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ProteomicsTrichodesmium single colony metaproteomes field station Tricolim_19
Metaproteomes of individual Trichodesmium colonies collected from a single location in the Carribbean sea (65.22W, 17.02N) at 17:00 local time. Some colonies were associated with auto-fluorescent mineral particles. Their proteomes were analyzed individually to investigate the effect of the minerals ...
ORGANISM(S): Trichodesmium 
2021-07-05 | PXD016330 | Pride
Microbe Metaproteomes Trichodesmium Cyanobacterium Ocean Single colony 
UnknownTrichodesmium metaproteomes reflect the differential influence of resource availability across ocean regions.
Not available
S-EPMC12206446 | biostudies-literature
ProteomicsMetaproteomics reveals persistent and phylum-redundant metabolic functional stability in adult human gut microbiomes despite temporal variations in microbial taxa, genomes, and proteomes
Longitudinal metaproteomics data set looking at the gut microbiome metaproteomes of fivepost-surgery Crohn's Disease patients for five time points over the course of a year.
ORGANISM(S): Human Microbiome 
2018-08-16 | MSV000082823 | MassIVE
ProteomicsSystematic evaluation of PASEF acquisition strategies in complex metaproteomes
Trapped ion mobility spectrometry coupled with parallel accumulation–serial fragmentation (PASEF) has enabled multiple acquisition strategies for proteomics, yet their comparative performance in complex metaproteomes remains unclear. Here we benchmark five modes—DDA-, DIA-, Slice-, Synchro- and midi...
ORGANISM(S): Salinibacter ruber DSM 13855 Homo sapiens (Human) Ligilactobacillus murinus DSM 20452 = NBRC 14221 
2026-07-03 | PXD073779 | Pride
ProteomicsLake Zurich Bacterial Integrated Time Series (LZ-BITS)
This study investigates temporal dynamics in microbial community function within the freshwater ecosystem of Lake Zurich, Switzerland, over three months (36 timepoints). Metagenome-assembled genomes (MAGs) and metaproteomes were analyzed to identify species-specific and community-level protein expre...
ORGANISM(S): lake water metagenome 
2026-06-02 | PXD070123 | Pride
Proteome dynamics Dia-nn Bacterial communities Freshwater lake Metagenomics Dia Time-series Metaproteomics Lc-ms/ms 
ProteomicsSystematic evaluation of PASEF acquisition strategies in complex metaproteomes
Trapped ion mobility spectrometry coupled with parallel accumulation–serial fragmentation (PASEF) has enabled multiple acquisition strategies for proteomics, yet their comparative performance in complex metaproteomes remains unclear. Here we benchmark five modes—DDA-, DIA-, Slice-, Synchro- and midi...
ORGANISM(S): Mus musculus (Mouse) 
2026-07-03 | PXD073688 | Pride
Pasef Metaproteomics 
UnknownAlgae-dominated metaproteomes uncover cellular adaptations to life on the Greenland Ice Sheet.
Not available
S-EPMC12420790 | biostudies-literature
ProteomicsModern Metaproteomics: A Unique Tool to Characterize the Active Microbiome in Health and Diseases, and Pave the Road towards New Biomarkers. Example of Crohn's Disease and Ulcerative Colitis Flare-ups
Thanks to the latest developments in mass spectrometry, software and standards, metaproteomics is emerging as the vital complement of metagenomics, to make headway in understanding the actual functioning of living and active microbial communities. Modern metaproteomics offers new possibilities in th...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2022-03-22 | MSV000089099 | MassIVE
UnknownMetaproteomic analysis of Chesapeake Bay microbial communities.
Not available
S-EPMC1224879 | biostudies-literature
ProteomicsSystematic Metaproteomic Mapping of Ex vivo Gut Microbiota Functional Responses to Therapeutic Drugs (2)
Some therapeutic compounds can influence our gut microbiota, but a comprehensive understanding of their impact on microbial systems ecology remains largely unexplored. This study examines the impact of 312 therapeutic compounds on metaproteomes of six ex vivo human gut microbiota, generating 4.6 mil...
ORGANISM(S): human gut metagenome 
2025-08-28 | PXD056930 | Pride
Systems ecology Gut microbiome Metaproteomics Functional response 
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