Moore E E - OmicsDI

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Unknown (5324)
Transcriptomics (152)
Proteomics (82)
Genomics (75)
Metabolomics (37)
Models (3)
Genomic (1)
Multiomics (1)

Organisms

Homo sapiens (156)
Mus musculus (53)
Arabidopsis thaliana (11)
Saccharomyces cerevisiae (11)
Drosophila melanogaster (8)
Escherichia coli (7)
Rattus norvegicus (4)
Prochlorococcus marinus subsp. pastoris str. CCMP1986 (3)
Bacteria (3)
Streptomyces coelicolor (2)
Caenorhabditis elegans (2)
Triticum aestivum (2)
Gallus gallus (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Staphylococcus aureus (2)
Colletotrichum higginsianum (1)
Salmonella enterica (1)
Rana temporaria (1)
Xenopus laevis (1)
Schizosaccharomyces pombe (1)
Helicobacter pylori (1)
Bos taurus (1)
Dysidea granulosa (1)
Lamellodysidea herbacea (1)
Camelina sativa (1)
Campylobacter hepaticus (1)
Candida albicans (1)
Haemophilus influenzae (1)
Haloferax volcanii (1)
Klebsiella pneumoniae (1)

Organisms

Homo sapiens (4)
Sagittula stellata E-37 (1)
Saccharum hybrid cultivar Q117 (1)
Octadecabacter antarcticus 307 (1)
Sulfurimonas gotlandica GD1 (1)
Porphyromonas gingivalis (1)
Medicago truncatula (1)

Repository

biostudies-arrayexpress (160)
EGA (56)
pride (54)
MetaboLights (32)
MassIVE (24)
ENA (10)
GNPS (5)
BioModels (3)
PanoramaPublic (2)
dbGaP (1)
geo (1)
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PAXDB (1)

Tissue

Cell culture (13)
Larva (4)
Liver (3)
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Epithelial cell (2)
Heart (2)
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Blood plasma (1)
Cornea (1)
Embryo (1)
Endothelial cell (1)
Feces (1)
Fibroblast (1)
Hepatocyte (1)
Keratocyte (1)
Lung (1)
Macrophage cell line (1)
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Placenta (1)
Plant cell (1)
Primary cell line cell (1)
Prostate gland (1)
Small intestine (1)
Spleen (1)
Stem cell (1)
Stromal cell (1)

Disease

Acute myeloid leukemia (6)
Chronic lymphocytic leukemia (2)
Extra-adrenal sympathetic paraganglioma (1)
Not applicable (1)
Colorectal cancer (1)
Coronary artery disease (1)
Cancer (1)
Corneal granular dystrophy (1)
Disease free (1)
Hepatitis (1)
Hepatocellular carcinoma (1)
Inherited metabolic disorder (1)
Lattice corneal dystrophy (1)
Mitochondrial metabolism disease (1)
Mixed disorder as reaction to stress (1)
Myocardial ischemia (1)

Technology Type

Mass Spectrometry (54)
Shotgun proteomics (33)
Mass spectrometry (27)
Bottom-up proteomics (13)
Data-dependent acquisition (7)
Mass spectrometry assay (3)
Illumina Genome Analyzer II (2)
Illumina HiSeq 2000 (2)
Illumina HiSeq 2500, Illumina HiSeq 2000 (2)
Affinity purification coupled with mass spectrometry proteomics (2)
HDMSE (2)
SWATH MS (2)
Top-down proteomics (2)
Illumina HiSeq 2000, Illumina HiSeq 2500, ILLUMINA (1)
Illumina HiSeq 2000, Illumina Infinium HumanMethylation450 BeadChip, Affymetrix expression array, ILLUMINA (1)
Illumina HiSeq 2000, Illumina MiSeq (1)
Illumina HiSeq 2500, Illumina MiSeq (1)
Illumina MiSeq, Illumina HiSeq 2500 (1)
NMR spectroscopy (1)
NMR spectroscopy assay (1)
Affinity proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)
DiaPASEF (1)
Gel-based experiment (1)
SRM/MRM (1)

Instrument Platform

Orbitrap Fusion (5)
Q Exactive (5)
LTQ Orbitrap Velos (4)
Orbitrap Fusion Lumos (4)
Q Exactive HF-X (3)
ArrayWoRx Biochip Reader [Applied Precision] (2)
Illumina NovaSeq 6000 (2)
Illumina HiSeq 4000 (2)
Agilent 6530 Accurate Mass Q-TOF (2)
LTQ Orbitrap Elite (2)
LTQ Orbitrap XL (2)
Orbitrap Eclipse (2)
Q Exactive Plus (2)
DNA Microarray Scanner BA [Agilent Technologies] (1)
GenePix 4000B [Axon Instruments] (1)
Scanning hardware (1)
Affymetrix Fluidics Station 400 (1)
Illumina NovaSeq X (1)
Illumina MiSeq (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 3000 (1)
6520A Quadrupole Time-of-Flight LC/MS (1)
6530 Quadrupole Time of Flight MS (Agilent Instrument) (1)
LTQ FT (1)
MaXis (1)
6140 Quadrupole LC/MS (1)
6530A Q-TOF LC/MS (1)
LTQ (1)
LTQ Orbitrap (1)

