Ms-proteomics - OmicsDI

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Proteomics (8836)
Unknown (3608)
Genomics (144)
Metabolomics (141)
Transcriptomics (77)
Other (52)
Multiomics (10)
Methylation profiling (2)
Genomic (1)

Organisms

Homo sapiens (403)
Mus musculus (112)
Rattus norvegicus (23)
Escherichia coli (19)
Rattus rattus (12)
Bos taurus (10)
Gallus gallus (9)
Saccharomyces cerevisiae (8)
Triticum aestivum (3)
Hordeum vulgare (2)
Bacillus subtilis subsp. subtilis str. 168 (2)
Sus scrofa (2)
Danio rerio (2)
Streptomyces iranensis (2)
Aeromonas hydrophila subsp. hydrophila ATCC 7966 (2)
Colinus virginianus (1)
Thermoplasma acidophilum DSM 1728 (1)
Burkholderia cenocepacia (1)
Apilactobacillus kunkeei (1)
Acidithiobacillus caldus (1)
Ruminiclostridium cellobioparum subsp. termitidis CT1112 (1)
Alteromonas macleodii (1)
Lactiplantibacillus plantarum WCFS1 (1)
Brassica rapa subsp. pekinensis (1)
Fragaria x ananassa (1)
Campylobacter jejuni (1)
Lactiplantibacillus plantarum (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (1)
Solanum lycopersicum (1)
Arabidopsis thaliana (1)

Organisms

Homo sapiens (34)
Mus musculus (28)
Hordeum vulgare (2)
Bos taurus (2)
Zea mays (2)
Arabidopsis thaliana (2)
Crotalinae (1)
Caprine alphaherpesvirus 1 (1)
Mycoplasmoides gallisepticum S6 (1)
Acidithiobacillus caldus (1)
Halobacterium salinarum (1)
Ruminiclostridium cellobioparum subsp. termitidis CT1112 (1)
Xanthomonas campestris (1)
Human adenovirus 7 (1)
Ureaplasma parvum serovar 3 (1)
Apilactobacillus kunkeei (1)
Lactiplantibacillus plantarum WCFS1 (1)
Brassica rapa subsp. pekinensis (1)
Alteromonas macleodii (1)
Oreochromis niloticus (1)
Fragaria x ananassa (1)
Campylobacter jejuni (1)
Bacillus pumilus (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (1)
Enterococcus faecium (1)
Gallus gallus (1)
Solanum lycopersicum (1)
Bacillus subtilis subsp. subtilis str. 168 (1)
Danio rerio (1)
Rattus norvegicus (1)

Repository

pride (7683)
MassIVE (487)
iProX (349)
jPOST (132)
MetaboLights (129)
ENA (128)
PeptideAtlas (72)
geo (64)
PanoramaPublic (55)
PAXDB (53)
GPMDB (48)
biostudies-arrayexpress (32)
GNPS (12)
EGA (3)
LINCS (3)
NODE (3)
ExpressionAtlas (1)
dbGaP (1)

Tissue

Cell culture (1499)
Brain (462)
Epithelial cell (458)
Blood plasma (346)
Liver (272)
Permanent cell line cell (243)
Blood (190)
Plant cell (177)
Heart (157)
Kidney (155)
Lung (155)
Blood serum (154)
Leaf (149)
Fibroblast (146)
Blood cell (131)
Whole body (116)
T cell (114)
Macrophage (106)
Cell suspension culture (105)
Colon (100)
Hepatocyte (90)
Skin (84)
B cell (79)
HeLa cell (75)
Others (14)
Plasma Non-glyco (14)
Breast (3)
Cell line (2)
Brain (2)
Urine (2)

Disease

Disease free (180)
Breast cancer (174)
Colon cancer (140)
Acute leukemia (78)
Cervix carcinoma (52)
Alzheimer's disease (51)
Not Available (48)
Cardiovascular system disease (48)
Prostate adenocarcinoma (48)
COVID-19 (39)
Malignant neoplasm of ovary (37)
Melanoma (37)
Type 2 diabetes mellitus (37)
Lung cancer (34)
Brain cancer (33)
Parkinson's disease (33)
Wounds and Injuries (27)
Lymphoma (26)
Pancreatic ductal adenocarcinoma (25)
Severe acute respiratory syndrome (25)
Glioblastoma (23)
Pancreatic cancer (21)
Multiple myeloma (20)
Amyotrophic lateral sclerosis (19)
Neuroblastoma (19)
Lung adenocarcinoma (18)
Multiple sclerosis (18)
Non-small cell lung carcinoma (18)
Obesity (16)
Triple-receptor negative breast cancer (3)

Technology Type

Mass Spectrometry (7683)
Shotgun proteomics (4061)
Bottom-up proteomics (1702)
Data-dependent acquisition (884)
SWATH MS (723)
Affinity purification coupled with mass spectrometry proteomics (716)
Data-independent acquisition (563)
Gel-based experiment (424)
Top-down proteomics (276)
Chemical cross-linking coupled with mass spectrometry proteomics (132)
SRM/MRM (128)
Mass spectrometry (107)
HDMSE (75)
DiaPASEF (62)
All-ion fragmentation (50)
MSE (35)
Affinity proteomics (21)
Mass spectrometry assay (17)
Mass spectrometry imaging (16)
Proteogenomics (14)
Metaproteomics (11)
Immunopeptidomics (9)
NMR spectroscopy (8)
RNA mass spectrometry (4)
Glycoproteomics (3)
PAcIFIC (3)
Mass spectrometry (1)
Shotgun-MS (1)
Gel-based quantification method (1)
Gel-free quantification method (1)

