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TranscriptomicsExpression data in Arabidopsis fry1-6, xrn2-4, xrn3-3 and xrn4-6 mutants.
We applied the tiling arrays to study the Arabidopsis whole-genome transcriptome in Arabidopsis fry1-6, xrn2-4, xrn3-3 and xrn4-6 mutants. The total RNA was prepared from 15-day-old Arabidopsis plants grown on the agar plates and used for the microarray hybridization. Three replicative hybridizati...
ORGANISM(S): Arabidopsis thaliana 
2012-05-02 | E-GEOD-32977 | biostudies-arrayexpress
TranscriptomicsExpression data for drought-, cold, high-salinity and ABA treatment in Arabidopsis plants
We applied the tiling arrays to study the Arabidopsis whole-genome transcriptome under drought, cold, high-salinity and ABA treatment conditions and idenfied many stress- or ABA- responsive putative functional RNAs and fully-overlapping sense-antisense transcripts in Arabidopsis genome. Keywords: st...
ORGANISM(S): Arabidopsis thaliana 
2008-11-19 | E-GEOD-9646 | biostudies-arrayexpress
TranscriptomicsExpression data for the mom1-2 mutant of Arabidopsis
Heterochromatin is an inert region in the genome and composed of mainly remnants of transposons and repetitive elements. In Arabidopsis, the major heterchromatin regions are present at around centromeres (pericentromeric regions) and at a region on the short arm of chromosome 4 (heterochromatin knob...
ORGANISM(S): Arabidopsis thaliana 
2010-09-26 | E-GEOD-13092 | biostudies-arrayexpress
TranscriptomicsDevelopment of a high-density oligo microarray of cassava, an important tropical crop
We developed a 60-mer oligonucleotide Agilent microarray representing about 20,000 cassava genes and applied it to expression profiling under drought stress. We demonstrated that our microarray is an useful tool for analyzing the cassava transcriptome and that it can be applied to various cassava sp...
ORGANISM(S): Manihot esculenta subsp. peruviana 
2012-06-14 | E-GEOD-31749 | biostudies-arrayexpress
TranscriptomicsExpression data in Arabidopsis aba2-1 mutant, cyp707a1-1a2-1a3-1 triple mutant seeds, embryo and endosperm tissues
We applied the tiling arrays to study the Arabidopsis whole-genome transcriptome in aba2-1, cyp707a1-1a2-1a3-1 triple mutants seeds, embryo and endosperm tissues Freshly harvested seeds were imbibed in 8.5 cm Petri dishes containing two filter papers (approximately 7 cm diameter) and 2 mL of water a...
ORGANISM(S): Arabidopsis thaliana 
2010-04-15 | E-GEOD-15700 | biostudies-arrayexpress
TranscriptomicsExpression data in Arabidopsis axe1-5 and met1-3 mutants.
We applied the tiling arrays to study the Arabidopsis whole-genome transcriptome in Arabidopsis axe1-5 and met1-3 mutants. Fifteen-day-old Arabidopsis plants grown on the agar plates were harvested. The total RNA was prepared from 15-day-old Arabidopsis plants (axe1-5 (hda6 mutant), DR5 (parental li...
ORGANISM(S): Arabidopsis thaliana 
2011-05-15 | E-GEOD-23950 | biostudies-arrayexpress
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