Mobility shift - OmicsDI

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Unknown (3180)
Transcriptomics (240)
Genomics (164)
Proteomics (120)
Other (9)
Metabolomics (4)
Models (2)
Multiomics (1)

Organisms

Homo sapiens (60)
Mus musculus (38)
Arabidopsis thaliana (10)
Pseudomonas aeruginosa (10)
Rattus norvegicus (8)
Escherichia coli (6)
Streptococcus pneumoniae D39 (6)
Streptococcus mutans (6)
Corynebacterium glutamicum (5)
Pseudomonas aeruginosa PAO1 (5)
Xylella fastidiosa (4)
Campylobacter jejuni (4)
Bacillus subtilis (4)
Streptomyces griseus (3)
Saccharomyces cerevisiae (3)
Bifidobacterium breve UCC2003 (3)
Streptococcus mutans UA159 (3)
Neurospora crassa (3)
Helicobacter pylori (2)
Mycobacterium tuberculosis (2)
Mycobacterium tuberculosis H37Rv (2)
Pantoea stewartii (2)
Pseudomonas syringae (2)
Rhodopseudomonas palustris (2)
Solanum pimpinellifolium (2)
Streptococcus pneumoniae TIGR4 (2)
Clostridium botulinum A str. ATCC 3502 (2)
Acinetobacter baumannii ATCC 17978 (1)
Campylobacter jejuni subsp. jejuni 81116 (1)
Streptomyces griseus subsp. griseus NBRC 13350 (1)

Organisms

Homo sapiens (24)
Mus musculus (9)
Thermothelomyces thermophilus ATCC 42464 (4)
Streptococcus mutans (4)
Corynebacterium glutamicum R (3)
Pseudomonas aeruginosa PAO1 (3)
Oryza sativa (3)
Pseudomonas aeruginosa (3)
Arabidopsis thaliana (3)
Yersinia pestis (2)
Actinobacillus pleuropneumoniae (2)
Corynebacterium diphtheriae (2)
Xylella fastidiosa (2)
Clostridioides difficile (2)
Campylobacter jejuni (2)
Corynebacterium glutamicum ATCC 13032 (2)
Bacillus subtilis (2)
Escherichia coli (2)
Rattus norvegicus (2)
Clostridium botulinum A str. ATCC 3502 (1)
Lactococcus lactis subsp. lactis Il1403 (1)
antimony-reducing enrichment culture (1)
Francisella hispaniensis (1)
Streptococcus pneumoniae D39 (1)
Parasynechococcus marenigrum WH 8102 (1)
Bradyrhizobium diazoefficiens USDA 110 (1)
Pseudomonas savastanoi pv. phaseolicola (1)
Brucella melitensis M5-90 (1)
Staphylococcus epidermidis RP62A (1)
Porphyromonas gingivalis ATCC 33277 (1)

Repository

biostudies-arrayexpress (167)
ENA (137)
geo (109)
pride (109)
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Tissue

Cell culture (16)
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B cell (2)
Vasculature (1)
Paneth cell of epithelium of small intestine (1)
Central nervous system (1)
T-24 cell (1)
Urinary bladder carcinoma cell line (1)
Alveolar macrophage (1)
Alveolar epithelial cell line (1)
Lung adenocarcinoma cell line (1)
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Epiblast (1)
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Eukaryotic cell (1)
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Xylem (1)

Disease

Disease free (3)
Acute leukemia (3)
Human immunodeficiency virus infectious disease (2)
COVID-19 (2)
Not applicable (1)
Angiogenic chondrosarcoma (1)
Not Available (1)
Nemaline myopathy (1)
Primary bacterial infectious disease (1)
Von Willebrand's disease 2 (1)
Von Willebrand's disease 1 (1)
Bacterial infectious disease (1)
Duchenne muscular dystrophy (1)
Brain glioblastoma multiforme (1)
Huntington Disease (1)
Cervix carcinoma (1)
Atherosclerosis (1)
Alzheimer's disease (1)
Tuberculosis (1)
Breast cancer (1)
Colon cancer (1)

