Mouse hepatitis virus

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Transcriptomics (1484)
Unknown (781)
Genomics (153)
Proteomics (34)
Methylation profiling (7)
Other (5)
Metabolomics (3)
Genomic (1)

Organisms

Mus musculus (982)
Homo sapiens (312)
Arabidopsis thaliana (84)
Rattus norvegicus (20)
Pseudomonas fluorescens (7)
Sus scrofa (7)
Drosophila melanogaster (7)
Danio rerio (7)
Gallus gallus (6)
Pseudomonas protegens (4)
Bos taurus (4)
Staphylococcus aureus (4)
Xenopus laevis (3)
Schizosaccharomyces pombe (3)
Oryza sativa (3)
Macaca mulatta (3)
Olea europaea (2)
Bacteroides thetaiotaomicron (2)
Bifidobacterium longum (2)
Brassica rapa (2)
Schistosoma mansoni (2)
Zea mays (2)
mixed sample (2)
Salmonella enterica subsp. enterica serovar Typhimurium (2)
Glycine max (2)
Ovis aries (2)
Babesia microti (1)
Tai Forest ebolavirus (1)
Vesicular stomatitis Indiana virus (1)
Lonicera japonica (1)

Organisms

Mus musculus (68)
Homo sapiens (23)
Murine hepatitis virus (1)
Macaca fascicularis (1)
Chlorocebus sabaeus (1)
Rattus norvegicus (1)
unidentified (1)

Repository

biostudies-arrayexpress (1432)
ENA (127)
geo (94)
pride (19)
jPOST (4)
EGA (3)
MassIVE (3)
MetaboLights (3)
dbGaP (1)
GPMDB (1)
iProX (1)

Tissue

Cell culture (7)
Brain (2)
Fibroblast (2)
Hepatocyte (2)
Epithelial cell (2)
Liver (2)
Pharyngeal mucosa (1)
Lymphoid cell (1)
Endosperm (1)
Flower bud (1)
Flower (1)
JURKAT cell (1)
Cerebrospinal fluid (1)
Cotyledon (1)
Egg (1)
Bone marrow (1)
Heart (1)
Cell suspension culture (1)
Blood plasma (1)
Stem cell (1)
Embryo (1)
Dendritic cell (1)
HeLa cell (1)
Leaf (1)
Primary cell (1)
Erythrocyte (1)
Permanent cell line cell (1)
Kidney (1)
Colon (1)

Disease

Normal (2)
Arrhythmias and right ventricular dysfunction (1)
DNA damage (1)
5 days post MHV infection (1)
Not Available (1)
Viral hepatitis (1)
Chronic neutrophilic leukemia (1)
Long COVID (1)
Liver cancer (1)
COVID-19 (1)

Technology Type

Mass Spectrometry (19)
Shotgun proteomics (7)
Affinity purification coupled with mass spectrometry proteomics (5)
Bottom-up proteomics (4)
Data-dependent acquisition (3)
Mass spectrometry assay (2)
SWATH MS (2)
Gel-based experiment (2)
Illumina HiSeq 2500 (ILLUMINA) (1)
Mass spectrometry (1)
Top-down proteomics (1)

Instrument Platform

NextSeq 500 (8)
Illumina HiSeq 2000 (4)
Illumina MiSeq (3)
Illumina HiSeq 2500 (3)
G2565AA DNA microarray scanner [Agilent] (2)
Illumina Genome Analyzer II (2)
Illumina NovaSeq 6000 (2)
Liquid Chromatography MS - positive - reverse phase (2)
Liquid Chromatography MS - negative - reverse phase (2)
NanoString nCounter (1)
Dell Precision Tower 7910 workstation (1)
Affymetrix GCS3000 7G SCANNER (1)
GeneChip Hybridization Oveer 640 (1)
Bio-Rad T100 Thermocycler (1)
Agilent 2100 Bioanalyzer, Applied Biosystems 7900HT Sequence Detection System, Illumina TruSeq Small RNA Sample Preparation Kit (1)
RNeasy mini Kit, Ribo-Zero Human/Mouse/Rat kit (1)
Agilent 2100 Bioanalyzer (1)
Instrument (1)
LTQ Orbitrap Elite (1)
Q Exactive HF-X (1)
Orbitrap Fusion Lumos (1)
MS Imaging - positive - direct infusion (1)
MS Imaging - (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)

Publication Date

2015 (239)
2010 (239)
2013 (213)
2014 (179)
2012 (166)
2011 (159)
2016 (67)
2008 (53)
2009 (48)
2007 (35)
2024 (21)
2021 (21)
2020 (17)
2026 (17)
2022 (16)
2023 (14)
2006 (10)
2019 (8)
2025 (8)
2017 (7)
2005 (5)
2004 (5)
2018 (4)
2003 (4)

