Mouse es-cells - OmicsDI

Show results for

Genomics (2029)
Transcriptomics (1799)
Unknown (861)
Proteomics (101)
Other (36)
Methylation profiling (29)
Metabolomics (5)

Organisms

Mus musculus (2139)
Homo sapiens (309)
Aerococcus urinae NBRC 15544 = CCUG 36881 (89)
Alteromonadales (89)
Canis lupus familiaris (89)
Carya cathayensis (89)
Clostridioides difficile 630 (89)
Cyanophora paradoxa (89)
Ectopseudomonas oleovorans CECT 5344 (89)
Ensifer adhaerens (89)
Rattus norvegicus (13)
Macaca mulatta (10)
Sus scrofa (7)
Danio rerio (6)
Bos taurus (5)
Mus musculus x Mus spretus (5)
Xenopus laevis (4)
Drosophila melanogaster (4)
Arabidopsis thaliana (3)
Saccharomyces cerevisiae (3)
Callithrix jacchus (2)
Mus musculus domesticus x M. m. molossinus (1)
Euphausia superba (1)
unidentified (1)
Macaca fascicularis (1)
Francisella tularensis (1)
Oryctolagus cuniculus (1)
Gallus gallus (1)
other sequences (1)
synthetic construct (1)

Organisms

Mus musculus (1156)
Homo sapiens (53)
Danio rerio (4)
Rattus norvegicus (4)
Mus musculus x Mus spretus (2)
Mus musculus domesticus (2)
Sus scrofa (2)
Bos taurus (2)
unidentified (2)
Homo sapiens/Mus musculus xenograft (1)
Euarchontoglires (1)
Heterocephalus glaber (1)
Cricetulus griseus (1)
Mus musculus musculus (1)
Neogale vison (1)
Macaca mulatta (1)
Gallus gallus (1)
synthetic construct (1)

Repository

biostudies-arrayexpress (1721)
ENA (1420)
geo (749)
pride (89)
EGA (5)
jPOST (5)
MetaboLights (5)
MassIVE (4)
ExpressionAtlas (1)
NODE (1)
PeptideAtlas (1)

Tissue

Embryonic stem cell (42)
Cell culture (34)
Stem cell (10)
Embryo (7)
Early embryonic cell (6)
T cell (6)
Lymph node (4)
Brain (2)
Cell suspension culture (2)
Microglial cell (2)
Permanent cell line cell (2)
Cell line (1)
Blood cell (1)
Bone marrow (1)
Dendritic cell (1)
Dermomyotome (1)
Fibroblast (1)
Melanocyte (1)
Mesoderm (1)
Microglia (1)
Midbrain (1)
Midbrain dopaminergic neuron (1)
Myotome (1)
Nerve cord (1)
Neuron differentiation (1)
Oocyte (1)
Paraxial mesoderm (1)
Peripheral blood mononuclear cell (1)
Placenta (1)
Placental villous trophoblast (1)

Disease

Normal (5)
Disease free (4)
Glioblastoma multiforme (3)
Basal cell carcinoma, Gorlin-Goltz syndrome (1)
Not yet visible (1)
UV inactivated HSV-1 infected (1)
NA (1)
N/a (1)
Alzheimer's disease (1)
Amyotrophic lateral sclerosis (1)
Chronic myeloid leukemia (1)
Depression (1)
Frontotemporal dementia (1)
Glioblastoma (1)
Lysosomal storage disease (1)
Melanoma (1)
Severe acute respiratory syndrome (1)

Technology Type

Mass Spectrometry (89)
Shotgun proteomics (43)
Affinity purification coupled with mass spectrometry proteomics (27)
Bottom-up proteomics (16)
Data-dependent acquisition (8)
Mass spectrometry (5)
Data-independent acquisition (5)
Gel-based experiment (4)
HiSeq X Ten (ILLUMINA) (1)
Illumina HiSeq 2500 (1)
Affinity proteomics (1)
All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Top-down proteomics (1)

