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ProteomicsEnhancer DNA pull-down of proteins extracted from PA2 tissue of mouse E11.5 embryos
Enhancers, through the combinatorial action of transcription factors (TFs), dictate both the spatial specificity and the levels of gene expression, and their aberrations can result in diseases. While HMX1 downstream enhancer is associated to ear malformations, the mechanisms underlying bilateral con...
ORGANISM(S): Mus musculus (Mouse) 
2025-04-28 | PXD063373 | Pride
Dna pull-down Mouse e11.5 embryos 
GenomicsDNase-seq profile of E11.5 whole mouse embryos
DNase-seq profile of E11.5 whole mouse embryos
PRJEB9077 | ENA
GenomicsBivalent Chromatin Marks Developmental Regulatory Genes in the Mouse Embryonic Germline in Vivo
We developed a ChIP protocol for the analysis of histone marks using less than 10,000 cells per IP, and used it to investigate the chromatin state of E11.5 mouse primordial germ cells (PGCs). A genome-wide ChIP-Seq analysis of E11.5 PGCs revealed a distribution of H3K4me3/H3K27me3 bivalent domains h...
ORGANISM(S): Mus musculus 
2013-05-30 | E-GEOD-46396 | biostudies-arrayexpress
GenomicsSingle-cell RNA-sequencing of angioblasts and endothelial cells from E9.5-E11.5 mouse embryos
Single-cell RNA-sequencing of angioblasts and endothelial cells from E9.5-E11.5 mouse embryos
PRJNA1156232 | ENA
GenomicsSingle-cell RNA-sequencing of angioblasts and endothelial cells from E9.5-E11.5 mouse embryos
Single-cell RNA-sequencing of angioblasts and endothelial cells from E9.5-E11.5 mouse embryos
PRJNA819963 | ENA
GenomicsChIP-Seq of mouse second branchial arch cells with antibody against Hoxa2
Chromatin immunoprecipitation of Hoxa2 in second branchial arch cells from E11.5 mouse embryos detected by SOLiD sequencing
ORGANISM(S): Mus musculus 
2012-01-17 | E-MTAB-711 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of mouse HoxA2 knockout
Transcription profiling was performed of second branchial arches of E11.5 embryos from Hoxa2+/- intercrosses. After genotyping the embryos, wild type and Hoxa2-/- were profiled by microarray.
ORGANISM(S): Mus musculus 
2011-12-01 | E-MEXP-3261 | biostudies-arrayexpress
TranscriptomicsExpression data from E11.5 mouse branchial arch 1 (BA1) - comparison between Ezh2lox/lox and Wnt1Cre Ezh2lox/lox embryos
Conditional ablation of Ezh2 in the neural crest lineage results in loss of the neural crest-derived mesenchymal derivatives. In this data sheet we determine gene expression analysis in Ezh2lox/lox and Wnt1Cre Ezh2lox/lox in E11.5 mouse BA1 cells. Conditional ablation of Ezh2 in the neural crest lin...
ORGANISM(S): Mus musculus 
2013-11-09 | E-GEOD-52220 | biostudies-arrayexpress
TranscriptomicsAlternative splicing is frequent during early embryonic development in mouse
Background Alternative splicing is known to increase the complexity of mammalian transcriptomes since nearly all mammalian genes express multiple pre-mRNA isoforms. However, our knowledge of the extent and function of alternative splicing in early embryonic development is based mainly on a few isola...
ORGANISM(S): Mus musculus 
2010-07-30 | E-GEOD-21971 | biostudies-arrayexpress
GenomicsDNase-seq profile of E11.5 whole mouse embryos
The aim of this experiment was to profile the DNase-I accessibility landscape of E11.5 whole mouse embryos. Separate fractions were taken for DNA cleavages of length 50-100bp and 175-400bp.
ORGANISM(S): Mus musculus 
2015-04-11 | E-MTAB-3468 | biostudies-arrayexpress
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