Microspores - OmicsDI

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Transcriptomics (274)
Unknown (199)
Genomics (79)
Proteomics (23)
Metabolomics (3)
Methylation profiling (2)

Organisms

Arabidopsis thaliana (76)
Homo sapiens (50)
Apis mellifera (23)
Zea mays (16)
Oryza sativa (15)
Oryza sativa Japonica Group (14)
Saccharomyces cerevisiae (7)
Mus musculus (7)
Solanum lycopersicum (7)
Oryza sativa Indica Group (6)
Zea mays subsp. mays (4)
Gossypium hirsutum (3)
Vitis vinifera (3)
Triticum aestivum (3)
Hordeum vulgare (3)
Cryptomeria japonica (2)
Cryptopygus antarcticus (2)
Euphausia superba (2)
Paxillus involutus (2)
Arthrostemma ciliatum (1)
Cypripedium henryi (1)
Solanum chilense (1)
Nicotiana langsdorffii x Nicotiana sanderae (1)
Phaseolus coccineus (1)
Pseudotsuga menziesii (1)
Trichoplusia ni (1)
Urochloa decumbens (1)
Phaseolus vulgaris (1)
Solanum chacoense (1)
Vanderwaltozyma polyspora (1)

Organisms

Arabidopsis thaliana (11)
Oryza sativa (7)
Brassica napus (3)
Capsella rubella (2)
Solanum lycopersicum (2)
Nicotiana sylvestris (1)
Selaginella moellendorffii (1)
Hordeum vulgare (1)
Raphanus sativus (1)
Cryptomeria japonica (1)
Triticum aestivum (1)
Zea mays (1)
Zea mays subsp. mays (1)
Oryza sativa Japonica Group (1)
Nicotiana tabacum (1)

Repository

biostudies-arrayexpress (275)
ENA (58)
geo (23)
PAXDB (10)
pride (6)
MassIVE (4)
MetaboLights (3)
iProX (2)

Tissue

Pollen (4)
Plant cell (3)
Anther (1)
Flower bud (1)
Leaf (1)

Disease

Severe acute respiratory syndrome (2)
Normal (2)
Birch pollen allergy (1)

Technology Type

Mass Spectrometry (6)
Mass spectrometry (3)
SWATH MS (2)
Bottom-up proteomics (2)
Shotgun proteomics (2)

Instrument Platform

Illumina NovaSeq 6000 (23)
Illumina HiSeq 2000 (11)
Illumina HiSeq 2500 (7)
Vortex (5)
PromethION (4)
Illumina Genome Analyzer IIx (3)
Illumina MiSeq (3)
Liquid Chromatography MS - negative - reverse phase (3)
Axon GenePix 4000B scanning hardware (2)
Illumina HiSeq 1000 (2)
NextSeq 500 (2)
Liquid Chromatography MS - positive - reverse phase (2)
Agilent G2565CA (1)
PacBio RS II (1)
Agilent DNA Micrarray ScannerG2505Cer (1)
Illumina Genome Analyzer II (1)
Scanning hardware (1)
Illumina HiSeq 3000 (1)
Illumina HiSeq 4000 (1)
MicroTOF LC (1)
LTQ Orbitrap Velos (1)
Orbitrap Fusion (1)
TimsTOF Pro 2 (1)

Publication Date

2010 (37)
2013 (31)
2014 (27)
2012 (27)
2011 (27)
2016 (19)
2015 (19)
2022 (15)
2007 (15)
2008 (14)
2009 (13)
2021 (11)
2020 (10)
2025 (9)
2024 (9)
2023 (8)
2026 (7)
2018 (6)
2017 (5)
2005 (5)
2019 (4)
2004 (3)
2006 (2)