Instrument Platform

NextSeq 500 (33)
Illumina HiSeq 2000 (30)
Illumina HiSeq 2500 (24)
Illumina NovaSeq 6000 (24)
Illumina HiSeq 4000 (13)
Illumina Genome Analyzer IIx (8)
NextSeq 2000 (8)
Element AVITI (7)
Illumina MiSeq (7)
Illumina Genome Analyzer II (5)
Illumina NovaSeq X (5)
Illumina HiSeq 1500 (4)
GenePix 4000B [Axon Instruments] (3)
Illumina BeadArray reader (2)
Illumina HiSeq 1000 (2)
NextSeq 550 (2)
Illumina HiSeq 3000 (2)
Computer (1)
Wet Lab (1)
Tissue Culture Lab (1)
G2565BA Microarray Scanner (1)
Illumina Genome Analyzer Iix (1)
Fluidigm C1 (1)
Gene Titan Instrument system (1)
Affymetrix GeneChip WT Labeling Kit (1)
NanoDrop ND-1000A spectrophotometer. Agilent Bioanalyzer 2100 (1)
Linux computer (1)
Linux Beowulf cluster; AMD Opteron Linux Beowulf cluster; AMD Opteron 6168 (1)
ScanArray 4000 [PerkinElmer] (1)
G2565AA DNA microarray scanner [Agilent] (1)

Publication Date

2013 (325)
2015 (274)
2012 (260)
2014 (245)
2010 (225)
2011 (224)
2016 (162)
2008 (136)
2009 (106)
2017 (76)
2018 (62)
2021 (55)
2020 (53)
2026 (49)
2019 (48)
2024 (48)
2023 (48)
2025 (46)
2007 (46)
2022 (38)
2005 (25)
2006 (19)
2004 (5)

UNIPROT ID/AC

A0EQY3 (1)
A0JLQ7 (1)
A0PJC8 (1)
A0PJD7 (1)
A1A558 (1)
A1A596 (1)
A1E5T5 (1)
A1IGX7 (1)
A1L013 (1)
A1L0U3 (1)
A1L0U6 (1)
A1L317 (1)
A1L347 (1)
A1L366 (1)
A1L3B6 (1)
A1Z2X7 (1)
A2A4P0 (1)
A2A547 (1)
A2A5N2 (1)
A2A5Y4 (1)
A2A654 (1)
A2A6A1 (1)
A2A6T1 (1)
A2A7A1 (1)
A2A7A2 (1)
A2A7B5 (1)
A2A7I1 (1)
A2A7S7 (1)
A2A7S8-2 (1)
A2A838 (1)

ENSEMBL ID

ENSMUSG00000021039 (1)
ENSMUSG00000032652 (1)
ENSMUSG00000090272 (1)
ENSMUSP00000141097 (1)
ENSMUSP00000141637 (1)

CHEBI ID

CHEBI:24266 (4)
CHEBI:33508 (4)
CHEBI:15721 (4)
CHEBI:48928 (4)
CHEBI:32816 (4)
CHEBI:17835 (3)
CHEBI:17111 (3)
CHEBI:28013 (3)
CHEBI:15919 (3)
CHEBI:28997 (3)
CHEBI:17768 (3)
CHEBI:21626 (3)
CHEBI:27487 (3)
CHEBI:18335 (3)
CHEBI:16556 (3)
CHEBI:7125 (3)
CHEBI:18066 (3)
CHEBI:16552 (3)
CHEBI:17713 (3)
CHEBI:17172 (3)
CHEBI:15859 (3)
CHEBI:17200 (3)
CHEBI:26984 (3)
CHEBI:26374 (3)
CHEBI:48430 (3)
CHEBI:166830 (3)
CHEBI:59783 (3)
CHEBI:17822 (3)
CHEBI:26271 (3)
CHEBI:18132 (3)

Metabolite Name

Glycerate (2)
UDP-glucuronate (2)
UDP-glucose (2)
ADP (2)
GMP (2)
Alpha-ketoglutarate (2)
Isocitrate (2)
Lactate (2)
Succinate (2)
Fumarate (2)
Citrate (2)
Cis-Aconitate (2)
Deamido-NAD+ (1)
Malonyl CoA (1)
Isobutyryl CoA (1)
P1, P4-Di(adenosine-5') tetraphosphate (1)
CIMP (1)
Ribulose 1,5-diphosphate (1)
2',3'-cCMP (1)
2-Deoxyribose 1-phosphate (1)
Mucate (1)
Saccharate (1)
3-Indolebutyrate (1)
Dodecanoate (1)
Syringate (1)
O-Hydroxyhippurate (1)
Phenaceturate (1)
Undecanoate (1)
Serine O-sulfate (1)
Phenyl phosphate (1)

