integrated host and microbiome analysis of non-model organisms.

Muñoz-Benavent Maria M   Hartkopf Felix F   Van Den Bossche Tim T   Piro Vitor C VC   García-Ferris Carlos C   Latorre Amparo A   Renard Bernhard Y BY   Muth Thilo T  

NAR genomics and bioinformatics 20200805 3


The study of bacterial symbioses has grown exponentially in the recent past. However, existing bioinformatic workflows of microbiome data analysis do commonly not integrate multiple meta-omics levels and are mainly geared toward human microbiomes. Microbiota are better understood when analyzed in their biological context; that is together with their host or environment. Nevertheless, this is a limitation when studying non-model organisms mainly due to the lack of well-annotated sequence referenc  ...[more]

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