Morpheus - OmicsDI

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Proteomics (49)
Unknown (39)
Genomics (17)
Models (12)
Transcriptomics (12)
Clinical (1)
Other (1)
Metabolomics (1)

Organisms

Mycobacterium tuberculosis SP7 (47)
Mycobacterium tuberculosis SP10 (47)
Mycobacterium tuberculosis SP13 (47)
Mycobacterium tuberculosis SP22 (47)
Chlamydomonas reinhardtii (47)
Enterococcus mundtii CRL35 (47)
Oncorhynchus tshawytscha (47)
Pseudomonas canadensis (47)
Pseudomonas aeruginosa PAO1H2O (47)
Human alphaherpesvirus 1 strain 17 (47)
Mycobacterium tuberculosis SP1 (47)
Marchantia polymorpha subsp. ruderalis (47)
Methylocystis sp. (47)
Exiguobacterium sp. SH31 (47)
Palaemonetes sp. common grass shrimp associated circular virus (47)
Amaranthus tricolor (47)
Spirochaeta sp. ELBA (47)
Clavibacter nebraskensis NCPPB 2581 (47)
Porites pukoensis (47)
Porphyromonas gingivalis (47)
Leishmania tarentolae (47)
Porphyromonas gingivalis W83 (47)
Human betaherpesvirus 5 (47)
Arabidopsis thaliana (8)
Mus musculus (5)
Homo sapiens (3)
Salvelinus leucomaenis (1)
Oncorhynchus masou masou (1)
Danio rerio (1)
Drosophila melanogaster (1)

Organisms

Mus musculus (5)
Caradrina morpheus (4)
Arabidopsis thaliana (2)

Repository

pride (47)
biostudies-arrayexpress (15)
ENA (12)
BioModels (7)
FAIRDOMHub (5)
geo (2)
MassIVE (2)
GPMDB (1)
MetaboLights (1)

Tissue

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Disease

Glioblastoma (2)
Breast cancer (2)
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Colorectal Neoplasms (1)
Not Available (1)
Becker muscular dystrophy (1)
Niemann-Pick disease type C2 (1)
Duchenne muscular dystrophy (1)
Chikungunya (1)
Inflammatory bowel disease (1)
Lysosomal storage disease (1)
Human immunodeficiency virus infectious disease (1)
Malignant neoplasm of ovary (1)

Technology Type

Mass Spectrometry (47)
Shotgun proteomics (26)
Bottom-up proteomics (11)
Data-dependent acquisition (8)
Affinity purification coupled with mass spectrometry proteomics (5)
Data-independent acquisition (3)
Top-down proteomics (3)
SWATH MS (2)
NMR spectroscopy (1)
MSE (1)
DiaPASEF (1)
Gel-based experiment (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina HiSeq 2000 (3)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 4000 (1)
Instrument (1)
LTQ Orbitrap Elite (1)
Q Exactive (1)
Bruker (1)

Publication Date

2021 (11)
2025 (9)
2023 (7)
2026 (7)
2022 (7)
2024 (7)
2018 (5)
2010 (5)
2020 (5)
2015 (4)
2014 (3)
2017 (3)
2019 (3)
2016 (2)
2009 (1)

CHEBI ID

CHEBI:16135 (1)
CHEBI:17741 (1)
CHEBI:16628 (1)
CHEBI:27389 (1)
CHEBI:35932 (1)
CHEBI:67119 (1)
CHEBI:30751 (1)
CHEBI:37684 (1)
CHEBI:15366 (1)
CHEBI:16236 (1)
CHEBI:37084 (1)
CHEBI:16870 (1)
CHEBI:17712 (1)
CHEBI:30763 (1)
CHEBI:30746 (1)
CHEBI:18066 (1)
CHEBI:16010 (1)
CHEBI:17200 (1)
CHEBI:17553 (1)
CHEBI:44215 (1)
CHEBI:48430 (1)
CHEBI:50599 (1)
CHEBI:30887 (1)
CHEBI:17821 (1)
CHEBI:15891 (1)
CHEBI:15611 (1)
CHEBI:16709 (1)
CHEBI:17287 (1)
CHEBI:18132 (1)
CHEBI:7916 (1)

Metabolite Name

UDP-N-Acetylglucosamine (1)
Pi-Methylhistidine (1)
2-Oxoisocaproate (1)
B-Alanine (1)
Guanidoacetate (1)
3-Hydroxyisovalerate (1)
N,N-Dimethylformamide (1)
Pyroglutamic Acid (1)
3-Methyl-2-oxovalerate (1)
O-Phosphocholine (1)
3-Hydroxybutyrate (1)
Isobutyrate (1)
3-Aminoisobutyrate (1)
Ethanol (1)
Creatine phosphate (1)
Cystathionine (1)
Formate (1)
Acetate (1)
UDP-glucuronate (1)
UDP-glucose (1)
UDP-galactose (1)
Sn-Glycero-3-phosphocholine (1)
Aspartate (1)
Valine (1)
2-Oxoglutarate (1)
1-Methylnicotinamide (1)
Leucine (1)
Histidine (1)
Malic Acid (1)
Thymine (1)

First Public Date

2026 (4)
2020 (2)
2014 (2)
2024 (1)
2023 (1)
2021 (1)
2018 (1)

Modelling Approach

Partial differential equation model (4)
Dynamical characteristic (2)
Spatial characteristic (2)
Agent-based model (1)

Study status

Terminated (1)

