Min Wu W - OmicsDI

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Unknown (961)
Proteomics (455)
Transcriptomics (307)
Metabolomics (84)
Genomics (46)
Models (1)

Organisms

Homo sapiens (347)
Mus musculus (202)
Escherichia coli (26)
Rattus norvegicus (23)
Saccharomyces cerevisiae (20)
Arabidopsis thaliana (20)
Oryza sativa (13)
Drosophila melanogaster (9)
Danio rerio (7)
Sus scrofa (5)
Salmonella enterica subsp. enterica serovar Typhimurium str. 14028s Wu (4)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (3)
Campylobacter jejuni (3)
Triticum aestivum (3)
Nitrosomonas europaea ATCC 19718 (2)
Methanobrevibacter smithii ATCC 35061 (2)
Gasterosteus aculeatus (2)
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Schizosaccharomyces pombe (2)
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Mycobacterium tuberculosis (2)
Solanum lycopersicum (2)
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Aplysina aerophoba (1)
Phaseolus coccineus (1)
Mycobacterium avium subsp. paratuberculosis K-10 (1)
Streptomyces hygroscopicus subsp. jinggangensis TL01 (1)
Nannochloropsis oceanica (1)
Streptomyces hygroscopicus subsp. jinggangensis 5008 (1)
Phaseolus vulgaris (1)

Repository

pride (433)
biostudies-arrayexpress (340)
MetaboLights (82)
iProX (16)
EGA (15)
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Tissue

Cell culture (115)
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Disease

Disease free (16)
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Type 2 diabetes mellitus (2)
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None (1)
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Normal (1)
Abnormality of prenatal development or birth (1)
Age related macular degeneration (1)
Alopecia (1)
Amyloidosis (1)
Amyotrophic lateral sclerosis (1)
Brain cancer (1)
Cancer (1)

Technology Type

Mass Spectrometry (433)
Shotgun proteomics (236)
Mass spectrometry (67)
Bottom-up proteomics (57)
Data-dependent acquisition (46)
Affinity purification coupled with mass spectrometry proteomics (36)
Gel-based experiment (32)
Data-independent acquisition (19)
SWATH MS (17)
Top-down proteomics (13)
Chemical cross-linking coupled with mass spectrometry proteomics (11)
SRM/MRM (10)
Mass spectrometry assay (8)
NMR spectroscopy (8)
Proteogenomics (6)
Immunopeptidomics (4)
Affinity proteomics (3)
All-ion fragmentation (3)
Mass spectrometry imaging (2)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Illumina HiSeq 2000, Illumina_2.5M (1)
DiaPASEF (1)
HDMSE (1)
Metaproteomics (1)
RNA mass spectrometry (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (31)
Liquid Chromatography MS - negative - reverse phase (29)
Illumina NovaSeq 6000 (18)
Liquid Chromatography MS - positive - hilic (12)
Liquid Chromatography MS - negative - hilic (10)
Illumina HiSeq 4000 (7)
Illumina HiSeq 2500 (4)
Illumina HiSeq 2000 (4)
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GenePix 4000B [Axon Instruments] (2)
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Xevo G2-XS QTof (2)
10X Chromium Nuclei Isolation Kit (1)
Chromium Next GEM Single Cell Multiome ATAC + Gene Expression Reagent Bundle, (1)
10x Chromium with a target of 5,000 cells. Chromium Single Cell 3’ Library & Gel Bead Kit v2 (1)
10X Genomics reagent kit (1)
Helicos (1)
418 [Affymetrix] (1)
ScanArray Express HT [PerkinElmer] (1)
NA (1)
N/A (1)
MinION (1)
TSQ Quantis (1)
6550 iFunnel Q-TOF LC/MS (1)
LTQ Orbitrap Velos (1)
Orbitrap Fusion Lumos (1)

Publication Date

2021 (84)
2023 (81)
2024 (78)
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2022 (72)
2013 (55)
2026 (53)
2015 (53)
2014 (52)
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2016 (29)
2010 (27)
2018 (21)
2009 (16)
2017 (14)
2008 (8)
2007 (5)
2006 (2)
2005 (2)
2003 (1)

