Mills David A DA

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Unknown (74)
Proteomics (6)
Transcriptomics (5)
Metabolomics (2)

Organisms

Mus musculus (2)
Homo sapiens (2)
Alphavirus (2)
Anemia (2)
Betaherpesvirinae (2)
Borrelia (2)
Clostridium perfringens (2)
Cowpox virus (2)
Coxsackievirus (2)
Cytomegalovirus (2)
Dengue virus (2)
EFO:0001352 (2)
Filoviridae (2)
Hepatitis B virus (2)
Human alphaherpesvirus 1 (2)
Human betaherpesvirus 5 (2)
Human immunodeficiency virus (2)
Human immunodeficiency virus 1 (2)
Human immunodeficiency virus 2 (2)
Influenza A virus (2)
Influenza C virus (2)
Japanese encephalitis virus group (2)
Listeria monocytogenes (2)
Lyssavirus rabies (2)
Mammarenavirus (2)
Orthopoxvirus vaccinia (2)
Rattus (2)
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 (1)
Bifidobacterium bifidum (1)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (5)
MassIVE (2)
MetaboLights (2)
PeptideAtlas (2)
pride (2)

Tissue

Female Reproductive System (1)
Ovary (1)
Mammary epithelial cell (1)
Mammary gland epithelial cell (1)
Prokaryotic cell (1)

Disease

High Grade Ovarian Serous Adenocarcinoma (1)

Technology Type

Mass Spectrometry (2)
Shotgun proteomics (2)
NMR spectroscopy (1)
Mass spectrometry (1)

Instrument Platform

LTQ Orbitrap Velos (3)
LTQ Orbitrap Elite (2)
LTQ Orbitrap XL (2)
Q Exactive (2)
Illumina HiSeq 2500 (1)
LTQ Velos (1)
Nuclear Magnetic Resonance (NMR) - (1)

Publication Date

2015 (2)
2018 (2)
2014 (2)
2017 (1)
2010 (1)
2007 (1)
2019 (1)
2025 (1)
2024 (1)
2016 (1)

UNIPROT ID/AC

A0A024R563 (2)
A0A024R8H9 (2)
A0A024RAN2 (2)
A0A024RC46 (2)
A0A087WT59 (2)
A0A087WTX5 (2)
A0A087WVW2 (2)
A0A087WWK8 (2)
A0A087WYL9 (2)
A0A087WZE9 (2)
A0A087X130 (2)
A0A087X1V9 (2)
A0A087X232 (2)
A0A0A0MR66 (2)
A0A0A0MS07 (2)
A0A0A0MS51 (2)
A0A0A0MSA7 (2)
A0A0C4DG89 (2)
A0A0C4DGT3 (2)
A0AVT1 (2)
A0FGR8 (2)
A0FGR8-2 (2)
A0FGR8-6 (2)
A0JLT2 (2)
A0JNW5 (2)
A0M8Q6 (2)
A0MZ66 (2)
A0N5G5 (2)
A1IGU5 (2)
A1L020 (2)

ENSEMBL ID

ENSG00000147251 (2)
ENSG00000204131 (2)
ENSG00000229353 (2)
ENSG00000247315 (2)
ENSG00000170477 (1)

CHEBI ID

CHEBI:37084 (2)
CHEBI:17754 (2)
CHEBI:9349 (2)
CHEBI:78320 (2)
CHEBI:39548 (1)
CHEBI:195382 (1)
CHEBI:185936 (1)
CHEBI:49575 (1)
CHEBI:64354 (1)
CHEBI:9637 (1)
CHEBI:3640 (1)
CHEBI:89884 (1)
CHEBI:6807 (1)
CHEBI:16473 (1)
CHEBI:72291 (1)
CHEBI:76010 (1)
CHEBI:3996 (1)
CHEBI:6541 (1)
CHEBI:9398 (1)
CHEBI:50730 (1)
CHEBI:53289 (1)
CHEBI:3732 (1)
CHEBI:173668 (1)
CHEBI:180534 (1)
CHEBI:190806 (1)
CHEBI:192798 (1)
CHEBI:133684 (1)
CHEBI:167215 (1)
CHEBI:193172 (1)
CHEBI:47276 (1)

Metabolite Name

Oxindolylalanine (1)
Diazepam (1)
Torasemide (1)
Acetazolamide (1)
Chlorothiazide (1)
Ampicillin (1)
Picolinoylglycine (1)
Methadone (1)
Darunavir (1)
Lamivudine (1)
Emtricitabine (1)
Cyclobenzaprine (1)
Losartan (1)
Meloxicam (1)
Tamsulosin (1)
Montelukast (1)
Donepezil (1)
Trimethoprim (1)
2-ketocaprylate (1)
7-hydroxywarfarin (1)
10-hydroxywarfarin (1)
4-hydroxy duloxetine glucuronide* (1)
Citalopram N-oxide* (1)
Sulfociprofloxacin* (1)
Deoxycholic acid glucuronide (1)
2-naphthol sulfate (1)
6-bromotryptophan (1)
2-hydroxysebacate (1)
Ethyl beta-glucopyranoside (1)
2,2'-methylenebis(6-tert-butyl-p-cresol) (1)