CHEBI ID

CHEBI:170068 (1)
CHEBI:170066 (1)
CHEBI:138904 (1)
CHEBI:136198 (1)
CHEBI:132677 (1)
CHEBI:136247 (1)
CHEBI:145847 (1)
CHEBI: 136169 (1)
CHEBI:138521 (1)
CHEBI:89602 (1)
CHEBI:88906 (1)
CHEBI:89539 (1)
CHEBI:89536 (1)
CHEBI:171655 (1)
CHEBI:171654 (1)
CHEBI:171653 (1)
CHEBI:171652 (1)
CHEBI:171651 (1)
CHEBI:171650 (1)
CHEBI:171649 (1)
CHEBI:171648 (1)
CHEBI:171647 (1)
CHEBI:171646 (1)
CHEBI:171645 (1)
CHEBI:171644 (1)
CHEBI:171643 (1)
CHEBI:171642 (1)
CHEBI:171641 (1)
CHEBI:171640 (1)
CHEBI:171639 (1)

Metabolite Name

PE(18:1/0:0) (2)
N-Lactoylleucine (2)
Eplerenone (2)
L-Tryptophan (2)
CerP(d15:0/12:0) (1)
CerP(d15:0/10:0) (1)
PEp 38:4-A (1)
PE 40:6-B (1)
PE 38:6-A (1)
PG 38:5 (1)
PS 34:0 (1)
PS 40:2 (1)
PS 40:7 (1)
PEp 34:1 (1)
PEp 34:2 (1)
PEp 36:4 (1)
PEp 40:4 (1)
PEp 38:5-A (1)
PEp 38:3 (1)
PEp 38:1 (1)
PEp 36:5 (1)
PEp 40:7 (1)
PE 36:5-A (1)
PE 38:5-B (1)
PEp 40:6 (1)
PEp 36:1 (1)
PS 36:4 (1)
PEp 38:6 (1)
15Z-Tetracosenoic Acid (1)
13Z-Docosenoic Acid (1)

First Public Date

2026 (21)
2020 (20)
2024 (16)
2023 (15)
2014 (15)
2021 (11)
2025 (9)
2022 (8)
2017 (5)
2019 (4)
2018 (1)
2015 (1)
2013 (1)

Classification

viruses (1)

Study type

Transcription profiling by array (1054)
RNA-seq of coding RNA (189)
Unknown experiment type (38)
RNA-seq of non coding RNA (33)
ChIP-seq (18)
Comparative genomic hybridization by array (17)
Transcription profiling by SAGE (15)
Methylation profiling by array (14)
ChIP-chip by tiling array (13)
Other (12)
Transcription profiling by RT-PCR (7)
Genotyping by array (4)
Transcription profiling by tiling array (3)
Proteomic profiling by array (3)
Methylation profiling by high throughput sequencing (2)
Differential (1)
High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Proteomic profiling by mass spectrometer (1)
ChIP-chip by array (1)
Ribo-seq (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)

Release Date

2015 (278)
2010 (256)
2013 (235)
2014 (212)
2012 (190)
2011 (177)
2016 (118)
2021 (78)
2022 (71)
2008 (60)
2025 (59)
2009 (58)
2020 (55)
2024 (52)
2017 (50)
2007 (47)
2018 (45)
2023 (45)
2019 (43)
2006 (20)
2005 (14)
2003 (12)
2004 (11)
2001 (7)
1999 (6)
2026 (5)
2002 (4)
2000 (3)
1998 (1)
1992 (1)

Lab affiliation

State Key Laboratory of Virology and Hubei Province Key Laboratory of Allergy and Immunology, Institute of Medical Virology, TaiKang Center for Life and Medical Sciences, TaiKang Medical School, Wuhan University (1)
Department of Medicine, Department of Microbiology & Immunology, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA. (1)
Department of Microbiology and Immunology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore (1)
Medizinisches Proteom-Center Ruhr-University Bochum Bochum, Germany (1)
Analytical Biochemistry and Proteomics Unit, Institut Pasteur de Montevideo & Instituto de Investigaciones Biológicas Clemente Estable. (1)
Institute of Virology and Immunology IVI, Bern, Switzerland; Department of Infectious Diseases and Pathobiology, Vetsuisse Faculty, University of Bern, Bern, Switzerland (1)
Associate Professor, Department of Microbiology and Immunology (1)
Kyung Hee University (1)
BioMedizinisches Centrum Walter-Brendel-Zentrum für Experimentelle Medizin Ludwig-Maximilians-Universität München (1)
Centro de Referencia para Lactobacilos (CERELA)-CCT NOA Sur- CONICET (1)
Key Laboratory of Animal Production, Product Quality and Security, Ministry of Education, Key Laboratory of Animal Nutrition and Feed Science, Jilin Province, College of Animal Science and Technology, Jilin Agricultural University, Changchun, P. R. China 130118 (1)
University of Wrocław, Faculty of Biological Sciences (1)
Division of Hematology & Medical Oncology, Oregon Health & Science University, Portland, OR. (1)
School of Medicine, Shanghai University, Shanghai 200444, China. (1)
Baylor College of Medicine, Houston, Texas, 77030 (1)
UC San Francisco (1)
UCLA (1)
Institute of Virology and Immunology (IVI), Bern and Mittelhäusern, Switzerland Department of Infectious Diseases and Pathobiology (DIP), Vetsuisse Faculty, University of Bern, Bern, Switzerland (1)
Peking University (1)

