Moore B B - OmicsDI

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Unknown (5043)
Transcriptomics (218)
Proteomics (125)
Genomics (73)
Metabolomics (41)
Models (6)
Genomic (3)
Multiomics (1)

Organisms

Homo sapiens (209)
Mus musculus (70)
Arabidopsis thaliana (13)
Eohaustorius estuarius (11)
Drosophila melanogaster (9)
Prochlorococcus marinus subsp. pastoris str. CCMP1986 (4)
Pseudomonas aeruginosa (4)
Saccharomyces cerevisiae (4)
Rattus norvegicus (4)
Danio rerio (3)
Streptomyces coelicolor (2)
Aspergillus fumigatus (2)
Apis mellifera (2)
Caenorhabditis elegans (2)
Triticum aestivum (2)
Gallus gallus (2)
Oryza sativa (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Colletotrichum higginsianum (1)
Capra hircus (1)
Salmonella enterica (1)
Prochlorococcus marinus (1)
Rana temporaria (1)
Xenopus laevis (1)
Xylella fastidiosa (1)
Citrus sinensis (1)
Schizosaccharomyces pombe (1)
Helicobacter pylori (1)
Anopheles gambiae (1)
Bos taurus (1)

Organisms

Homo sapiens (3)
Bacillus infantis NRRL B-14911 (1)
Prochlorococcus marinus str. MIT 9303 (1)
Prochlorococcus marinus str. MIT 9211 (1)
Bacillus sp. NRRL B-14911 (1)
Prochlorococcus marinus str. MIT 9301 (1)
Prochlorococcus marinus str. NATL1A (1)
Luminiphilus syltensis NOR5-1B (1)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (226)
pride (89)
EGA (53)
MetaboLights (35)
MassIVE (27)
ENA (12)
GNPS (6)
BioModels (5)
jPOST (4)
dbGaP (3)
PanoramaPublic (3)
PeptideAtlas (2)
Cell Collective (1)

Tissue

Cell culture (17)
Brain (6)
Blood plasma (4)
Liver (4)
Fibroblast (3)
Heart (3)
Larva (3)
Leaf (3)
Photosynthetic cell (3)
Stromal cell (3)
Blood cell (2)
Blood platelet (2)
Embryonic stem cell (2)
Lung (2)
Macrophage (2)
Platelet (2)
Skeletal muscle (2)
Female Reproductive System (1)
Ovary (1)
B cell (1)
Blood (1)
Bone marrow (1)
Cell suspension culture (1)
Cerebrospinal fluid (1)
Cornea (1)
Embryo (1)
Epithelial cell (1)
Epithelial cell of lung (1)
Fetal cardiomyocyte (1)
Flower (1)

Disease

Acute myeloid leukemia (6)
Chronic lymphocytic leukemia (4)
Mitochondrial metabolism disease (3)
Pulmonary arterial hypertension (1)
Extra-adrenal sympathetic paraganglioma (1)
Alpha-1 antitrypsin deficiency-related emphysema (1)
Not applicable (1)
Colorectal cancer (1)
Coronary artery disease (1)
Normal (1)
High Grade Ovarian Serous Adenocarcinoma (1)
Acute leukemia (1)
Alzheimer's disease (1)
Amyotrophic lateral sclerosis (1)
Breast cancer (1)
Disease free (1)
Head and neck squamous cell carcinoma (1)
Hepatitis (1)
Human cytomegalovirus infection (1)
Hypertrophic cardiomyopathy (1)
Inherited metabolic disorder (1)
Malignant neoplasm of ovary (1)
Melanoma (1)
Non-small cell lung carcinoma (1)
Substance abuse (1)
Systemic mastocytosis (1)

