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TranscriptomicsHigh-throughput sequencing of small RNAs from different developmental stages of tomato fruits
Comparison of endogenous small RNA profiles from different developmental stages of tomato fruits Size fractionated small RNA from total RNA extracts was ligated to adaptors, purified again and reverse transcribed. After PCR amplification the sample was subjected to Solexa/Illumina high throughput py...
ORGANISM(S): Solanum lycopersicum 
2011-06-02 | E-GEOD-18110 | biostudies-arrayexpress
TranscriptomicsEndogenous short RNAs in Mucor circinelloides sequenced on the Illumina platform (Solexa)
We sequenced Endogenous short RNAs in Mucor circinelloides fungus grown in standard liquid culture. Short RNAs were profiled in wild type, Dicer-like 1 mutant (dcl1-), Dicer-like 2 mutant (dcl2-) and double Dicer mutant (dcl1-/dcl2-) strains. We identified many loci that produced less short RNAs in ...
ORGANISM(S): Mucor circinelloides 
2010-04-28 | E-GEOD-18958 | biostudies-arrayexpress
TranscriptomicsHigh-throughput sequencing of small RNAs in Medicago truncatula
Medicago truncatula endogenous small RNAs The dataset contains Medicago truncatula Gaertn. cv. Jemalong endogenous small RNA sequences in the range 18-28 nucleotides. High-throughput Solexa/Illumina sequencing was carried out at the Sainsbury Laboratory, Norwich, UK. Please see www.illumina.com for...
ORGANISM(S): Medicago truncatula 
2009-11-09 | E-GEOD-13761 | biostudies-arrayexpress
TranscriptomicsmicroRNA-target RNA pairs revealed by Parallel analysis of RNA ends in Vitis vinifera
Vitis vinifera RNA degradome Isolated polyadenylated RNA from total RNA extracts of Vitis vinifera leaves, were ligated to 5'-adapter that include san MmeI recognition site. The ligated products were purified again, reverse transcribed and cleaved with MmeI. The 5' fragments were purified from gel ...
ORGANISM(S): Vitis vinifera 
2010-04-29 | E-GEOD-18406 | biostudies-arrayexpress
TranscriptomicsHigh-throughput sequencing of small RNAs in Vitis vinifera
Vitis vinifera endogenous small RNAs Size fractionated small RNA from total RNA extracts of Vitis vinifera leaves, inflorescences, tendrils and small berries were ligated to adapters, purified again and reverse transcribed. After PCR amplification the sample was subjected to Solexa/Illumina high thr...
ORGANISM(S): Vitis vinifera 
2010-04-29 | E-GEOD-18405 | biostudies-arrayexpress
TranscriptomicsHigh-throughput sequencing of small RNAs in Heliconius melpomene
Background: Heliconius butterflies are an excellent model system for studies of adaptive convergent and divergent phenotypic traits. Wing colour patterns are used as signals to both predators and potential mates and are inherited in a Mendelian manner. The underlying genetic mechanisms of pattern fo...
ORGANISM(S): Heliconius melpomene melpomene 
2011-06-02 | E-GEOD-23292 | biostudies-arrayexpress
TranscriptomicsHigh-throughput pyrosequencing of endogenous small RNAs from Solanum lycopersicum leaf and fruit
Comparison of the endogenous small RNA content of tomato leaves and fruits. Size fractionated small RNA from total RNA extracts was ligated to adapters, purified again and reverse transcribed. After PCR amplification the sample was subjected to 454 high throughput pyrosequencing. Please see www.454...
ORGANISM(S): Solanum lycopersicum 
2008-08-21 | E-GEOD-12081 | biostudies-arrayexpress
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