First Public Date

2014 (405)
2013 (143)
2015 (108)
2017 (100)
2024 (97)
2019 (75)
2021 (70)
2023 (66)
2022 (66)
2018 (66)
2016 (64)
2020 (57)
2025 (56)
2026 (37)
2012 (6)
2011 (3)
2010 (1)

Modification

4x(2)H labeled dimethylated residue (1)
Not available (1)

Study type

Transcription profiling by array (814)
ChIP-seq (312)
RNA-seq of coding RNA (263)
Methylation profiling by high throughput sequencing (78)
Other (37)
Methylation profiling by array (27)
ChIP-chip by tiling array (23)
RNA-seq of non coding RNA (23)
ChIP-chip by array (19)
Unknown experiment type (18)
Comparative genomic hybridization by array (18)
RNA-seq of coding RNA from single cells (12)
DNA-seq (10)
RNAi profiling by array (8)
Cell line - High-throughput sequencing (7)
RNA-seq of total RNA (7)
ATAC-seq (6)
CUT&RUN (6)
Transcription profiling by SAGE (5)
Transcription profiling by tiling array (3)
MicroRNA profiling by array (3)
Transcription profiling by RT-PCR (2)
RIP-seq (2)
Proteomic profiling by array (2)
PRO-seq (1)
Transcription profiling by high throughput sequencing (1)
GRO-seq (1)
FAIRE-seq (1)
Baseline (1)
MNase-seq (1)

Release Date

2013 (329)
2014 (278)
2015 (264)
2012 (257)
2010 (250)
2011 (229)
2016 (142)
2008 (138)
2009 (108)
2017 (72)
2007 (62)
2018 (56)
2021 (52)
2022 (48)
2019 (45)
2020 (42)
2023 (37)
2024 (34)
2006 (31)
2026 (25)
2025 (25)
2005 (25)
2004 (15)
2003 (7)
2002 (3)
2001 (2)
2000 (2)
1999 (1)
1998 (1)
1996 (1)

Lab affiliation

Institute of Human Genetics, Montpellier, France (3)
Cambridge Institute for Medical Research, University of Cambridge, Cambridge Biomedical Campus, CB2 0XY, UK (2)
DZNE Munich, Neuroproteomics, Feodor-Lynen-Str. 17, 81377 München, Germany (2)
Department of Gene Regulation Friedrich Miescher Institutefor Biomedical Research (2)
Department of Molecular Biology, Radboud Institute for Molecular Life Sciences, Radboud University, Nijmegen, The Netherlands (2)
Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology - Hellas (FORTH), 100, Plastira Str., 70013 Heraklion, Crete, Greece. (2)
1 The Finsen Laboratory, Rigshospitalet, Faculty of Health Sciences, University of Copenhagen, Denmark 2 Biotech Research and Innovation Centre (BRIC), University of Copenhagen, Copenhagen, Denmark 4 Novo Nordisk Foundation Center for Stem Cell Biology, DanStem, Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark (1)
Babraham Institute (1)
Babraham Institute Cambridge UK (1)
CNIO (1)
CNRS UMR7242, Biotechnology and Cell Signaling, 300 Bd Sébastien Brant, 67412 Illkirch Cedex, France University of Strasbourg (1)
Cambridge Centre for Proteomics, Cambridge Systems Biology Centre, Department of Biochemistry, University of Cambridge, Cambridge CB2 1QR, U.K. (1)
Cantrell Lab, Cell Signalling & Immunology, School of Life Sciences, University of Dundee (1)
Cell Signalling and Immunology Division, School of Life Sciences, University of Dundee (1)
Cell and Chemical Biology Leiden University Medical Center (1)
Chemistry Department, University of Minnesota (1)
Committee on Cancer Biology, The University of Chicago, Chicago, IL, USA Department of Pathology, The University of Chicago, Chicago, IL, USA Department of Pediatrics, The University of Chicago, Chicago, IL, USA The University of Chicago Medicine Comprehensive Cancer Center, University of Chicago, Chicago, IL, USA (1)
DZNE Munich Neuroproteomics Feodor-Lynen-Str. 17 81377 Munich Germany (1)
Department of Biochemistry University of Oxford South Parks Road Oxford OX1 3QU The United Kingdom. (1)
Department of Biochemistry, University of Cambridge (1)
Department of Biochemistry, University of Cambridge, UK (1)
Department of Cell Biology, Harvard Medical School, Boston MA, USA (1)
Department of Gene Regulation Friedrich Miescher Institute for Biomedical Research (1)
Department of Genetics, Stanford University (1)
Department of Genome Regulation, Max Planck Institute for Molecular Genetics; Berlin, Germany (1)
Department of Immunoregulation, Max Planck Institute of Biochemistry, 82152, Martinsried, Germany (1)
Department of Medical Sciences and Institute of Biomedicine - iBiMED, University of Aveiro, 3810-193 Aveiro, Portugal (1)
Department of Medicine, Cardiology division, Lillehei Heart Institute, University of Minnesota, USA (1)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands (1)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Radboud University Nijmegen, The Netherlands (1)

