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TranscriptomicsH2-ab1 Mouse Parent of Origin
We looked for parent of origin effects on genome-wide gene expression in a reciprocal cross between C57BL/6J x B6(C)-H2bm12/KhEgJ mice (the latter strain is a knockout of H2-ab1 on a C57BL/6J background). The aim is to find genes whose expression is altered in trans depending on whether the mother o...
ORGANISM(S): Mus musculus 
2013-11-01 | E-MTAB-1998 | biostudies-arrayexpress
no omics definedTranscription profiling of two highly salt-tolerant wheat lines, their parental lines, and a salt-sensitive line in salt stress and control growth conditions
Comparative expression analysis between two highly salt-tolerant wheat lines, their parental lines, and a salt-sensitive line. The Chinese Spring (CS) line is salt sensitive. AJDAj5 and PhI are the two parental lines (with Chinese Spring background), and both have some salt-tolerance. W4909 and W491...
ORGANISM(S): Triticum aestivum 
2007-07-26 | E-MEXP-971 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of mouse hippocampus, lung and liver for expression quanitative trait analysis
A proportion of the genetic variants underlying complex phenotypes do so through their effects on gene expression, so an important challenge in complex trait analysis is to discover the genetic basis for the variation in transcript abundance. So far, the potential of mapping both quantitative trait ...
ORGANISM(S): Mus musculus 
2009-10-22 | E-MTAB-88 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of mouse inbred strains (8) on Affymetrix exon specific array
Expression profiling of 8 mouse inbred strains on Affymetrix exon specific array
ORGANISM(S): Mus musculus 
2009-06-04 | E-MTAB-86 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of C. elegans after infection with Microbacterium nematophilum
Genomic response of C. elegans after infection with Microbacterium nematophilum.

The interaction between the nematode Caenorhabditis elegans and a Gram-positive bacterial pathogen, Microbacterium nematophilum, provides a model for an innate immune response in nematodes. This pathogen adheres ...
ORGANISM(S): Caenorhabditis elegans 
2005-01-01 | E-MEXP-696 | biostudies-arrayexpress
TranscriptomicsRNA-seq from heart tissue of 192 heterogeneous stock rats
We measured heart gene expression in 192 heterogeneous stock rats. These animals were part of a larger cohort that were extensively phenotyped and genotyped and originally published in PMID: 23708188, although the gene expression data here were not included in that study.
ORGANISM(S): Rattus norvegicus 
2023-04-03 | E-MTAB-12701 | biostudies-arrayexpress
TranscriptomicsRNA-seq from amygdala tissue of 205 heterogeneous stock rats
We measured amygdala gene expression in 205 Heterogeneous Stock (N:HS) rats. These animals were part of a larger cohort that were extensively phenotyped and genotyped and originally published in PMID: 23708188, although the gene expression data here were not included in that study.
ORGANISM(S): Rattus norvegicus 
2023-04-03 | E-MTAB-12693 | biostudies-arrayexpress
TranscriptomicsSeedling transcriptome sequencing of the Arabidopsis thaliana MAGIC founder accessions
We have sequenced messenger RNA isolated from seedling tissue for 19 accessions of Arabidopsis thaliana (with biological replication). The 19 accessions for which RNA-Seq reads were collected have served as the founders for the MAGIC lines, a high-resolution recombinant inbred line mapping resource...
ORGANISM(S): Arabidopsis thaliana 
2011-08-29 | E-GEOD-30720 | biostudies-arrayexpress
TranscriptomicsMultiple tissue RNA sequencing of two Arabidopsis thaliana MAGIC founder accessions
We sequenced messenger RNA isolated from seeding, root, and floral bud tissue for 2 MAGIC founder accessions of Arabidopsis thaliana. The resulting data was used for validation of gene models, and provides a resource to assess tissue-specific expression. Examination of RNA expression across tissues ...
ORGANISM(S): Arabidopsis thaliana 
2011-08-29 | E-GEOD-30795 | biostudies-arrayexpress
TranscriptomicsPre-Collaborative Cross liver gene expression
The Collaborative Cross (CC) recombinant inbred panel was conceived as an ideal resource for mammalian system genetics. The pre-CC is a proof-of-concept experiment involving CC lines that have undergone at least five generations of inbreeding. Siblings from these lines were each involved in one of...
ORGANISM(S): Mus musculus 
2010-12-01 | E-GEOD-22297 | biostudies-arrayexpress
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