Publication Date

2015 (23)
2013 (22)
2012 (22)
2010 (20)
2021 (19)
2014 (19)
2008 (17)
2023 (17)
2022 (16)
2024 (15)
2016 (13)
2019 (12)
2018 (10)
2011 (10)
2025 (9)
2026 (8)
2007 (8)
2017 (6)
2009 (6)
2020 (6)
2006 (4)

UNIPROT ID/AC

160488.PP_0985 (1)
160488.PP_3365 (1)
ACCA_PSEPK (1)
ACCD_PSEPK (1)
ACP_PSEPK (1)
ACSA1_PSEPK (1)
ADE_PSEPK (1)
AGUA_PSEPK (1)
AK_PSEPK (1)
ALGB_PSEPK (1)
ALGC_PSEPK (1)
ALLA_PSEPK (1)
AMGK_PSEPK (1)
AMPA_PSEPK (1)
ANMK_PSEPK (1)
APAG_PSEPK (1)
APAH_PSEPK (1)
APEB_PSEPK (1)
APT_PSEPK (1)
ARCA_PSEPK (1)
ARGA_PSEPK (1)
ARGB_PSEPK (1)
ARGC1_PSEPK (1)
ARGD_PSEPK (1)
ARGJ_PSEPK (1)
ARLY_PSEPK (1)
AROB_PSEPK (1)
AROC_PSEPK (1)
AROK_PSEPK (1)
AROQ1_PSEPK (1)

CHEBI ID

CHEBI:30915 (9)
CHEBI:15891 (8)
CHEBI:17750 (8)
CHEBI:18012 (8)
CHEBI:30769 (8)
CHEBI:15354 (7)
CHEBI:16335 (7)
CHEBI:16359 (7)
CHEBI:16411 (7)
CHEBI:16704 (7)
CHEBI:17015 (7)
CHEBI:28044 (7)
CHEBI:15741 (6)
CHEBI:16235 (6)
CHEBI:16530 (6)
CHEBI:16750 (6)
CHEBI:16811 (6)
CHEBI:16856 (6)
CHEBI:16919 (6)
CHEBI:17148 (6)
CHEBI:17154 (6)
CHEBI:17368 (6)
CHEBI:17596 (6)
CHEBI:17687 (6)
CHEBI:18186 (6)
CHEBI:18257 (6)
CHEBI:27732 (6)
CHEBI:27897 (6)
CHEBI:28865 (6)
CHEBI:29016 (6)

Metabolite Name

Guanosine (7)
Phenylalanine (7)
Serine (7)
Tyrosine (7)
Adenosine (6)
Arginine (6)
Isoleucine (6)
Kynurenine (6)
Leucine (6)
Proline (6)
Tryptophan (6)
Xanthine (6)
Adenine (5)
Caffeine (5)
Choline (5)
Citrulline (5)
Cysteine (5)
Glutamine (5)
Lysine (5)
Methionine (5)
Ornithine (5)
Spermidine (5)
Succinate (5)
Uracil (5)
Valine (5)
2'-deoxycytidine (4)
4-acetamidobutanoate (4)
5-oxoproline (4)
7-methylguanine (4)
N-acetylvaline (4)

First Public Date

2013 (3)
2017 (2)
2014 (2)
2026 (1)
2023 (1)
2015 (1)

Modelling Approach

Ordinary differential equation model (2)
Constraint-based model (1)

