Mitchell J J - OmicsDI

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Unknown (4535)
Proteomics (136)
Transcriptomics (88)
Genomics (53)
Metabolomics (12)
Genomic (3)
Multiomics (2)
Models (1)
Other (1)

Organisms

Homo sapiens (127)
Mus musculus (45)
Saccharomyces cerevisiae (5)
Danio rerio (5)
Bos taurus (4)
Anopheles gambiae (3)
Caenorhabditis elegans (3)
Candida albicans (3)
Streptococcus pneumoniae (2)
Rattus norvegicus (2)
Drosophila melanogaster (2)
Arabidopsis thaliana (2)
Colinus virginianus (1)
Clostridium botulinum (1)
Myxococcus xanthus (1)
Salix purpurea (1)
Treponema denticola (1)
Porphyromonas gingivalis (1)
Helicobacter pylori (1)
Triticum aestivum (1)
Gallus gallus (1)
Pseudomonas putida KT2440 (1)
Aenocyon dirus (1)
Akkermansia muciniphila ATCC BAA-835 (1)
Campylobacter concisus 13826 (1)
Campylobacter concisus UNSWCD (1)
Caulobacter vibrioides NA1000 (1)
Enterococcus faecalis (1)
Haemonchus contortus (1)
Halanaerobium congolense (1)

Organisms

Streptomyces cavourensis (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (95)
pride (64)
EGA (45)
PeptideAtlas (30)
MassIVE (22)
PAXDB (15)
MetaboLights (12)
dbGaP (3)
ENA (3)
PanoramaPublic (2)
BioModels (1)
GPMDB (1)
iProX (1)

Tissue

Others (13)
Cell culture (8)
Epithelial cell (6)
Colon (5)
Heart (4)
Liver (4)
Lung (4)
Blood (3)
Blood cell (2)
Blood plasma (2)
Blood serum (2)
Bone marrow (2)
Leaf (2)
Monocyte (2)
Ovarian serous carcinoma cell (2)
T cell (2)
Adrenal gland (1)
Amniotic fluid (1)
B cell (1)
B-lymphocyte (1)
Biofilm (1)
Blood platelet (1)
Brain (1)
Breast (1)
Breast cancer cell line (1)
Cell suspension culture (1)
Cerebrospinal fluid (1)
Choroidal melanocyte (1)
Cytotoxic T-lymphocyte (1)
Early embryonic cell (1)

Disease

Non-small cell lung carcinoma (3)
Acute leukemia (2)
Breast cancer (2)
Colitis (2)
Colon cancer (2)
Melanoma (2)
Not Available (1)
Breast ductal carcinoma (1)
Cervix carcinoma (1)
Haemonchiasis (1)
Long COVID (1)
Lymphoma (1)
Malignant neoplasm of ovary (1)
Ovarian serous carcinoma (1)
Pancreatic cancer (1)
Plasmodium vivax malaria (1)
Ulcerative colitis (1)
Unusual infection (1)
Uveal melanoma (1)

Technology Type

Mass Spectrometry (64)
Shotgun proteomics (38)
Bottom-up proteomics (14)
Mass spectrometry (10)
Affinity purification coupled with mass spectrometry proteomics (9)
Illumina 15K (8)
Data-dependent acquisition (6)
Data-independent acquisition (5)
NMR spectroscopy (2)
Gel-based experiment (2)
Top-down proteomics (2)
Affymetrix OncoScan FFPE Express (1)
HiSeq X Ten, ILLUMINA (1)
Illumina HiSeq 2000 (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
Immunopeptidomics (1)
SWATH MS (1)