CHEBI ID

CHEBI:16919 (31)
CHEBI:16704 (29)
CHEBI:17368 (29)
CHEBI:30769 (29)
CHEBI:15354 (28)
CHEBI:16040 (28)
CHEBI:16737 (27)
CHEBI:17895 (27)
CHEBI:17351 (26)
CHEBI:17750 (26)
CHEBI:15891 (25)
CHEBI:16828 (25)
CHEBI:17295 (25)
CHEBI:17596 (25)
CHEBI:16335 (24)
CHEBI:16643 (24)
CHEBI:17154 (24)
CHEBI:17568 (24)
CHEBI:7916 (24)
CHEBI:15741 (23)
CHEBI:15756 (23)
CHEBI:15971 (23)
CHEBI:16015 (23)
CHEBI:16347 (23)
CHEBI:16467 (23)
CHEBI:16750 (23)
CHEBI:17203 (23)
CHEBI:30915 (23)
CHEBI:15428 (22)
CHEBI:16708 (22)

Metabolite Name

Choline (20)
Hypoxanthine (20)
Adenosine (19)
Cytosine (19)
Creatinine (18)
L-Arginine (17)
L-Phenylalanine (17)
Adenine (16)
Betaine (16)
Creatine (16)
Uridine (16)
Guanosine (15)
Glycerophosphocholine (14)
L-Carnitine (14)
L-Tryptophan (14)
L-Tyrosine (14)
Uracil (14)
Cytidine (13)
L-Glutamine (13)
L-Histidine (13)
L-Proline (13)
Inosine (12)
L-Leucine (12)
L-Methionine (12)
Valine (12)
Xanthine (12)
L-Valine (11)
Pantothenic acid (11)
Phytosphingosine (11)
Riboflavin (11)

IsPrivate

False (1)

Submitter Keywords

TransQST (1)

Modelling Approach

Ordinary differential equation model (1)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (176)
RNA-seq of coding RNA (57)
ChIP-seq (23)
RNA-seq of coding RNA from single cells (15)
ChIP-chip by tiling array (12)
Methylation profiling by array (10)
Comparative genomic hybridization by array (9)
Methylation profiling by high throughput sequencing (8)
Other (7)
ChIP-chip by array (3)
Transcription profiling by SAGE (2)
Human - Single-cell sequencing (2)
RIP-seq (2)
MicroRNA profiling by array (2)
RNA-seq of non coding RNA (2)
Transcription profiling by high throughput sequencing (1)
Cell line - Single-cell sequencing (1)
RNA-seq of non coding RNA from single cells (1)
Animal - Single-cell sequencing (1)
Human - High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
Transcription profiling by RT-PCR (1)
RNA-seq of total RNA (1)

Release Date

2022 (171)
2025 (143)
2023 (130)
2024 (128)
2021 (117)
2020 (83)
2013 (69)
2015 (64)
2014 (63)
2019 (51)
2011 (48)
2016 (40)
2012 (38)
2017 (32)
2010 (32)
2026 (25)
2018 (25)
2009 (18)
2008 (9)
2007 (7)
2005 (3)
2006 (2)
2001 (2)
2003 (1)