Lab affiliation

Division of Cell Signalling and Immunology, University of Dundee, Dundee, UK. (2)
Burns and Trauma Research,School of Biomedical Sciences, Queensland University of Technology (2)
Department of Anatomy and Cell Biology, Université de Sherbrooke, Canada (1)
Washington University in St. Louis; University of Wisconsin-Madison (1)
University of Lille (1)
Division of Chemistry I, Head Department of Medical Biochemistry & Biophysics Karolinska Institutet Scheelesväg 2, SE 17177 Stockholm, Sweden (1)
Program in Membrane Biology Nephrology Division Massachusetts General Hospital Harvard Medical School (1)
Head, Department of Life Sciences, Mumbai University (1)
Department of Pathology, School of Medicine, Johns Hopkins University (1)
Institute for Biochemistry II, University Hospital, Frankfurt, Germany Buchmann Institute for Molecular Life Science, Frankfurt, Germany (1)
Dept. Proteomics and Signal Transduction Max Planck Institute of Biochemistry Am Klopferspitz 18 82152 Martinsried (near Munich) Germany (1)
Chemistry Institute, LADETEC, Proteomics Laboratory, UFRJ, RJ, Brazil. (1)
Cancer Research UK Scotland Centre Institute of Genetics and Cancer University of Edinburgh (1)
i3S - Instituto de Investigação e Inovação em Saúde, Universidade do Porto, Portugal (1)
The University of Sheffield Infection, Immunity and Cardiovascular Diseases Department,Firth Court, Western Bank, Sheffield, S10 2TN (1)
Department of Biology, Washington University-St. Louis St. Louis, Missouri 63130 USA (1)
Unidade Proteômica, Departamento de Bioquímica, Instituto de Química, Universidade Federal do Rio de Janeiro; Laboratório de Proteômica (LabProt), LADETEC, Instituto de Química, Universidade Federal do Rio de Janeiro; Centro de Pesquisa em Medicina de Precisão, Instituto de Biofísica Carlos Chagas Filho, Universidade Federal do Rio de Janeiro (1)
Laboratory of Experimental Cancer Research, Department of Radiation Oncology and Experimental Cancer Research, Ghent University, Ghent, Belgium. Cancer Research Institute Ghent, Ghent University, Ghent, Belgium. (1)
Head, Department of Life Sciences, Mumbai University, Mumbai (1)
Proteomics and Modomics Experimental Core Facility (PROMEC) Laboratory Centre, 4th floor East Wing, Room 231.04.008 Erling Skjalgssons gate 1, Trondheim, Norway (1)
CSIR-CCMB (1)
Department of Cell Biology, Blavatnik Institute, Harvard Medical School, Boston, MA 02115, USA. (1)
Unidade de Espectrometria de Massas e Proteômica (UEMP) Programa de Biologia Estrutural Bloco D, Primeiro andar, Sala 45 – Centro de ciências da saúde - Universidade Federal do Rio de Janeiro (1)
Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA. (1)
Laboratory of Protein Chemistry and Biochemistry, Institute of Biology, Department of Cell Biology, University of Brasília, Brasília, Brazil (1)
Principal Scientist, CSIR- Centre for Cellular and Molecular Biology, Hyderabad, India (1)
Université de Paris, Inserm UMR 1141 NeuroDiderot, F-75019Paris (1)
Massachusetts General Hospital/Harvard Medical School (1)
U o Cambridge (1)
Laboratoire Polymères, Biopolymères, Surfaces, UMR CNRS 6270, Université de Rouen, 76821 Mont-Saint-Aignan cedex, France (1)

Keyword

REGORAFERIB (1)
IMPRIME PGG (1)
Idasanutlin (1)
ISATUXIMAB (1)
Selicrelumab (1)
Atezolizumab (1)
Bevacizumab (1)

IsPrivate

False (7)

Study type

Transcription profiling by array (3)
Methylation profiling by high throughput sequencing (3)
RNA-seq of coding RNA (3)
Transcription profiling by tiling array (2)
ChIP-seq (2)
RNA-seq of total RNA (2)
Interventional (1)

Release Date

2023 (7)
2022 (7)
2015 (6)
2010 (5)
2018 (4)
2014 (4)
2025 (4)
2019 (4)
2021 (2)
2017 (2)
2016 (2)
2012 (2)
2006 (2)
2026 (1)
2009 (1)
2002 (1)

Location

Australia (1)
United Kingdom (1)
Switzerland (1)
Spain (1)
France (1)
South Korea (1)
United States (1)

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Morpheus Spectral Counter - Morpheus spectral counter: a computational tool for label-free quantitative mass spectrometry using the morpheus search engine

Label-free quantitative mass spectrometry (MS) based on the Normalized Spectral Abundance Factor (NSAF) has emerged as a simple and reasonably robust method to determine the relative abundance of individual proteins within complex mixtures. Here, we describe Morpheus Spectral Counter (MSpC) as the ...

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2016-02-24 | PXD003002 | Pride

Expression data for the mom1-2 mutant of Arabidopsis

Heterochromatin is an inert region in the genome and composed of mainly remnants of transposons and repetitive elements. In Arabidopsis, the major heterchromatin regions are present at around centromeres (pericentromeric regions) and at a region on the short arm of chromosome 4 (heterochromatin knob...

ORGANISM(S): Arabidopsis thaliana

2010-09-26 | E-GEOD-13092 | biostudies-arrayexpress

ilCarMorp

Caradrina morpheus, ilCarMorp

PRJEB123753 | ENA

ilCarMorp2

Caradrina morpheus genome assembly, ilCarMorp2

PRJEB124464 | ENA

ilCarMorp

Caradrina morpheus, genomic and transcriptomic data

PRJEB123752 | ENA

ilCarMorp2 alternate haplotype