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ProteomicsmultiFLEX-LF: A Computational Approach to Quantify the Modification Stoichiometries in Label-free Proteomics Datasets
In high-throughput LC-MS/MS-based proteomics, information about the presence and stoichiometry of post-translational modifications is normally not readily available. To overcome this problem we developed multiFLEX-LF, a computational tool that builds upon FLEXIQuant and FLEXIQuant-LF, which detect m...
ORGANISM(S): Homo sapiens (Human) 
2022-02-11 | PXD027970 | Pride
Dia Post-translational modifications Ptm stochiometry Cell cycle Lc-msms Quantification 
ProteomicsFLEXIQuant-LF: Robust Regression to quantify protein modification extent in label-free proteomics data
Improvements in LC-MS/MS methods and technology have enabled the identification of thousands of modified peptides in a single experiment. However, protein regulation by post-translational modifications (PTMs) is not binary, making methods to quantify the modification extent crucial to fully understa...
ORGANISM(S): Homo sapiens (Human) 
2020-12-04 | PXD018411 | Pride
Dia Mass spectrometry Modification stochiometry Peptide modification Software Ptm quantification Ptm identification Open source Label-free quantification Dda 
ProteomicsProteomic analysis of the soluble proteome of Thermochaetoides thermophila
The soluble proteome of Thermochaetoides thermophila (T. thermophilia) was analyzed to identify possible interaction of coeluting complexes for downstream integrative analysis using Co-fractionation/mass spectrometry (CF/MS). Mycelium of T. thermophilia was lysed and separated via size exclusion chr...
ORGANISM(S): Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) 
2024-08-02 | PXD048355 | Pride
Proteomics Lc-msms 
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