Methanogens - OmicsDI

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Unknown (1183)
Genomics (544)
Transcriptomics (40)
Proteomics (33)
Models (5)
Metabolomics (3)
Other (2)

Organisms

Schizophyllum commune H4-8 (22)
Mycobacterium tuberculosis SP7 (22)
Oryza sativa Japonica Group (22)
Crotalus durissus terrificus (22)
Eriocheir sinensis (22)
Candidatus Endoriftia persephonae (22)
Methanococcus maripaludis S2 (21)
cellular organisms (4)
Methanobrevibacter smithii ATCC 35061 (3)
Methanosarcina acetivorans C2A (3)
Methanothermobacter thermautotrophicus (2)
Methanosarcina barkeri str. Fusaro (2)
Methanobrevibacter smithii (2)
dechlorinating enrichment culture KB-1 (2)
Methanosarcina barkeri (2)
Methanococcus maripaludis (2)
Methanosarcina barkeri MS (2)
Methanothermobacter marburgensis str. Marburg (1)
Methanothermobacter thermautotrophicus str. Delta H (1)
Methanopyrus kandleri AV19 (1)
Methanobacteria (1)
uncultured archaeon (1)
Methanosarcina acetivorans (1)
bovine gut metagenome (1)
uncultured bacterium (1)
Archaea (1)
Bacteria (1)
Methanothermobacter marburgensis (1)
Macaca mulatta (1)
anaerobic bacterium foal30 (1)

Organisms

soil metagenome (18)
Methanococcus maripaludis S2 (10)
anaerobic digester metagenome (9)
sediment metagenome (8)
biogas fermenter metagenome (5)
sludge metagenome (5)
bioreactor metagenome (5)
rice paddy metagenome (4)
gut metagenome (4)
coal metagenome (3)
groundwater metagenome (3)
hot springs metagenome (3)
Methanosarcina barkeri str. Fusaro (2)
Methanococcus maripaludis (2)
Methanosarcina acetivorans (2)
bovine gut metagenome (2)
biofilm metagenome (2)
wetland metagenome (2)
Methanobrevibacter smithii (2)
marine sediment metagenome (2)
rhizosphere metagenome (2)
Candidatus Methanoplasma termitum (1)
Methanosphaera sp. ISO3-F5 (1)
Methanothrix harundinacea 6Ac (1)
Methanosphaera sp. WGK6 (1)
Methanoculleus submarinus (1)
Methanorbis rubei (1)
Methanorbis furvi (1)
Methanocorpusculaceae archaeon Sp1 (1)
Methanolapillus africanus (1)

Repository

ENA (539)
biostudies-arrayexpress (22)
pride (22)
geo (21)
BioModels (5)
jPOST (5)
iProX (4)
NODE (4)
MassIVE (3)
MetaboLights (2)
GNPS (1)

Tissue

Prokaryotic cell (4)
Cell culture (4)

Technology Type

Mass Spectrometry (22)
Bottom-up proteomics (10)
Shotgun proteomics (8)
Gel-based experiment (5)
Data-dependent acquisition (3)
Mass spectrometry assay (1)
Mass spectrometry (1)
Data-independent acquisition (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

LTQ XL (2)
G2505A DNA microarray scanner [Agilent] (1)
Orbitrap Eclipse (1)
Q Exactive (1)
Liquid Chromatography MS - negative - HILIC (1)
Liquid Chromatography MS - positive - HILIC (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2013 (21)
2024 (13)
2026 (7)
2022 (7)
2015 (6)
2011 (5)
2023 (5)
2025 (4)
2010 (3)
2018 (3)
2016 (3)
2019 (2)
2021 (2)
2009 (1)
2008 (1)
2005 (1)
2014 (1)

CHEBI ID

CHEBI:62890 (3)
CHEBI:139151 (3)
CHEBI:85106 (3)
CHEBI:40356 (3)
CHEBI:67138 (3)
CHEBI:64076 (3)
CHEBI:64074 (3)
CHEBI:64077 (3)
CHEBI:64075 (3)
CHEBI:70731 (3)
CHEBI:13388 (3)
CHEBI:35098 (3)
CHEBI:34773 (3)
CHEBI:34606 (3)
CHEBI:74004 (3)
CHEBI:74007 (3)
CHEBI:134176 (3)
CHEBI:74853 (3)
CHEBI:71517 (3)
CHEBI:58838 (3)
CHEBI:58837 (3)
CHEBI:57677 (3)
CHEBI:60464 (3)
CHEBI:65078 (3)
CHEBI:48595 (3)
CHEBI:73682 (3)
CHEBI:27973 (3)
CHEBI:131350 (3)
CHEBI:45506 (3)
CHEBI:58556 (3)