Technology Type

Mass Spectrometry (89)
Shotgun proteomics (47)
Mass spectrometry (29)
Bottom-up proteomics (24)
Data-dependent acquisition (16)
Gel-based experiment (10)
Affinity purification coupled with mass spectrometry proteomics (6)
Mass spectrometry assay (5)
Illumina Genome Analyzer II (2)
Illumina HiSeq 2000 (2)
HDMSE (2)
Top-down proteomics (2)
Illumina Genome Analyzer, Illumina HiSeq 2000, Illumina MiSeq, Affymetrix_U133plus2- (1)
Illumina HiSeq 2000, Illumina HiSeq 2500, ILLUMINA (1)
Illumina HiSeq 2000, Illumina Infinium HumanMethylation450 BeadChip, Affymetrix expression array, ILLUMINA (1)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Illumina HiSeq 2500, Illumina MiSeq (1)
NMR spectroscopy (1)
Affinity proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
SRM/MRM (1)
SWATH MS (1)

Instrument Platform

Orbitrap Fusion Lumos (10)
LTQ Orbitrap Velos (7)
Q Exactive (6)
IScan (3)
Q Exactive Plus (3)
ArrayWoRx Biochip Reader [Applied Precision] (2)
Illumina HiSeq 2500 (2)
Illumina HiSeq 2000 (2)
6520A Quadrupole Time-of-Flight LC/MS (2)
6530A Q-TOF LC/MS (2)
LTQ Orbitrap Elite (2)
LTQ Orbitrap XL (2)
Orbitrap Eclipse (2)
Orbitrap Fusion (2)
Q Exactive HF-X (2)
DNA Microarray Scanner BA [Agilent Technologies] (1)
GenePix 4000B [Axon Instruments] (1)
Affymetrix Fluidics Station 400 (1)
Illumina NovaSeq X (1)
Illumina MiSeq (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 3000 (1)
6530 Q-TOF LC/MS (Agilent) (1)
LTQ FT (1)
MaXis (1)
TSQ Quantum Ultra (1)
LTQ (1)
LTQ Orbitrap (1)
LTQ Velos (1)
LTQ XL ETD (1)

Publication Date

2015 (40)
2023 (30)
2013 (29)
2014 (28)
2012 (28)
2010 (25)
2022 (21)
2016 (20)
2021 (19)
2024 (17)
2008 (17)
2019 (16)
2025 (16)
2011 (15)
2026 (13)
2018 (13)
2009 (11)
2020 (10)
2007 (9)
2017 (8)
2006 (5)
2005 (2)
2002 (1)

UNIPROT ID/AC

A0A024R563 (2)
A0A024R8H9 (2)
A0A024RAN2 (2)
A0A024RC46 (2)
A0A087WT59 (2)
A0A087WTX5 (2)
A0A087WVW2 (2)
A0A087WWK8 (2)
A0A087WYL9 (2)
A0A087WZE9 (2)
A0A087X130 (2)
A0A087X1V9 (2)
A0A087X232 (2)
A0A0A0MR66 (2)
A0A0A0MS07 (2)
A0A0A0MS51 (2)
A0A0A0MSA7 (2)
A0A0C4DG89 (2)
A0A0C4DGT3 (2)
A0AVT1 (2)
A0FGR8 (2)
A0FGR8-2 (2)
A0FGR8-6 (2)
A0JLT2 (2)
A0JNW5 (2)
A0M8Q6 (2)
A0MZ66 (2)
A0N5G5 (2)
A1IGU5 (2)
Q0GK43 (1)

ENSEMBL ID

ENSG00000147251 (2)
ENSG00000204131 (2)
ENSG00000229353 (2)
ENSG00000247315 (2)
ENSG00000170477 (1)

CHEBI ID

CHEBI:15891 (10)
CHEBI:28044 (10)
CHEBI:30915 (10)
CHEBI:15354 (9)
CHEBI:16335 (9)
CHEBI:16704 (9)
CHEBI:17750 (9)
CHEBI:30769 (9)
CHEBI:16235 (8)
CHEBI:16750 (8)
CHEBI:16811 (8)
CHEBI:16919 (8)
CHEBI:17015 (8)
CHEBI:17154 (8)
CHEBI:17368 (8)
CHEBI:17596 (8)
CHEBI:18012 (8)
CHEBI:18186 (8)
CHEBI:18257 (8)
CHEBI:25017 (8)
CHEBI:27897 (8)
CHEBI:29016 (8)
CHEBI:15428 (7)
CHEBI:15741 (7)
CHEBI:16010 (7)
CHEBI:16359 (7)
CHEBI:16411 (7)
CHEBI:16610 (7)
CHEBI:16708 (7)
CHEBI:28748 (1)