UNIPROT ID/AC

A1KYB0_TOBAC (3)
A0A1S3ZDG6_TOBAC (3)
A0A1S4CC76_TOBAC (3)
I7GVS5_TOBAC (3)
A0A1S3ZKW0_TOBAC (3)
METK1_TOBAC (3)
FRI1_TOBAC (3)
A0A140G1S2_TOBAC (3)
A0A1S4ARB9_TOBAC (3)
A0A1S3ZJA2_TOBAC (3)
A0A1S4CHM7_TOBAC (3)
A0A1S3Y5T4_TOBAC (3)
A0A1S4A1J2_TOBAC (3)
Q6Q8A6_TOBAC (3)
PMGI_TOBAC (3)
A0A1S3XU77_TOBAC (3)
A0A1S3XE25_TOBAC (3)
A0A1S4BMU1_TOBAC (3)
A0A1S4B543_TOBAC (3)
A0A1S3Z2K5_TOBAC (3)
A0A1S3Z744_TOBAC (3)
PDC2_TOBAC (3)
A0A140G1P7_TOBAC (3)
Q75ZD8_TOBAC (3)
A0A1S4C7C1_TOBAC (3)
Q1G0Z1_TOBAC (3)
A0A1S3YNC4_TOBAC (3)
IF411_TOBAC (3)
A0A1S4DBQ6_TOBAC (3)
A0A1S3XHC2_TOBAC (3)

CHEBI ID

CHEBI:66868 (1)
CHEBI:176269 (1)
CHEBI:190125 (1)
CHEBI:137338 (1)
CHEBI:178207 (1)
CHEBI:168923 (1)
CHEBI:190124 (1)
CHEBI:162301 (1)
CHEBI:160872 (1)
CHEBI:158509 (1)
CHEBI:166380 (1)
CHEBI:163925 (1)
CHEBI:94356 (1)
CHEBI:160603 (1)
CHEBI:163539 (1)
CHEBI:157921 (1)
CHEBI:164348 (1)
CHEBI:160103 (1)
CHEBI:28208 (1)
CHEBI:190123 (1)
CHEBI:164175 (1)
CHEBI:166113 (1)
CHEBI:163281 (1)
CHEBI:166198 (1)
CHEBI:164217 (1)
CHEBI:166212 (1)
CHEBI:164045 (1)
CHEBI:163208 (1)
CHEBI:161531 (1)
CHEBI:159852 (1)

Metabolite Name

Quercetin (2)
Cinnamic acid (2)
L-Tryptophan (2)
Thymidine (2)
L-Valine (2)
L-Phenylalanine (2)
Viteagnusin A (1)
Roupelliol (1)
Phenyl-¦Â-D-glucopyranoside (1)
Phanginin A (1)
Oxoassoanine N-oxide (1)
Multifidol Glucoside (1)
Isoorientin-7-O-(6''-p-coumaroyl)glucoside (1)
Gynoside A (1)
9,13-Epoxy-16-norlabda-13E-en-15-al (1)
7-hydroxy-N-trans-ferulic tyramine (1)
7-Hydroxy-1-methoxy-2,3-methylenedi-oxyxanthone-glucoside (1)
7-Hydroxy-1-methoxy-2,3-methylenedi-oxyxanthone-glucose-rhamnoside (1)
6-C-Methylquercetin-3-O-rhamnoside (1)
5,6,3',4'-Tetrahydroxy-3,7-dimethoxyflavone-6-O-glucoside (1)
3-Hydroxy-4',5,7-Trimethoxyflavanone (1)
2-hydroxy-3-{[3,4,5-trihydroxy-6-({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)oxan-2-yl]oxy}propyl octadeca-9,12-dienoate (1)
2-(3,4-dihydroxyphenyl)-5-hydroxy-7-{[(2s,4s,5s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3-{[(2s,5s)-3,4,5-trihydroxy-6-({[(2r,4s,5r)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}methyl)oxan-2-yl]oxy}chromen-4-one (1)
(2r,3s,4r,5s)-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)oxolane-3,4-diol (1)
(2r)-2-hydroxy-3-{[(2r,3r,4s,5r,6r)-3,4,5-trihydroxy-6-({[(2s,3r,4s,5r,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)oxan-2-yl]oxy}propyl hexadecanoate (1)
Viteagnusin B (1)
Val-Pro-Gln (1)
Val-His-Phe (1)
Tyr-Val-Ser (1)
Tyr-Val-Ala (1)