Metabolite Name

Prostaglandin G2 (1)
B-Kessyl ketone (1)
Alpha-Glyceryl linoleate (1)
[(2S)-2-hexadecanoyloxy-3-tetradecanoyloxypropyl] (9Z,12Z)-octadeca-9,12-dienoate (1)
[(2S)-2-hexadecanoyloxy-3-hydroxypropyl] 20-methylhenicosanoate (1)
[(2R)-1-hexadecanoyloxy-3-phosphonooxypropan-2-yl] (Z)-tetracos-15-enoate (1)
Val-Val-Thr (1)
Val-Val-His-Ala-Glu (1)
Val-Asn-Tyr-Val-Asn (1)
Unii-72U0C7paav (1)
Tyr-Val-Lys-Ala-Leu (1)
Tyr-Lys-Val (1)
Tyr-Arg-Val-Asp (1)
Tyr-Arg-Gly (1)
Tyr-Ala-Thr-Asp (1)
Tryptoline (1)
Thr-Val-Trp (1)
Thr-Phe-Tyr (1)
Stigmasta-5,7,22-trien-3-ol, (3beta)- (1)
Sorbitan, monohexadecanoate (1)
Ser-Ser-Val-Gln-Glu (1)
Ser-Lys-His (1)
Ser-His-Trp (1)
Ser-Glu-Lys-Ile-Asp (1)
Ser-Asp-Glu (1)
Ser-Arg-Ala-Lys (1)
Psn 375963 hydrochloride (1)
Pro-Pro-Ala-Ala-Ile (1)
Pro-Leu-His (1)
Pro-Gln-Val (1)

IsPrivate

False (5)

Model Flag

Non Kinetic (2)

Submitter Keywords

FROG (4)

First Public Date

2023 (65)
2024 (62)
2026 (51)
2025 (47)
2021 (47)
2022 (42)
2020 (41)
2019 (34)
2014 (30)
2017 (28)
2013 (27)
2016 (22)
2015 (22)
2018 (21)

Modelling Approach

Constraint-based model (5)

Study type

Transcription profiling by tiling array (10)
Transcription profiling by array (5)
RNA-seq of coding RNA (3)
Transcription profiling by high throughput sequencing (1)
Comparative genomic hybridization by array (1)
RNA-seq of non coding RNA (1)

Release Date

2023 (97)
2021 (93)
2024 (87)
2022 (87)
2018 (85)
2020 (84)
2019 (83)
2015 (81)
2025 (81)
2017 (76)
2016 (64)
2014 (57)
2013 (46)
2012 (31)
2011 (27)
2008 (21)
2009 (19)
2010 (16)
2026 (12)
2007 (12)
2004 (7)
2006 (6)
2005 (5)
2002 (5)
2000 (5)
1999 (5)
1998 (5)
2003 (4)
2001 (3)
1997 (1)

Lab affiliation

Centre of Biological Engineering, Minho University (4)
Virginia Tech, Department of Biochemistry (2)
Wageningen University (2)
Proteomic Platform of Institut de Microbiologie de la Mediterranee CNRS FR 3479 Marseille Proteomique (1)
Professor in Environmental Microbiology and Biotechnology,Section for Biotechnology Department of Chemistry and Bioscience, Aalborg University, Denmark (1)
Otto-von-Guericke University Magdeburg (1)
Department of Microbiology and Immunology, Montana State University, Bozeman, Montana, 59717 (1)
Institut Pasteur, Université Paris Cité, Unit Evolutionary Biology of Microbial Cell, Paris, France (1)
University of Tübingen Center for Applied Geosciences Environmental Biotechnology Group (1)
Otto von Guericke University Magdeburg (1)
Max Planck Institute for terrestrial Micriobiology Karl-von-Frisch Str. 10 35043 Marburg Germany (1)
Institute of Subtropical Agriculture,Chinese Academy of Sciences (1)
Radboud Proteomics Center, Translational Metabolic Laboratory, Department of Laboratory Medicine, Radboudumc (1)
Helmholtz Centre for Environmental Research GmbH - UFZ Department of Molecular Systems Biology Permoserstraße 15, 04318 Leipzig, Germany (1)
Onstott Lab, Department of Geosciences, Princeton University (1)
Max Planck Institute for Terrestrial Microbiology Karl-von-Frisch Str. 10 35043 Marburg Germany (1)
Department of Chemistry and Biochemistry, University of California, Los Angeles, CA,USA David Geffen School of Medicine, Department of Biological Chemistry, University of California, Los Angeles, CA, USA UCLA-DOE Institute, University of California, Los Angeles, CA, USA UCLA Molecular Biology Institute, University of California, Los Angeles, CA, USA (1)

1811 Results

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