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TranscriptomicsGenome-wide transcriptomic analysis of the sporophyte of the moss Physcomitrella patens
Bryophytes are the most basal of the extant land plants. A major feature of these plants is the biphasic alteration of generations between a dominant haploid gametophyte and a minor diploid sporophyte phase. To analyse the differences in the transcriptome of the early gametophyte (protonema) and ear...
ORGANISM(S): Physcomitrella patens 
2013-07-29 | E-GEOD-32928 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of moss Physcomitrella patens subjected to water stress by means of mannitol, NaCl, abscisic acid and drought
Experiment to identify genes for responding to water stress in the moss Physcomitrella patens using various available water stresses such as mannitol, NaCl, and drought. Treatments were carried out on duplicate tissue samples. RNA isolated independently from each tissue sample and monitored for stre...
ORGANISM(S): Physcomitrella patens 
2008-02-23 | E-TABM-225 | biostudies-arrayexpress
TranscriptomicsThe DNA damage response transcriptome of the moss Physcomitrella patens
The moss Physcomitrella patens is remarkable for the ease with which mutant alleles of any gene can be generated by highly efficient homologous recombination-mediated gene targeting. Targeted transgene integration is believed to be mediated through the capture of transforming DNA by the homologous r...
ORGANISM(S): Physcomitrella patens 
2010-11-10 | E-GEOD-25237 | biostudies-arrayexpress
ProteomicsTranscriptomic and proteomic analysis of alternative splicing in Physcomitrella patens moss
Alternative splicing (AS) has a significant potential to impact on the eukaryotic cell transcriptome and proteome. However, the extent of this influence as well as mechanisms, providing the tissue-specific pattern of AS are poorly studied. Here, we analyzed the AS of two life forms, protonema and g...
ORGANISM(S): Physcomitrella patens subsp. patens (Moss) 
2018-01-15 | PXD005223 | Pride
Alternative splicing Physcomitrella patens moss Long non-coding rnas Proteome 
ProteomicsQuantitative proteomic dataset of the moss Physcomitrium patens PpRALF knockout lines
RAPID ALKALINIZATION FACTOR (RALF) peptides are shown to regulate multiple physiological processes in plants, including modulation of immune response in angiosperms. This family of cysteine-rich peptide hormones has considerably expanded during land plant evolution, but the ancestral roles of RALF ...
ORGANISM(S): Physcomitrella patens subsp. patens (Moss) 
2023-01-20 | PXD037111 | Pride
Ralf peptides Itraq Proteome 
ProteomicsQuantitative proteomic dataset of the moss Physcomitrium patens SMG1 KO mutant line
Here, we provide an isobaric tag for relative and absolute quantitation (iTRAQ)-based quantitative proteomic dataset of the moss Physcomitrium patens smg1 knockout line. The kinase SMG1 is one of the key components of the NMD system in many organisms, including plants. Several lines with a deleted...
ORGANISM(S): Physcomitrella patens subsp. patens (Moss) 
2021-11-02 | PXD029205 | Pride
Nmd Physcomitrium patens Itraq 
ProteomicsMoss proteomes, LC-MS/MS - proteome data analysis
Short (<100 codons) open reading frames (sORFs) are common features of all genomes. Proof of translation of sORFs is an important step towards finding of functional sORF-encoded peptides (SEPs). We verified translation of our predicted sORFs using mass-spectrometry (MS) analysis which is often cons...
ORGANISM(S): Physcomitrella patens subsp. patens (Moss) 
2019-08-08 | PXD007973 | Pride
Moss tissue 
Genomicsmoss metagenome
Competition for newly fixed N2 within the boreal bryosphere
PRJNA376120 | ENA
TranscriptomicsTranscription profiling of Physcomitrella patens Reute strain
Transcription profiling of Physcomitrella patens Reute strain gametophore, mature sporophyte and spore stage. These samples are part of an large-scale expression data set for the model moss Physcomitrella patens.
ORGANISM(S): Physcomitrella patens 
2014-04-15 | E-MTAB-916 | biostudies-arrayexpress
TranscriptomicsGenome-wide transcriptomic analysis of the sporophyte of the moss Physcomitrella patens
Bryophytes are the most basal of the extant land plants. A major feature of these plants is the biphasic alteration of generations between a dominant haploid gametophyte and a minor diploid sporophyte phase. To analyse the differences in the transcriptome of the early gametophyte (protonema) and ear...
ORGANISM(S): Physcomitrium patens 
2013-07-29 | GSE32928 | GEO
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