Metabolite Name

Isoleucine (9)
Leucine (9)
Phenylalanine (9)
Serine (9)
Tyrosine (9)
Guanosine (8)
Proline (8)
Tryptophan (8)
Adenine (7)
Adenosine (7)
Arginine (7)
Glutamine (7)
Lysine (7)
Methionine (7)
Ornithine (7)
Valine (7)
Xanthine (7)
2'-deoxycytidine (6)
Cholesterol (6)
Choline (6)
Citrulline (6)
Cysteine (6)
Glycine (6)
Kynurenine (6)
Putrescine (6)
Spermidine (6)
Succinate (6)
Taurine (6)
Uracil (6)
5-oxoproline (5)

First Public Date

2013 (7)
2019 (2)
2023 (1)
2021 (1)
2017 (1)

Modelling Approach

Constraint-based model (4)
Ordinary differential equation model (1)

Lab affiliation

University of Warwick (7)
Department of Clinical Microbiology, Sahlgrenska University Hospital, Gothenburg, Sweden (3)
Department of Medical Biochemistry and Biophysics, Karolinska Institute, Sweden (2)
Division of Internal Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX (2)
Karolinska Institutet (2)
School of Biological and Behavioural Sciences Queen Mary University of London (2)
- University of Cambridge, Department of Genetics, Downing Street, Cambridge CB2 3EH, UK - Division of Biology and Biological Engineering, California Institute of Technology, 1200 E. California Blvd, Pasadena, California 91125, USA (1)
1 Cambridge Systems Biology Centre, University of Cambridge, Cambridge, UK 2 Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, Cambridge, UK 3 Department of Biochemistry, University of Cambridge, Cambridge, UK (1)
Assistant Professor & K12 Scholar Translational Glycobiology Institute, Department of Translational Medicine Florida International University | Herbert Wertheim College of Medicine (1)
Assistant Professor Department of Cellular and Molecular Medicine Florida International University | Herbert Wertheim College of Medicine (1)
Associate Professor; Director of the Molecular and Applied Sciences Laboratory and Applied Physiology Laboratory (1)
Bavarian Center for Biomolecular Mass Spectrometry Technische Universität München Gregor-Mendel-Straße 4 85354 Freising DEUTSCHLAND / GERMANY (1)
Bavarian Center for Biomolecular Mass Spectrometry at Klinikum rechts der Isar Technical University of Munich (1)
BioMediTech & Tampere University Hospital, Faculty of Medicine and Health Technology, Tampere University, Arvo Ylpön katu 34 (ARVO), FI-33520 Tampere, Finland (1)
Biochemistry and Molecular Biology, Munger Lab, University of Rochester, USA (1)
Biosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, United Kingdom (1)
Boston Childrens Hospital Harvard Medical School (1)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (1)
Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada. (1)
Center FOr Cancer Research Development, Proteomics Core Facility, Rhode Island Hospital, Providence, RI, USA (1)
Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography and University of California San Diego, 9500 Gilman Dr #0204, La Jolla, CA 92093, USA (1)
Center for Network Systems Biology, Department of Biochemistry, Boston University School of Medicine, Boston, MA, USA (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich, Bavaria, Germany (1)
Department of Biochemistry and Molecular Biology Charbonneau Research Institute Cummings School of Medicine University of Calgary (1)
Department of Biochemistry, Microbiology and Immunology, University of Ottawa; University of Ottawa Heart Institute (1)
Department of Biochemistry, The University of Western Ontario, London, Ontario, Canada. Department of Chemistry, The University of Western Ontario, London, Ontario, Canada. (1)
Department of Biochemistry, The University of Western Ontario, London, Ontario, Canada. 2 Bioinformatic Solutions Inc., Waterloo, Ontario, Canada. Department of Chemistry, The University of Western Ontario, London, Ontario, Canada. (1)
Department of Biosciences, University of Milan, Via Celoria 26, 20133, Milan (Italy) (1)
Department of Cellular and Molecular Pharmacology, School of Medicine, University of California San Francisco, USA (1)
Department of Clinical Microbiology, Sahlgrenska University Hospital, SE-41346 Gothenburg, Sweden (1)