Technology Type

Mass Spectrometry (109)
Bottom-up proteomics (39)
Shotgun proteomics (28)
Data-dependent acquisition (20)
Data-independent acquisition (18)
Affinity purification coupled with mass spectrometry proteomics (11)
Top-down proteomics (8)
DiaPASEF (7)
HDMSE (6)
Chemical cross-linking coupled with mass spectrometry proteomics (6)
Mass spectrometry (4)
Gel-based experiment (3)
Affinity proteomics (2)
MSE (2)
All-ion fragmentation (2)
SWATH MS (2)
Glycoproteomics (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (2)
Biotech Photometer (1)
BAS-1800 [FUJIFILM] (1)
G2565AA DNA microarray scanner [Agilent] (1)
Illumina MiSeq (1)
Illumina NovaSeq 6000 (1)
NextSeq 500 (1)
Instrument (1)
Thermo Scientific-Vanquish UHPLC system (1)
Thermo Scientific Q Exactive Orbitrap mass spectrometer (1)
TSQ Quantiva (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)

Publication Date

2025 (51)
2026 (37)
2014 (31)
2010 (31)
2015 (29)
2013 (29)
2012 (29)
2024 (24)
2008 (19)
2023 (17)
2011 (17)
2007 (15)
2016 (13)
2022 (12)
2009 (11)
2020 (9)
2021 (7)
2018 (6)
2019 (4)
2017 (3)
2006 (3)
2005 (1)

CHEBI ID

CHEBI:22194 (1)
CHEBI:67040 (1)
CHEBI:173071 (1)
CHEBI:173070 (1)
CHEBI:173069 (1)
CHEBI:173068 (1)
CHEBI:173067 (1)
CHEBI:173066 (1)
CHEBI:173065 (1)
CHEBI:172964 (1)
CHEBI:172963 (1)
CHEBI:173064 (1)
CHEBI:173063 (1)
CHEBI:173062 (1)
CHEBI:173061 (1)
CHEBI:173060 (1)
CHEBI:173058 (1)
CHEBI:173057 (1)
CHEBI:173056 (1)
CHEBI:173055 (1)
CHEBI:173054 (1)
CHEBI:4591 (1)
CHEBI:16229 (1)
CHEBI:36728 (1)
CHEBI:173053 (1)
CHEBI:157749 (1)
CHEBI:157753 (1)
CHEBI:173052 (1)
CHEBI:135283 (1)
CHEBI:541975 (1)

Metabolite Name

Sedoheptulose_7-phosphate (1)
Pipecolic_acid (1)
Kynurenic_acid (1)
Itaconic_acid (1)
Isoleucine_13C6-15N (1)
Glycerol_3-phosphate (1)
Glucose_6-phosphate (1)
Fructose_1,6-bisphosphate (1)
Carbamoyl_aspartate (1)
C5_carnitine (1)
Butyryl_carnitine (1)
Alpha-lipoic_acid (1)
S-adenosylhomocysteine (1)
Glyceraldehyde_3-phosphate (1)
Erythrose_4-phosphate (1)
Pantothenic_acid (1)
Nicotinic_acid (1)
Folate (1)
Glycerophosphocholine (1)
S-adenosylmethionine (1)
Campesta-5,7-dien-3beta-ol (1)
(5Z,7E)-(3S)-25-fluoro-9,10-seco-5,7,10(19)-cholestatrien-3-ol (1)
(5E,7E,10E)-(3S)-19-methyl-9,10-seco-5,7,10(19)-cholestatrien-3-ol (1)
(5Z,7E,10E)-(3S)-19-methyl-9,10-seco-5,7,10(19)-cholestatrien-3-ol (1)
(7E)-(3S,6S)-6-hydroperoxy-9,10-seco-4,7,10(19)-cholestatrien-3-ol (1)
(7E)-(3S,6R)-6-hydroperoxy-9,10-seco-4,7,10(19)-cholestatrien-3-ol (1)
(3S,6R,9R)-9(10-6)abeo-5(10),7-cholestadien-3-ol (1)
(5Z,7E)-(3S)-22-fluoro-9,10-seco-5,7,10(19)-cholestatrien-3-ol (1)
(5E,7E)-(3S)-6-fluoro-9,10-seco-5,7,10(19)-cholestatrien-3-ol (1)
(5Z,7E)-(3S)-23,23-difluoro-9,10-seco-5,7,10(19)-cholestatriene-3,25-diol (1)

First Public Date

2014 (41)
2026 (16)
2025 (15)
2024 (14)
2015 (11)
2022 (6)
2020 (6)
2019 (6)
2023 (5)
2018 (5)
2017 (5)
2021 (3)
2016 (3)
2013 (1)