Instrument Platform

LTQ Orbitrap Velos (16)
Illumina NovaSeq 6000 (7)
Q Exactive Plus (7)
Q Exactive (5)
Orbitrap Fusion Lumos (3)
Q Exactive HF (3)
IScan (2)
Illumina HiSeq 2000 (2)
LTQ Orbitrap Elite (2)
Orbitrap Eclipse (2)
Q Exactive HF-X (2)
Illumina Genome Analyzer IIx (1)
NanoDrop (1)
Illumina Genome Analyzer II (1)
Illumina HiSeq 4000 (1)
Instrument (1)
6140 Quadrupole LC/MS (1)
7000A Triple Quadrupole GC/MS (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion (1)
TimsTOF (1)
TimsTOF SCP (1)
5975C Series GC/MSD (Agilent) (1)
API 5500 QTRAP (AB Sciex) (1)
Bruker (1)
Direct infusion MS - alternating (1)
Direct infusion MS - positive (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2014 (45)
2011 (23)
2015 (17)
2025 (15)
2023 (14)
2024 (13)
2026 (12)
2022 (12)
2019 (11)
2016 (10)
2013 (10)
2010 (10)
2021 (10)
2012 (9)
2020 (7)
2007 (7)
2017 (4)
2008 (4)
2009 (3)
2018 (2)
2005 (1)

UNIPROT ID/AC

143BA_DANRE (15)
143BB_DANRE (15)
143G1_DANRE (15)
7955.ENSDARP00000023429 (15)
7955.ENSDARP00000067603 (15)
7955.ENSDARP00000067945 (15)
7955.ENSDARP00000082327 (15)
7955.ENSDARP00000093747 (15)
7955.ENSDARP00000093780 (15)
7955.ENSDARP00000093791 (15)
7955.ENSDARP00000093801 (15)
7955.ENSDARP00000096295 (15)
7955.ENSDARP00000096352 (15)
7955.ENSDARP00000098342 (15)
7955.ENSDARP00000098726 (15)
7955.ENSDARP00000099550 (15)
7955.ENSDARP00000100434 (15)
7955.ENSDARP00000101311 (15)
7955.ENSDARP00000101467 (15)
7955.ENSDARP00000101525 (15)
7955.ENSDARP00000101862 (15)
7955.ENSDARP00000102682 (15)
7955.ENSDARP00000102749 (15)
7955.ENSDARP00000102775 (15)
7955.ENSDARP00000103208 (15)
7955.ENSDARP00000103318 (15)
7955.ENSDARP00000103819 (15)
7955.ENSDARP00000104168 (15)
7955.ENSDARP00000104379 (15)
7955.ENSDARP00000104630 (15)

ENSEMBL ID

ENSDARG00000000103 (17)
ENSDARG00000001431 (17)
ENSDARG00000001915 (17)
ENSDARG00000001950 (17)
ENSDARG00000001993 (17)
ENSDARG00000002480 (17)
ENSDARG00000005039 (17)
ENSDARG00000005560 (17)
ENSDARG00000005791 (17)
ENSDARG00000006399 (17)
ENSDARG00000007219 (17)
ENSDARG00000009285 (17)
ENSDARG00000009484 (17)
ENSDARG00000010149 (17)
ENSDARG00000013078 (17)
ENSDARG00000016301 (17)
ENSDARG00000016393 (17)
ENSDARG00000017014 (17)
ENSDARG00000017624 (17)
ENSDARG00000018404 (17)
ENSDARG00000021124 (17)
ENSDARG00000022767 (17)
ENSDARG00000023323 (17)
ENSDARG00000025012 (17)
ENSDARG00000025301 (17)
ENSDARG00000025350 (17)
ENSDARG00000025635 (17)
ENSDARG00000027355 (17)
ENSDARG00000029406 (17)
ENSDARG00000031164 (17)

CHEBI ID

CHEBI:15891 (6)
CHEBI:15354 (5)
CHEBI:15428 (5)
CHEBI:16113 (5)
CHEBI:16335 (5)
CHEBI:16811 (5)
CHEBI:16958 (5)
CHEBI:17126 (5)
CHEBI:17268 (5)
CHEBI:17368 (5)
CHEBI:17568 (5)
CHEBI:18211 (5)
CHEBI:18237 (5)
CHEBI:27570 (5)
CHEBI:28044 (5)
CHEBI:28300 (5)
CHEBI:28757 (5)
CHEBI:7916 (5)
CHEBI:15356 (4)
CHEBI:15611 (4)
CHEBI:15727 (4)
CHEBI:15728 (4)
CHEBI:16027 (4)
CHEBI:16040 (4)
CHEBI:16393 (4)
CHEBI:16449 (4)
CHEBI:16450 (4)
CHEBI:16610 (4)
CHEBI:16668 (4)
CHEBI:16704 (4)