Study type

RNA-seq of coding RNA (3)
ChIP-chip by array (1)
Transcription profiling by array (1)

Release Date

2025 (15)
2023 (10)
2022 (10)
2021 (10)
2014 (8)
2017 (4)
2015 (4)
2020 (4)
2012 (3)
2024 (2)
2011 (2)
2010 (1)
2007 (1)
2019 (1)
2018 (1)
2016 (1)
2013 (1)
2008 (1)

Lab affiliation

Department of Food Science and Technology University of California, Davis (1)
MPI of Biophysics and MPI for Brain Research (1)

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Transcription profiling of heart left ventricles from 15 week old inbred COP, DA, and F1(COP x DA) offspring with respect to aerobic running capacity (low, high, and intermediate performers respectively)

We used high density oligonucleotide arrays to measure the relative expression levels of ~27,000 probe sets in the left ventricles of inbred rat strains; DA (high performing), Copenhagen (COP, low performing), as well as F1(COPxDA) rats bred from these tw

ORGANISM(S): Rattus norvegicus

2007-09-13 | E-GEOD-1795 | biostudies-arrayexpress

Oral dysbiosis initiates periodontal disease in experimental kidney disease

BACKGROUND AND HYPOTHESIS: It is presently unclear why there is a high prevalence of periodontal disease in individuals living with chronic kidney disease. Whilst some have argued that periodontal disease causes chronic kidney disease, we hypothesized that alterations in saliva ...

2025-09-04 | MTBLS1833 | MetaboLights

RNA sequencing of Bifidobacterium longum subsp. infantis in response to various substrates

The purpose of this project was to determine the whole transcriptome response of Bifidobacterium longum subsp. Infantis to pooled and individual human milk oligosaccharides (HMO) relative to lactose Bacterial isolates grown on lactose, pooled human milk oligosaccharides (HMO), lacto-N-tetraose (LNT)...

ORGANISM(S): Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088

2015-10-28 | E-GEOD-58773 | biostudies-arrayexpress

RNA sequencing of Bifidobacterium bifidum SC555 in response to various substrates

The purpose of this project was to determine the whole transcriptome response of Bifidobacterium bifidum SC555 to pooled and individual human milk oligosaccharides (HMO) relative to lactose Bacterial isolates grown on lactose, pooled human milk oligosaccharides (HMO), lacto-N-tetraose (LNT), lacto-N...

ORGANISM(S): Bifidobacterium bifidum

2015-10-28 | E-GEOD-59053 | biostudies-arrayexpress

Kefir peptide profiling - Peptidomic analysis reveals proteolytic activity of kefir microorganisms on bovine milk proteins

This study examines the proteolytic activity of the kefir grains (a combination of bacteria and yeast) on bovine milk proteins. SDS-PAGE analysis reveals substantial digestion of milk proteins by the kefir grains in comparison with control samples. Mass spectrometric analysis reveals that the kefir ...

ORGANISM(S): Bos taurus (Bovine)

2016-05-09 | PXD001826 | Pride

Intralesional collagenase Clostridium histolyticum for acute phase Peyronie's disease: a single-center, retrospective cohort study.

Not available

S-EPMC9459553 | biostudies-literature

Features of acute COVID-19 associated with post-acute sequelae of SARS-CoV-2 phenotypes: results from the IMPACC study

Post-acute sequelae of SARS-CoV-2 (PASC) is a significant public health concern. We describe Patient Reported Outcomes (PROs) on 590 participants prospectively assessed from hospital admission for COVID-19 through one year after discharge. Modeling identified 4 PRO clusters based on reported deficit...

2024-01-12 | MTBLS850 | MetaboLights

RNA-seq of whole lungs from Irgm1-/- and wildtype littermates mice that were either uninfected or infected with influenza for 3, 6, or 10 days

We found that a dose of influenza (5,000 pfu of recombinant influenza A/WSN/33 (rWSN) H1N1 virus strain) that resulted in 50% mortality in wildtype littermate control mice showed minimal mortality in Irgm1-/- mice, indicating that Irgm1 deficiency was protective during influenza infection. This prot...

ORGANISM(S): Mus musculus

2017-08-08 | E-MTAB-5337 | biostudies-arrayexpress

SIRT1 and H1AcK26 promoter-association in mouse ES cells changes upon oxidative stress

Association of the (histone) deacetylase SIRT1 with promoters was assessed to determine putative SIRT1-regulated genes. Based on the observation that the SIRT1 yeast ortholog Sir2 redistributes across the yeast genome in repsonse to genotoxic stress and double strand breaks (DSBs), we investigated t...