Classification

bacteria (32)
protozoa (1)

Study type

Transcription profiling by array (124)
ChIP-seq (17)
RNA-seq of coding RNA (6)
Unknown experiment type (5)
ChIP-chip by array (4)
Other (3)
ChIP-chip by tiling array (2)
One-color microarray (1)
Comparative genomic hybridization by array (1)
ATAC-seq (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (223)
2025 (210)
2019 (192)
2021 (186)
2016 (185)
2020 (175)
2023 (172)
2012 (169)
2017 (167)
2015 (158)
2014 (158)
2018 (156)
2013 (152)
2024 (146)
2009 (144)
2011 (139)
2010 (138)
2008 (107)
2007 (72)
2006 (53)
2005 (48)
2004 (27)
2003 (26)
2001 (26)
2026 (25)
2000 (25)
2002 (21)
1998 (19)
1999 (18)
1997 (4)

Lab affiliation

Center for Structural Biology, Center for Cancer Research, National Cancer Institute (NCI), National Institutes of Health, Frederick, MD 21702-1201, USA (3)
Laboratory of mass spectrometry, Sanquin Research, Amsterdam, NL (2)
Colorado State University (2)
Université Paris Cité, CNRS, Institut Jacques Monod, F-75013 Paris, France (2)
ProGenTomics, Laboratory of Pharmaceutical Biotechnology,Ghent University (2)
Institut Cochin, Inserm U 1016, CNRS UMR 8104, Université Paris Cité. (2)
Department of Genome Sciences, University of Washington, Seattle, WA 98195 USA (2)
Principal Investigator | The Ernst and Kaethe Ascher Career Development Chair | The Department of Immunology and Regenerative Biology | Weizmann-UK Building, Room 17 | Weizmann Institute of Science | Rehovot 76100, ISRAEL | Tel: +972-8-934-4937 (1)
State Key Laboratory of Virology and Hubei Province Key Laboratory of Allergy and Immunology, Institute of Medical Virology, TaiKang Center for Life and Medical Sciences, TaiKang Medical School, Wuhan University (1)
Inserm UMRS 1256 N-GERE (Nutrition-Genetics-Environmental Risks) (1)
Division of Physiological Genomics, Biomedical Center, Ludwig-Maximilians-Universität, Planegg-Martinsried, Germany. Institute of Stem Cell Research, Helmholtz Center Munich, Planegg-Martinsried, Germany. (1)
Discovery Proteomics Facility, Target Discovery Institute,University of Oxford (1)
Agence Nationale de Sécurité Sanitaire (anses) ANSES – Laboratoire de Fougères Unité Toxicologie des contaminants Plateforme PROMETHEE 10 B rue Claude Bourgelat – Javené - CS 40608 35306 FOUGERES Cedex +33 (0)2 56 65 00 68 (1)
Sun Yat-sen Memorial Hospital,Sun Yat-sen University 107 Yanjiang West Road Guangzhou 510120, P. R. China (1)
Department of Life Sciences, Chalmers University of Technology, 412 96, Gothenburg, Sweden (1)
Division of Genomics and RNomics, Biocenter, Medical University of Innsbruck, 6020 Innsbruck, Austria. (1)
Novo Nordisk Foundation Center for Basic Metabolic Research University of Copenhagen, Denmark (1)
Chief, Division of Immunology, Boston Children’s Hospital Professor of Pediatrics and Medicine (1)
Department of Molecular Hematology, Sanquin Research, Amsterdam (1)
UC-Berkeley (1)
Mass Spectrometry Facility, Max Perutz Labs, University of Vienna, Vienna BioCenter, Dr. Bohr-Gasse 9, 1030 Vienna, Austria (1)
Department of Anatomy and Neurobiology, School of Medicine, Virginia Commonwealth University, Richmond, VA USA (1)
Departments of Pharmacology and Biochemistry and the Sandra and Edward Meyer Cancer Center at Weill Cornell Medicine (1)
Center for Structural Biology, Center for Cancer Research, National Cancer Institute (NCI), National Institutes of Health, Frederick, MD 21702-1201, USA. (1)
Université Paris cité, CNRS, Institut Jacques Monod, F-75006 Paris, France (1)
Centre de Recherche de Biologie cellulaire de Montpellier(CRBM), CNRS UMR 5237, Université de Montpellier, 1919 Route de Mende, 34293 Montpellier cedex 5, France (1)
Paris Brain Institute – ICM, Sorbonne Université, Inserm, CNRS, AP-HP, Hôpital Pitié-Salpêtrière, Paris, France (1)
Université de Nantes, INSERM, CNRS, CRCI2NA, F-44000 Nantes, France (1)
1 Ecole Pratique des Hautes Etudes, EPHE, Université Paris Sciences et Lettres, Paris, France, 2 Nantes Université, CNRS, INSERM, l'Institut du Thorax, F-44000 Nantes, France, 3 Laboratoire d’Excellence GR-Ex, Paris, France, 75010 (1)
Peter A. Nigrovic, MD Chief, Division of Immunology, Boston Children’s Hospital Professor of Pediatrics and Medicine (1)