Metabolite Name

Adenine (4)
Adenosine (4)
Alanine (4)
Beta-alanine (4)
Citrulline (4)
Cytosine (4)
Fructose (4)
Glutamate (4)
Glycine (4)
Hypoxanthine (4)
Lactate (4)
Myo-inositol (4)
Putrescine (4)
Spermidine (4)
Thymine (4)
Uracil (4)
Xanthine (4)
1-(1-enyl-palmitoyl)-GPE (P-16:0)* (3)
1-(1-enyl-stearoyl)-GPE (P-18:0)* (3)
1-methyl-4-imidazoleacetate (3)
1-methylguanidine (3)
1-methylnicotinamide (3)
1-palmitoyl-2-docosahexaenoyl-GPC (16:0/22:6) (3)
1-palmitoyl-2-oleoyl-GPC (16:0/18:1) (3)
1-palmitoyl-2-palmitoleoyl-GPC (16:0/16:1)* (3)
1-palmitoyl-2-stearoyl-GPC (16:0/18:0) (3)
1-palmitoyl-GPC (16:0) (3)
1-palmitoyl-GPE (16:0) (3)
1-palmitoyl-GPI (16:0) (3)
1-stearoyl-2-arachidonoyl-GPC (18:0/20:4) (3)

First Public Date

2024 (1)
2023 (1)
2021 (1)

Modelling Approach

Mathematical model (1)

Lab affiliation

CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (3)
Indiana University School of Medicine (2)
Infection Program, Monash Biomedicine Discovery Institute, Department of Microbiology, Monash University, VIC 3800, Australia (2)
School of Biotechnology and Biomolecular Sciences (2)
University of Wisconsin-Madison (2)
733 N. Broadway Miller Research Building room 527 Johns Hopkins University Baltimore, MD 21205 (1)
Adele Niessen Professor of Ophthalmology Vice Chair for Research FM Kirby Center for Molecular Ophthalmology Scheie Eye Institute University of Pennsylvania (1)
BGI-Shenzhen (1)
BioArCh, Department of Archaeology, University of York (1)
Bioanalytical Mass Spectrometry Group, Max Planck Institute for Multidisciplinary Sciences, Am Fassberg 11, 37077 Goettingen, Germany (1)
Bioeconomy Science Institute / AgResearch group, Lincoln, New Zealand (1)
CARF Proteomics and Small Molecule Mass Spectrometry, Queensland University of Technology (1)
CRUK Beatson Institute (1)
Cancer Research UK Beatson Institute (1)
Cell Biology Harvard Medical School (1)
Chan Zuckerberg Biohub (1)
Deaprtment of Biological Sciences - Universtiy of Alberta (1)
Department of Biochemistry and Pharamcology Bio21 Institute, University of Melbourne (1)
Department of Biochemistry and Pharmacology Bio21 Institute, University of Melbourne (1)
Department of Biology, Stanford University (1)
Department of Cancer Research and Molecular Medicine Faculty of Medicine Laboratory Centre, 5th floor. Erling Skjalgssons gt. 1 Norwegian University of Science and Technology NTNU 7006 Trondheim, Norway Tel: +47 72573076; Fax: +47 72576400 Cell. phone: +47 91825455 (1)
Department of Cell Biology, Harvard Medical School (1)
Department of Cellular and Molecular Pharmacology Quantitative Biosciences Institute University of California San Francisco San Francisco, CA 94158, USA (1)
Department of Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94158, USA (1)
Department of Chemistry Michigan State University (1)
Department of Dermatology, Northwestern University, USA (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN 55905 (1)
Department of Medicinal Chemistry, University of Michigan (1)
Department of Veterinary Biosciences, Melbourne Veterinary School, The University of Melbourne, Parkville, Victoria 3010, Australia (1)
Director of Women’s Health Research Women’s Service Line Inova Health System Chief Scientific Officer Gynecologic Cancer Center of Excellence John P. Murtha Cancer Center Research Program Uniformed Services University of the Health Sciences (1)