Previous page
1 / 487
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 487
Next page

Sort by:

Relevance

Page size

Genome-wide analysis of 5-hydroxymethylcytosine distribution reveals its dual function in transcriptional regulation in mouse embryonic stem cells

Recent studies have demonstrated that the Ten-eleven translocation (Tet) family proteins can enzymatically convert 5-methylcytosine (5mC) to 5-hydroxymethylcytosine (5hmC). While 5mC has been studied extensively, little is known about the distribution and function of 5hmC. Here we present a genome...

ORGANISM(S): Mus musculus

2011-03-30 | E-GEOD-27613 | biostudies-arrayexpress

PRSS1 gene mutated mouse ES cells

PRJNA488352 | ENA

Genome-wide distribution of 5-formylcytosine in ES cells is associated with transcription and depends on TDG

Methylation of cytosine in DNA (5mC) is an important epigenetic mark that is involved in the regulation of genome function. During early embryonic development in mammals, the DNA methylation landscape is dynamically reprogrammed in part through active demethylation. Recent advances have identified k...

ORGANISM(S): Mus musculus

2012-08-17 | E-GEOD-40148 | biostudies-arrayexpress

Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells (ChIP-chip and MeDIP-chip)

Epigenetic modification of the mammalian genome by DNA methylation (5-methylcytosine) has a profound impact on chromatin structure, gene expression and maintenance of cellular identity. Recent demonstration that members of the Ten-eleven translocation (Tet) family proteins can convert 5-methylcytosi...

ORGANISM(S): Mus musculus

2011-03-30 | E-GEOD-26827 | biostudies-arrayexpress

Mouse ES Cells: Wild type vs. Zscan5b knockout

PRJNA511819 | ENA

Epigenome and transcriptome of naive pluripotent mouse embryonic stem (ES) cells cultured in 2i serum-free medium

This study describes the epigenetic and transcriptome profiling of mouse ES cells cultures in 2i serum-free medium. The proteins for which ChIP-Seq profiles were generated in these cells, as well as for cells grown in serum conditions, include H3K4me3, H3K36me3, H3K27me3, H3K9me3, Suz12 and Ezh2. A...

ORGANISM(S): Mus musculus

2012-04-26 | E-GEOD-23943 | biostudies-arrayexpress

Genome wide analysis of gene expression of rat ES cells, rat embryonic fibroblast cells and mouse ES cells

PRJNA110431 | ENA

ChIP-seq O-GlcNac in mouse ES cells

PRJEB78517 | ENA

Transcriptome analysis of WT and ATRX KO Cast x 129 mouse ES cells

Analysis of gene expression in WT and ATRX KO Cast x 129 Mouse ES cells Paired end RNA-seq analysis of PolyA selected RNA and PolyA depeleted RNA from in both wildtype nd ATRX knocked out Castx129 Mouse ES Cells

ORGANISM(S): Mus musculus

2015-04-16 | E-GEOD-59269 | biostudies-arrayexpress

Transcription profiling of mouse ES cells and EpiSCs

The application of human embryonic stem (ES) cells in medicine; and biology has an inherent reliance on understanding the starting; cell population. Human ES cells differ from mouse ES cells and the; specific embryonic origin of both cell types is unclear. Previous; work suggested that mouse ES cell...

ORGANISM(S): Mus musculus

2008-06-19 | E-GEOD-7866 | biostudies-arrayexpress

Previous page
1 / 487
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 487
Next page

Sort by:

Relevance

Page size

4862 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

ENSEMBL ID

CHEBI ID

Metabolite Name

First Public Date

Modification

Study type

Release Date

Lab affiliation

Tags

OmicsDI is part of the ELIXIR infrastructure

Tweets