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Generation and utilization of a monoclonal antibody against hepatitis B virus core protein for a comprehensive interactome analysis

Hepatitis B virus (HBV) core antigen (HBc) is a structural protein that forms the viral nucleocapsid and is involved in various steps of the viral replication cycle, but its role in the pathogenesis of HBV infection is still elusive. In this study, we generated a mouse monoclonal antibody against HB...

ORGANISM(S): Homo Sapiens (human)

2023-02-21 | PXD036961 | JPOST Repository

Transcription profiling of mouse fibroblast-like cells infected with mouse hepatitis virus

Effect of mouse hepatitis virus strain A59 replication on gene expression and mRNA stability in LR cells

ORGANISM(S): Mus musculus

2007-11-13 | E-MEXP-895 | biostudies-arrayexpress

Small tRNA-derived RNAs are increased and more abundant than microRNAs in chronic hepatitis B and C

Small, non-coding RNAs control gene expression post-transcriptionally and play important roles in virus-host interactions. Within the liver, the microRNA (miRNA) miR-122 is essential for replication of hepatitis C virus (HCV), while repression of miR-148a by hepatitis B virus (HBV) may enhance tumor...

ORGANISM(S): Homo sapiens

2014-12-18 | E-GEOD-57381 | biostudies-arrayexpress

Aberrant DNA methylation in hepatitis B and C virus-related hepatocellular carcinoma

Chronic infections by hepatitis B virus (HBV) and hepatitis C virus (HCV) appear to be the most significant causes of hepatocellular carcinoma (HCC). Aberrant promoter methylation is known to be deeply involved in cancer, including HCC. In this study, we analyzed aberrant promoter methylation on gen...

ORGANISM(S): Homo sapiens

2010-07-06 | E-GEOD-19665 | biostudies-arrayexpress

Transcription profiling of mouse fibroblasts infected with murine hepatitis virus using two array platforms to compare the potential for interference from viral RNA

Infection of cells with murine hepatitis virus strain A59 (MHV-A59) results in massive amounts of viral RNA within infected cells. When applying transcriptional profiling by means of microarray analysis, this could potentially cause problems since high amounts of viral RNA could in theory interfere ...

ORGANISM(S): Mus musculus

2008-05-21 | E-MEXP-1373 | biostudies-arrayexpress

HBV_HCV_mouse

Genome wide DNA methylation analysis using 20 human hepatocyte chimeric mice after hepatitis viral infection.

ORGANISM(S): Mus musculus

2014-01-03 | E-MTAB-1474 | biostudies-arrayexpress

Effect of Ribavirin on Viral Kinetics and Liver Gene Expression in Chronic Hepatitis C

Background/Aims: Ribavirin improves treatment response to pegylated-interferon (PEG-IFN) in chronic hepatitis C but the mechanism remains controversial. We studied correlates of response and mechanism of action of ribavirin in treatment of hepatitis C. Methods: 70 treatment-naïve patients were rand...

ORGANISM(S): Homo sapiens

2013-03-08 | E-GEOD-38663 | biostudies-arrayexpress

Gene expression profiles of NIH3T3 cells stably transfected with the plasmids encoding the wild type PreS/S gene or the nonsense mutant gene (sW182*) of HBV.

Background and Aims: Whether hepatitis B virus (HBV) could play a direct role in hepatocarcinogenesis remains uncertain. The 3' end nonsense mutations of HBV PreS/S gene have been found to encode transcriptional transactivation activity, suggesting these mutations may contribute to HBV-associated on...

ORGANISM(S): Mus musculus

2014-07-30 | E-GEOD-50180 | biostudies-arrayexpress

HCV_HBV

We perform genome wide methylation analysis using 33 clinical samples, which were obtained from patients who underwent surgical resection at the Aichi Cancer Center Hospital in accordance with institutional policies. The purpose of this experiment is revealing the methylation status affected by hepa...

ORGANISM(S): Homo sapiens

2014-01-03 | E-MTAB-1472 | biostudies-arrayexpress

JFH1-huh7.5.1

Genome wide DNA methylation analysis usig two individual huh7.5.1 after HCV-JFH1 infection

ORGANISM(S): Homo sapiens

2014-01-03 | E-MTAB-1473 | biostudies-arrayexpress

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