Lab affiliation

Department of Clinical Microbiology, Sahlgrenska University Hospital, Gothenburg, Sweden (2)
Department of Medical Biochemistry and Biophysics, Karolinska Institute, Sweden (2)
School of Biological and Behavioural Sciences Queen Mary University of London (2)
- University of Cambridge, Department of Genetics, Downing Street, Cambridge CB2 3EH, UK - Division of Biology and Biological Engineering, California Institute of Technology, 1200 E. California Blvd, Pasadena, California 91125, USA (1)
1 Cambridge Systems Biology Centre, University of Cambridge, Cambridge, UK 2 Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, Cambridge, UK 3 Department of Biochemistry, University of Cambridge, Cambridge, UK (1)
Assistant Professor & K12 Scholar Translational Glycobiology Institute, Department of Translational Medicine Florida International University | Herbert Wertheim College of Medicine (1)
Assistant Professor Department of Cellular and Molecular Medicine Florida International University | Herbert Wertheim College of Medicine (1)
BioMediTech & Tampere University Hospital, Faculty of Medicine and Health Technology, Tampere University, Arvo Ylpön katu 34 (ARVO), FI-33520 Tampere, Finland (1)
Biosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, United Kingdom (1)
Bristol Myers Squibb (1)
Broad Institute (1)
Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada (1)
Center FOr Cancer Research Development, Proteomics Core Facility, Rhode Island Hospital, Providence, RI, USA (1)
Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography and University of California San Diego, 9500 Gilman Dr #0204, La Jolla, CA 92093, USA (1)
Centre for Haemato Oncology Barts Cancer Institute Queen Mary University of London Charter House Square London EC1M 6BQ (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich, Bavaria, Germany (1)
Department of Biosciences, University of Milan, Via Celoria 26, 20133, Milan (Italy) (1)
Department of Clinical Microbiology, Sahlgrenska University Hospital, SE-41346 Gothenburg, Sweden (1)
Department of Diabetes Complications and Metabolism, Beckman Research Institute, City of Hope, Duarte, CA 91010 (1)
Department of Infectious Diseases, Institute of Biomedicine, Sahlgrenska Academy, University of Gothenburg, 40530 Gothenburg, Sweden. Department of Clinical Microbiology, Sahlgrenska University Hospital, Region Västra Götaland, 41345 Gothenburg, Sweden. (1)
Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Sweden (1)
Department of Medical Biochemisty and Biophysics, Karolinska Institute, Sweden (1)
Department of Molecular Biology and Genetics (1)
Department of Molecular Systems Biology, Helmholtz Centre for Environmental Research – UFZ, Permoserstraße 15, 04318 Leipzig, Germany (1)
Department of Molecular and Cellular Hemostasis Plasma Proteins, Sanquin Research, Amsterdam, The Netherlands (1)
Director, Advanced Clinical Biosystems Institute, Cedars Sinai Medical Center (1)
Early Detection and Prevention, Translational Genomics Research Institute, Phoenix, AZ  Integrated Mass Spectrometry Shared Resource, City of Hope Comprehensive Cancer Center, Duarte, CA  (lab head) (1)
Faculty of Health and Medical Sciences University of Surrey (1)
Glasgow University (1)
Head of the Department, Proteomics Core (1)

IsPrivate

False (3)

Submitter Keywords

Immuno-oncology (1)

Classification

bacteria (1)

Modification

Not available (1)

Study type

Transcription profiling by array (108)
RNA-seq of coding RNA (16)
ChIP-seq (7)
MicroRNA profiling by array (6)
Unknown experiment type (3)
Genotyping by array (3)
Other (3)
Methylation profiling by array (3)
RNA-seq of coding RNA from single cells (3)
Transcription profiling by RT-PCR (2)
RNA-seq of non coding RNA (2)
ChIP-chip by tiling array (1)
RNAi profiling by array (1)
DNA-seq (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (585)
2021 (563)
2023 (527)
2024 (511)
2025 (505)
2020 (432)
2019 (344)
2018 (325)
2015 (265)
2017 (261)
2016 (245)
2014 (181)
2013 (158)
2011 (114)
2012 (111)
2026 (84)
2010 (76)
2009 (62)
2008 (55)
2007 (24)
2006 (18)
2003 (7)
2004 (6)
2002 (6)
2005 (5)
2001 (5)
1999 (3)
2000 (2)
1998 (2)
1997 (2)

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X!Tandem E. coli large vs small database

A comparison of the performance when using X!Tandem with a 1) large, exhaustive, reference database; and 2) small, specialized, database.

ORGANISM(S): Escherichia coli

2017-04-21 | PXD005924 | Pride

Database E. coli Tandem ms

Sagittula stellata E-37

A lignin-transforming bacterium

PRJNA18971 | ENA

Distribution of potentially toxic elements (PTEs) in tailings, soils, and plants around Gol-E-Gohar iron mine, a case study in Iran.

Not available

S-EPMC5711535 | biostudies-literature

GNPS - Lomaiviticin A C D E - purified

LCMS run of LC-purified lomaiviticins A, C, D & E - Reference: Kersten, R.D., Lane, A.L., Nett, M., Richter, T.K., Duggan, B.M., Dorrestein, P.C., Moore, B.S. Bioactivity-Guided Genome Mining Reveals the Lomaiviticin Biosynthetic Gene Cluster in Salinispora tropica. Chembiochem 14, 955-962 (2013).

ORGANISM(S): Salinispora Tropica Cnb440

2014-05-22 | MSV000078664 | GNPS

Substrate-dependent effects of quaternary structure on RNase E activity.

Not available

S-EPMC7849360 | biostudies-literature

Prostaglandin E₂ suppresses allergic sensitization and lung inflammation by targeting the E prostanoid 2 receptor on T cells.

Not available

S-EPMC3960315 | biostudies-literature

e-Therapies in England for stress, anxiety or depression: how are apps developed? A survey of NHS e-therapy developers.

Not available

S-EPMC7062334 | biostudies-literature

Association of variants in two vitamin e transport genes with circulating vitamin e concentrations and prostate cancer risk.