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MetabolomicsMetabolome of pig endometrium and placenta.

Neonatal mortality is mostly due to a reduced piglet maturity. An essential question for adaptation to extra-uterine environment lies in the optimization of the crosstalk between maternal and fetal genomes for a distribution of resources that allows fetuses to express healthier phenotypes at birt...

2025-06-30 | MTBLS3091 | MetaboLights
TranscriptomicsRNA-seq of Mycobacterium tuberculosis H37Rv treated with alpibectir or a combination of alpibectir and ethionamide against untreated controls
Alpibectir potentiates the activity of ethionamide and prothionamide, which are second-line antibiotics used for tuberculosis treatment. Both are prodrugs whose antibacterial activity depends on bioactivation by oxidases, including the Baeyer-Villiger monooxygenase MymA. Alpibectir binds the transcr...
ORGANISM(S): Mycobacterium tuberculosis 
2025-12-10 | E-MTAB-16253 | biostudies-arrayexpress
GenomicsUnraveling cell type–specific and reprogrammable human replication origin signatures associated with G-quadruplex consensus motifs
Short nascent strands purification coupled to next-generation sequencing allowed us to identify replication origins on human genome in an extensive way, by mapping replication origins in 4 different cell types, IMR-90 fibroblasts, hESC H9 cells, iPSC Th Cl-4 cells and HeLa cells. We demonstrated the...
ORGANISM(S): Homo sapiens 
2012-07-01 | E-GEOD-37757 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Arabidopsis rosette growth complete" stage vs. flower buds harvested at the \"first flower open" stage for Columbia Genotype
Comparison of leaves harvested at the "rosette growth complete" stage (3.90 from Boyes et al.) versus flower buds harvested at the "first flower open" stage (6.0 from Boyes et al.), Columbia Genotype. Leaf sample : Around 3 leaves per plants on 50 individual plants. Flower sample : around 10 flower ...
ORGANISM(S): Arabidopsis thaliana 
2004-09-01 | E-MEXP-94 | biostudies-arrayexpress
Transcriptomicszip9_target_genes-Functional Characterization of AtbZIP9
au06-02_bzo2h - zip9_target_genes - Identify the target genes of the bZIP transcriptional regulator AtbZIP9 - three genotypes were grown in MS/2, 0,03% glicose (starvation) for 7 days under constant dim light. Three days dormancy break. Keywords: gene knock in (transgenic),gene knock out 9 dye-swap ...
ORGANISM(S): Arabidopsis thaliana 
2009-04-10 | E-GEOD-11140 | biostudies-arrayexpress
Transcriptomicsoxi1 transcriptome-Transcriptomic analysis on the effect of oxi1 mutation under high light.
cea13-01_oxi1 - oxi1 transcriptome - Transcriptomic analysis on the effect of oxi1 mutation under high light stress? - 5 weeks old mutannt (M) and wild type (WT) plants were exposed to high light and low temperature (1300-1350 µmol photons m-2s-1, 7°C/14°C day/night and 380ppm CO2) for 25 hours. ...
ORGANISM(S): Arabidopsis thaliana 
2014-10-01 | E-GEOD-61478 | biostudies-arrayexpress
Transcriptomicsseed development-Establishing the network of seed gene expression and analysis of its biodiversity
gnp3_tri33-arabidoseed - seed development - WP3 : Biodiversity of seed traits : state of the art - This experiment is a time course performed to choose the best harvesting point to maximise the number of detectable transcripts (8, 10, 12 and 14 dap). Keywords: time course 3 dye-swap - CATMA arrays
ORGANISM(S): Arabidopsis thaliana 
2010-05-18 | E-GEOD-16242 | biostudies-arrayexpress
Transcriptomicsseed specific genes-Establishing the network of seed gene expression and analysis of its biodiversity
gnp3_tri33-arabidoseed - seed specific genes - WP3 : Biodiversity of seed traits : state of the art - This experiment aimed to identify the genes expressed in the seeds vs siliques (easiest to harvest), and to know if the expression pattern of the whole silique could provide a valuable information. ...
ORGANISM(S): Arabidopsis thaliana 
2010-05-18 | E-GEOD-16244 | biostudies-arrayexpress
TranscriptomicsEmbryo seed development: Establishing the network of seed gene expression and analysis of its biodiversity
gnp3_tri33-arabidoseed. Embryo seed development. WP3: Biodiversity of seed traits: state-of-the-art. Analysis of the expression of small RNAs precursors in the seed development of Arabidopsis thaliana. 12 dye-swaps. Time course.
ORGANISM(S): Arabidopsis thaliana 
2011-04-22 | E-GEOD-28311 | biostudies-arrayexpress
Transcriptomicseqtl analysis (random pair design)-Establishing the network of seed gene expression and analysis of its biodiversity
gnp3_tri33-arabidoseed - eqtl analysis (random pair design) - WP3 : Biodiversity of seed traits : state of the art - Comparison of the developping seed transcriptome in 160 Bay0/Sha Recombinant Inbred Lines (RILs) at 10 days after pollinisation. Keywords: genotype and ecotype comparison 80 dye-swap...
ORGANISM(S): Arabidopsis thaliana 
2009-06-05 | E-GEOD-16393 | biostudies-arrayexpress
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