IsPrivate

False (5)

Submitter Keywords

FROG (4)
Immuno-oncology (1)

Modification

Not available (2)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (151)
RNA-seq of coding RNA (23)
Other (8)
Comparative genomic hybridization by array (7)
ChIP-seq (7)
Methylation profiling by array (7)
MicroRNA profiling by array (6)
Unknown experiment type (4)
RNA-seq of non coding RNA (3)
Genotyping by array (2)
Transcription profiling by RT-PCR (2)
RNA-seq of coding RNA from single cells (2)
Cell line - Methylation microarray (1)
ChIP-chip by tiling array (1)
RNAi profiling by array (1)
DNA-seq (1)

Release Date

2022 (556)
2021 (512)
2023 (495)
2024 (442)
2025 (435)
2020 (390)
2019 (337)
2018 (324)
2017 (273)
2016 (264)
2015 (245)
2014 (202)
2013 (171)
2012 (127)
2011 (110)
2010 (89)
2026 (82)
2009 (62)
2008 (55)
2007 (26)
2006 (16)
2005 (13)
2003 (9)
2004 (7)
2001 (6)
2002 (5)
1999 (5)
2000 (4)
1997 (4)
1998 (3)

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Diffuse large B-cell lymphoma

Diffuse large B-cell lymphoma (DLBCL), the most common subtype of non-Hodgkin's lymphoma, is clinically heterogeneous: 40% of patients respond well to current therapy and have prolonged survival, whereas the remainder succumb to the disease. We proposed that this variability in natural history refle...

ORGANISM(S): Homo sapiens

2002-06-27 | E-GEOD-60 | biostudies-arrayexpress

Bacillus infantis NRRL B-14911

Bacillus infantis NRRL B-14911 Genome sequencing

PRJNA212797 | ENA

Transcription profiling of diffuse large B-cell lymphoma identifying different subtypes

ORGANISM(S): Homo sapiens

2005-06-28 | E-SMDB-183 | biostudies-arrayexpress

B lymphoma from TRAF3-deficient mice

Spleen samples with B lymphoma from TRAF3 knockout mice compared with littermate controls 3 lymphoma samples, 4 control samples

ORGANISM(S): Mus musculus

2014-09-11 | E-GEOD-48818 | biostudies-arrayexpress

Global hepatitis B and D community advisory board: expectations, challenges, and lessons learned.

Not available

S-EPMC11381374 | biostudies-literature

Bacillus sp. NRRL B-14911

Marine strain that produces unusual pigments.

PRJNA13545 | ENA

Characterization of Chitin Synthase B Gene (HvChsb) and the Effects on Feeding Behavior in Heortia vitessoides Moore.

Not available

S-EPMC10380562 | biostudies-literature

Role of Humoral Immunity against Hepatitis B Virus Core Antigen in the Pathogenesis of Acute Liver Failure

To investigate the role of viral and host factors in acute liver failure, we analyzed serum and multiple liver specimens obtained at the time of liver transplantation from four well-characterized patients. We carried out an integrated clinicopathological analysis, gene and microRNA expression profil...

ORGANISM(S): Homo sapiens

2018-10-29 | E-GEOD-96851 | biostudies-arrayexpress

Transcription profiling of human peripheral blood mononuclear (PBMC) cells in pulmonary arterial hypertension

Microarray analysis of peripheral blood mononuclear (PBMC) cells in pulmonary arterial hypertension.

ORGANISM(S): Homo sapiens

2007-09-21 | E-GEOD-703 | biostudies-arrayexpress

The complete mitochondria genome sequence of Heortia vitessoides Moore.

Not available

S-EPMC7707790 | biostudies-literature

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