First Public Date

2025 (11)
2024 (8)
2026 (7)
2020 (6)
2014 (5)
2022 (4)
2019 (4)
2018 (3)
2017 (3)
2013 (3)
2023 (2)
2021 (1)
2015 (1)

Study type

Transcription profiling by array (130)
RNA-seq of coding RNA (57)
Comparative genomic hybridization by array (25)
RNA-seq of non coding RNA (18)
DNA-seq (7)
Plant - High-throughput sequencing (5)
ChIP-chip by array (5)
Methylation profiling by array (4)
Methylation profiling by high throughput sequencing (4)
Transcription profiling by tiling array (3)
ChIP-seq (3)
Unknown experiment type (2)
Genotyping by array (2)
RNA-seq of total RNA (2)
Transcription profiling by SAGE (1)
MNase-seq (1)
Animal - High-throughput sequencing (1)
ATAC-seq (1)
Single nucleus RNA sequencing (1)
Proteomic profiling by array (1)
Genotyping by high throughput sequencing (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2010 (39)
2013 (35)
2022 (33)
2016 (32)
2015 (30)
2014 (30)
2012 (29)
2011 (28)
2020 (22)
2019 (21)
2018 (21)
2023 (20)
2025 (18)
2021 (18)
2017 (18)
2024 (16)
2007 (15)
2009 (14)
2008 (14)
2026 (6)
2005 (6)
2004 (4)
2006 (3)
2003 (1)
2001 (1)

Lab affiliation

Department of Biological Sciences at Macquarie University (3)
Molecular Systems Biology (1)
University of Münster, Institute of Plant Biology and Biotechnology (IBBP), Green Biotechnology, 48143 Münster, Germany (1)
USDA-ARS (1)

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Heat stress induced proteomes in tomato pollen mother cells and microspores

During the reproductive stage, tomatoes require nighttime temperatures below 21°C and daytime temperatures below 32°C for healthy flower development and fruit set. Prolonged exposure to temperatures above the optimal range can cause abnormalities in pollen development, leading to reduced fertility o...

ORGANISM(S): Solanum lycopersicum

2025-05-07 | PXD060801 | Pride

Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA.

Epigenetic inheritance is more widespread in plants than in mammals, in part because mammals erase epigenetic information each generation by germline reprogramming. To assess the extent of germline reprogramming in plants, we sequenced the methylome of three haploid cell types from developing pollen...

ORGANISM(S): Arabidopsis thaliana

2012-08-31 | E-GEOD-40501 | biostudies-arrayexpress

RNA sequencing of rapeseed microspores

PRJNA1331934 | ENA

Formation and excretion of autophagic plastids (plastolysomes) in Brassica napus embryogenic microspores.

Not available

S-EPMC4333807 | biostudies-literature

Transcriptome profiling of male gametophyte development in Nicotiana tabacum

Transcriptome profiling of three developmental stages of immature male gametophyte intobacco (Nicotiana tabacum) Total RNA isolated from tobacco microspores and early and late bicellular pollen was hybridised on Agilent Tobacco Gene Expression Microarray 4x44K in two biological replicates per sample

ORGANISM(S): Nicotiana tabacum

2014-10-16 | E-GEOD-62349 | biostudies-arrayexpress

RNAseq of microspores of Botrytis cinerea

PRJNA1538031 | ENA

Targeted mutagenesis in wheat microspores using CRISPR/Cas9.

Not available

S-EPMC5916876 | biostudies-literature

FACS-based purification of Arabidopsis microspores, sperm cells and vegetative nuclei.

Not available

S-EPMC3502443 | biostudies-literature

Sporophytic control of pollen meiotic progression is mediated by tapetum expression of ABORTED MICROSPORES.

Not available