IsPrivate

False (1)

Modification

15.994915 (1)
57.021464 (1)

Study type

Transcription profiling by array (53)
RNA-seq of coding RNA (10)
Comparative genomic hybridization by array (5)
ChIP-seq (5)
Methylation profiling by array (5)
Unknown experiment type (4)
RNA-seq of non coding RNA (3)
ATAC-seq (2)
Hi-C (2)
One-color microarray (1)
Proteomic profiling by mass spectrometer (1)
ChIP-chip by array (1)
Genotyping by array (1)
Antigen profiling (1)
Other (1)

Release Date

2025 (475)
2022 (473)
2023 (472)
2024 (466)
2021 (459)
2020 (299)
2018 (272)
2019 (270)
2017 (235)
2015 (198)
2016 (188)
2014 (175)
2013 (135)
2012 (106)
2011 (88)
2010 (66)
2026 (65)
2009 (53)
2008 (44)
2007 (39)
2006 (12)
2003 (11)
2004 (9)
2005 (8)
1999 (4)
2000 (2)
1998 (2)
1997 (2)
2002 (1)

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Analysis of sex-specific lipid metabolism of Plasmodium falciparum points to the importance of sphingomyelin for gametocytogenesis

Male and female Plasmodium falciparum gametocytes are the parasite lifecycle stage responsible for transmission of malaria from the human host to the mosquito vector. Not only are gametocytes able to survive in radically different host environments, but they are also precursors for male and female g...

2022-04-05 | MTBLS4137 | MetaboLights

Comparative genomic hybridization of pre- and post-mouse H. pylori strains SS1 and SS2000

This experiment set contains the raw data for 8 arrays that were used in the genomic typing of the pre- and post-mouse H. pylori strains SS1 and SS2000. 10700 is the pre-mouse clinical isolate of SS1 and PMSS2000 is the pre-mouse clinical isolate of SS2000. gDNA from these strains were labeled and h...

ORGANISM(S): Helicobacter pylori

2005-11-03 | E-SMDB-1734 | biostudies-arrayexpress

Trastuzumab and Pertuzumab in Patients with Non-Breast/Gastroesophageal HER2-Amplified Tumors: Results from the NCI-MATCH ECOG-ACRIN Trial (EAY131) Subprotocol J.

Not available

S-EPMC10984755 | biostudies-literature

Regulation of mitochondrial metabolism in murine skeletal muscle by the medium-chain fatty acid receptor Gpr84.

Not available

S-EPMC9292139 | biostudies-literature

Transcription profiling of adult mouse heart following activation of Ras, MKK3 and MKK7 mutant genes

Three major MAP kinase signaling cascades, ERK, p38 and JNK, play significant roles in the development of cardiac hypertrophy and heart failure in response to external stress and neural/hormonal stimuli. In order to study the specific function of each MAP kinase branch in adult heart, we have gener...

ORGANISM(S): Mus musculus

2007-10-12 | E-GEOD-3530 | biostudies-arrayexpress

Text2Breathe: Text-Message Intervention for Parent Communication and Pediatric Asthma.

Not available

S-EPMC10650351 | biostudies-literature

Differential role of pannexin-1/ATP/P2X₇ axis in IL-1β release by human monocytes.

Not available

S-EPMC5507675 | biostudies-literature

DNAJB6 chaperones PP2A mediated dephosphorylation of GSK3β to downregulate β-catenin transcription target, osteopontin.

Not available

S-EPMC3717376 | biostudies-literature

Lewy Body-like Pathology and Loss of Dopaminergic Neurons in Midbrain Organoids Derived from Familial Parkinson's Disease Patient.