Lab affiliation

Bioplatforms Australia (7)
Peking University (4)
Zhejiang University (4)
Rochester Institute of Technology (3)
Shanghai Jiao Tong University (3)
State Key Laboratory of Genetic Engineering, Department of Biochemistry and Biophysics, School of Life Sciences, Fudan University, Shanghai 200438, China (3)
wuhan union hospital (3)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (2)
College of Agronomy, Jiangxi Agricultural University (2)
Department of Biology, University of Fribourg Chemin du Musée 10, 1700 Fribourg, Switzerland T +41 26 300 8631 E joern.dengjel@unifr.ch (2)
Department of Chemical and Biological Engineering, The Hong Kong University of Science and Technology (HKUST) (2)
Department of Stomatology, Nanfang Hospital, Southern Medical University, Guangzhou, China, 510515 (2)
Department of Urology, Zhongshan Hospital (Xiamen), Fudan University, Xiamen, China (2)
Energy Metabolism Laboratory, Institute of Translational Medicine, Department of Health Sciences and Technology, Swiss Federal Institute of Technology (ETH) Zurich, Schwerzenbach, CH-8603, Switzerland (2)
First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China (2)
Harbin Medical University (2)
Institute of Biochemistry, University of Kiel (2)
Institute of Biological Chemistry, Academia Sinica, Taipei, 115201, Taiwan Institute of Biochemical Sciences, National Taiwan University, Taipei, 106319, Taiwan International Institute for Sustainability with Knotted Chiral Meta Matter (SKCM2), Hiroshima University, Hiroshima, 739-8511, Japan (2)
Institute of Biophysics, Chinese Academy of Sciences (2)
Institute of Marine Sciences and Guangdong Provincial Key Laboratory of Marine Biotechnology, Shantou University, Shantou 515063, China (2)
Jiangsu Key Laboratory of Crop Genetics and Physiology/Co-Innovation Center for Modern Production Technology of Grain Crops, Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, Yangzhou 225009, China (2)
Key Lab of Integrated Crop Pest Management of Shandong, College of Plant Health and Medicine, Qingdao Agricultural University, Qingdao, China (2)
Nanjing Medical University (2)
Nanjing University (2)
National Key Laboratory of Medical Molecular Biology & Department of Immunology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences (2)
National Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University, China (2)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (2)
SJTU (2)
School of Pharmaceutical Science, Sun Yat-sen University, China (2)
School of life sciences,Nanjing University,Nanjing,China (2)

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Safety and efficacy of lesion size index guided 50 W radiofrequency ablation in patients with paroxysmal atrial fibrillation.

Not available

S-EPMC11887063 | biostudies-literature

Hybrid Mimics and Hybrid Vigor in Arabidopsis (F6 data)

F1 hybrids can outperform their parents in yield and vegetative biomass, features of hybrid vigor which form the basis of the hybrid seed industry. The yield advantage of the F1 is lost in the F2 and subsequent generations. In Arabidopsis, from F2 plants which have a F1 â€“like phenotype, we have ...

ORGANISM(S): Arabidopsis thaliana

2015-08-17 | E-GEOD-64742 | biostudies-arrayexpress

Light-Driven, Super-Fast Self-Healing Transparent MXene/W<sub>18</sub>O<sub>49</sub>/Polyurethane Films with Superior Toughness for Thermal Management.

Not available

S-EPMC12463129 | biostudies-literature

Hybrid Mimics and Hybrid Vigor in Arabidopsis (F4 data)

ORGANISM(S): Arabidopsis thaliana

2015-08-17 | E-GEOD-64740 | biostudies-arrayexpress

Down-regulated γ-catenin expression is associated with tumor aggressiveness in esophageal cancer.

Not available

S-EPMC4024793 | biostudies-literature

Acute effect of acetazolamide on exercise haemodynamics in patients with pulmonary arterial and chronic thromboembolic pulmonary hypertension: a randomised controlled trial.

Not available

S-EPMC12107381 | biostudies-literature

NaCl Stress in Desulfovibrio vulgaris Hildenborough (Series 2)

Increased salinity constitutes an important and frequent fluctuation faced by D. vulgaris in its natural habitat. Using data from microarray experiments, we investigated the effects of excess NaCl on D. vulgaris. Keywords: stress response, time course Comparison of cells treated with 250mM NaCl to u...

ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

2010-06-11 | E-GEOD-4510 | biostudies-arrayexpress

NaCl Stress in Desulfovibrio vulgaris Hildenborough (Series 1)

ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

2006-03-21 | E-GEOD-4504 | biostudies-arrayexpress

Microarray analysis of gene expression in the kidneys and testes of mice after low-dose-rate irradiation

Measuring global gene expression using cDNA or oligonucleotide microarrays is an effective approach to understanding the complex mechanisms of the effects of radiation. However, few studies have been carried out that investigate gene expression in vivo after prolonged exposure to low-dose-rate radia...

ORGANISM(S): Mus musculus

2009-05-27 | E-GEOD-14290 | biostudies-arrayexpress

Time course microarray data following GR activation in MCF10A-Myc breast cells

This series contain time course microarray data from MCF10A-Myc cells treated with either ethanol or Dexamethasone for 30 min, 2 hr, 4 hr, and 24 hr. This series contains three biological replicates that were analyzed as independent replicate experiments (data were normalized within each replicate e...

ORGANISM(S): Homo sapiens

2006-06-01 | E-GEOD-4917 | biostudies-arrayexpress

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