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Ion mobility-based sterolomics reveals spatially and temporally distinctive sterol lipids in the mouse brain

Aberrant sterol lipid metabolism is associated with physiological dysfunctions in the aging brain and aging-dependent disorders such as neurodegenerative diseases. There is an unmet demand to comprehensively profile sterol lipids spatially and temporally in different brain regions during aging. Here...

2021-05-24 | MTBLS2457 | MetaboLights

WT vs gntR1 mutant gene expression profiles

The transcriptional regulator GntR1 downregulates the genes for gluconate catabolism and pentose phosphate pathway in Corynebacterium glutamicum. Gluconate lowers the DNA binding affinity of GntR1, which is probably the mechanism of gluconate-dependent induction of these genes. In addition, GntR1 po...

ORGANISM(S): Corynebacterium glutamicum

2014-07-15 | E-GEOD-58631 | biostudies-arrayexpress

Molecular mechanisms of two-component system RhpRS regulating type III secretion system in Pseudomonas syringae

Pseudomonas syringae uses two-component system RhpRS to regulate the expression of type III secretion system (T3SS) genes and bacterial virulence. However, the molecular mechanism and the regulons of RhpRS have yet to be fully elucidated. Here we show that RhpS functions as an autokinase, an RhpR ki...

ORGANISM(S): Pseudomonas syringae pv. phaseolicola

2014-10-01 | E-GEOD-58533 | biostudies-arrayexpress

Regulatory role of SrrAB two-component system in Staphylococcus epidermidis growth and biofilm formation

Biofilm formation is considered the most important factor involved in pathogenicity of Staphylococcus epidermidis.We investigated the role of two-component signal transduction system (TCS) srrAB, which was up-regulated under micro-aerobic condition, in the growth and biofilm formation of S. epidermi...

ORGANISM(S): Staphylococcus epidermidis

2014-11-21 | E-GEOD-47101 | biostudies-arrayexpress

Chip-chip analysis of C. glutamicum GntR1

The transcriptional regulator GntR1 downregultates the genes for gluconate catabolism and pentose phosphate pathway in Corynebacterium glutamicum. Gluconate lowers the DNA binding affinity of GntR1, which is probably the mechanism of gluconate-dependent induction of these genes. In addition, GntR1 p...

ORGANISM(S): Corynebacterium glutamicum

2014-07-15 | E-GEOD-58632 | biostudies-arrayexpress

Spatial and temporal heterogeneity in human mobility patterns in Holocene Southwest Asia

PRJEB51705 | ENA

Direct visualization of electrophoretic mobility shift assays using nanoparticle-aptamer conjugates.

Not available

S-EPMC3307786 | biostudies-literature

QseA regulation of virulence factors in EHEC

Enterohemorrhagic E. coli (EHEC) colonizes the large intestine and causes attaching and effacing lesions (AE). Most of the genes involved in the formation of AE lesions are encoded within a chromosomal pathogenicity island termed the Locus of Enterocyte Effacement (LEE). The LysR-like transcriptiona...

ORGANISM(S): Escherichia coli

2010-09-07 | E-GEOD-18118 | biostudies-arrayexpress

pH modification of gel mobility shift improves polyplex selection In Vivo.

Not available

S-EPMC11568931 | biostudies-literature

Microfluidic Mobility Shift Profiling of Lysine Acetyltransferases Enables Screening and Mechanistic Analysis of Cellular Acetylation Inhibitors.

Not available

S-EPMC6320249 | biostudies-literature

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