Microbial mats - OmicsDI

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Organisms

microbial mat metagenome (96)
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Thermosynechococcus sp. NK55a (1)
bacterium SCGC AB-137-L08 (1)
epsilon proteobacterium SCGC AB-706-J02 (1)
bacterium SCGC AAA018-L18 (1)

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CHEBI ID

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CHEBI:17196 (1)
CHEBI:17115 (1)

Metabolite Name

3-hydroxypentanoic acid (1)
3-hydroxybutyric acid (1)

First Public Date

2013 (69)
2014 (65)
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Classification

bacteria (4)

Study type

Transcription profiling by array (2)

Release Date

2017 (35)
2024 (34)
2020 (33)
2016 (33)
2023 (32)
2022 (32)
2018 (32)
2021 (30)
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2008 (5)
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2004 (3)
2003 (3)
2002 (2)
1998 (2)
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2000 (1)

Lab affiliation

Murray and Martha Ross Professor of Environmental Sciences, Department of Earth and Planetary Sciences, Harvard University, Cambridge, MA USA (2)
University of Calgary (2)
University of Illinois Urbana-Champaign (2)
Biological and Environmental Sciences and Engineering Division (BESE), Red Sea Research Centre (RSRC), King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia (1)
Department of Geoscience, University of Calgary, Calgary Ab, Canada (1)
Microbial Markets Lab, Department of Earth, Energy, and Environment, University of Calgary, Calgary, AB, Canada (1)
Energy Bioengineering and Geomicrobiology Group, Department of Geoscience, University of Calgary (1)
ETH Zurich (1)
Division of Glycoscience, School of Biotechnology, Royal Institute of Technology (KTH),Stockholm, Sweden (1)

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Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms

Dynamic environmental factors such as light, nutrients, salt, and temperature continuously affect chlorophototrophic microbial mats, requiring adaptive and acclimative responses to stabilize composition and function. Quantitative metabolomics analysis can provide insights into metabolite dynamics fo...

2024-02-23 | MTBLS187 | MetaboLights

13C or 15N labeled metaproteome of phototrophic microbial mats from Goodenough soda lake in the Cariboo Plateau region of British Columbia, Canada

In this study, we used 13C and 15N labeled substrates to assess the carbon (C) and nitrogen (N) assimilation by detecting 13C and 15N in proteins from microorganisms in the phototrophic microbial mats in a soda lake on the Cariboo Plateau, British Columbia, Canada. Metagenomic database used for prot...

ORGANISM(S): Cyanobacteria Gammaproteobacteria

2025-10-22 | PXD059992 | Pride

Microbial mats

Microbial mats Raw sequence reads

PRJNA1455683 | ENA

Middle Island Sinkhole Microbial Mat - Seasonality

Samples from benthic phototrophic microbial mats of Middle Island Sinkhole, Lake Huron, MI, USA. Peptides labeled in vitro for quantitative analysis by diDO-IPTL (Waldbauer et al. 2017 Anal. Chem.).

ORGANISM(S): Microbial Mat Metagenome (ncbitaxon:527640)

2022-01-20 | MSV000088706 | MassIVE

Contractile injection system in hot spring microbial mats

Omics approaches employed to study biological molecules have revolutionized environmental microbiology and elevated our understanding of ecological processes in the biosphere. However, conventional omics applications often lead to the loss of information about macromolecular organization of the mole...

ORGANISM(S): Bacteria

2026-03-23 | PXD071052 | Pride

Roseiflexus castenholziim Microbial mats Chloroflexota

Candelaria microbial mats

Candelaria microbial mats Metagenomic assembly

PRJNA1407138 | ENA

Onikobe Hot Spring Microbial Mats

Onikobe Hot Spring Microbial Mats Raw sequence reads

PRJNA863679 | ENA

metagenomes of microbial mats and assembled microbial genomes

Microbial mats from a hypersaline lagoon system

PRJNA675017 | ENA