Instrument Platform

Q Exactive (91)
LTQ Orbitrap Velos (69)
Orbitrap Fusion Lumos (51)
Instrument (48)
Orbitrap Exploris 480 (40)
Orbitrap Eclipse (33)
LTQ Orbitrap (30)
Q Exactive Plus (29)
Orbitrap Fusion (29)
TripleTOF 5600 (27)
LTQ Orbitrap Elite (26)
Q Exactive HF (24)
Orbitrap Astral (21)
Q Exactive HF-X (20)
TimsTOF Pro (11)
Orbitrap Ascend (7)
Illumina HiSeq 2500 (6)
Exactive (Thermo Scientific) (5)
Illumina HiSeq 2000 (4)
5975C Series GC/MSD (Agilent) (2)
Xevo QTof MS (Waters) (2)
G2565BA DNA microarray scanner [Agilent] (1)
Illumina HiSeq X (1)
Illumina HiSeq 3000 (1)
6140 Quadrupole LC/MS (1)
6545 Q-TOF LC/MS (1)
Agilent 7890A GC coupled to a 5975C inert XL MSD (1)
In-house built IMS-MS with Agilent TOF MS (1)
Q-Exactive HF (1)
Q-Exactive Orbitrap (1)

Publication Date

2025 (1376)
2026 (1144)
2023 (1038)
2022 (1018)
2024 (1014)
2021 (826)
2020 (623)
2019 (498)
2018 (464)
2017 (289)
2016 (253)
2015 (212)
2014 (118)
2013 (90)
2012 (16)
2011 (15)
2008 (12)
2009 (10)
2010 (9)
2006 (2)
2005 (1)

UNIPROT ID/AC

9544.ENSMMUP00000000740 (19)
9544.ENSMMUP00000001377 (19)
9544.ENSMMUP00000001769 (19)
9544.ENSMMUP00000001915 (19)
9544.ENSMMUP00000002527 (19)
9544.ENSMMUP00000002781 (19)
9544.ENSMMUP00000003585 (19)
9544.ENSMMUP00000003611 (19)
9544.ENSMMUP00000004046 (19)
9544.ENSMMUP00000004823 (19)
9544.ENSMMUP00000005597 (19)
9544.ENSMMUP00000005753 (19)
9544.ENSMMUP00000005797 (19)
9544.ENSMMUP00000005910 (19)
9544.ENSMMUP00000006390 (19)
9544.ENSMMUP00000006423 (19)
9544.ENSMMUP00000007902 (19)
9544.ENSMMUP00000008373 (19)
9544.ENSMMUP00000008494 (19)
9544.ENSMMUP00000008956 (19)
9544.ENSMMUP00000009144 (19)
9544.ENSMMUP00000009462 (19)
9544.ENSMMUP00000009900 (19)
9544.ENSMMUP00000010357 (19)
9544.ENSMMUP00000010407 (19)
9544.ENSMMUP00000010774 (19)
9544.ENSMMUP00000010832 (19)
9544.ENSMMUP00000010920 (19)
9544.ENSMMUP00000011307 (19)
9544.ENSMMUP00000011868 (19)

ENSEMBL ID

ENSG00000170477 (28)
ENSG00000229353 (8)
ENSG00000147251 (7)
ENSG00000247315 (5)

CHEBI ID

CHEBI:30769 (36)
CHEBI:28044 (35)
CHEBI:16335 (33)
CHEBI:27897 (32)
CHEBI:28300 (31)
CHEBI:16811 (30)
CHEBI:15741 (30)
CHEBI:17596 (29)
CHEBI:16708 (28)
CHEBI:18237 (28)
CHEBI:16750 (28)
CHEBI:26271 (27)
CHEBI:6650 (27)
CHEBI:24898 (26)
CHEBI:25017 (26)
CHEBI:22660 (25)
CHEBI:18186 (25)
CHEBI:17568 (25)
CHEBI:7916 (25)
CHEBI:17509 (24)
CHEBI:18012 (24)
CHEBI:16027 (24)
CHEBI:15354 (24)
CHEBI:29016 (23)
CHEBI:18257 (23)
CHEBI:17822 (21)
CHEBI:27266 (21)
CHEBI:15891 (21)
CHEBI:32816 (21)
CHEBI:17750 (20)

Metabolite Name

Citric acid (16)
Uracil (14)
Adenosine (13)
Adenine (13)
Phenylalanine (12)
Valine (12)
Choline (12)
Creatine (12)
Inosine (12)
Tryptophan (11)
Proline (11)
Betaine (11)
Xanthine (11)
Uridine (11)
Hypoxanthine (11)
Adenine (10)
Glutamine (10)
Isoleucine (10)
Leucine (10)
Methionine (10)
Phenylalanine (10)
Dodecanoic acid (10)
Guanosine (10)
Creatinine (10)
L-Tyrosine (10)
Guanosine (9)
Xanthine (9)
Pyridoxine (9)
Succinic acid (9)
Asparagine (9)

First Public Date

2024 (20)
2025 (19)
2026 (13)
2023 (12)
2017 (12)
2019 (10)
2014 (10)
2022 (9)
2020 (8)
2021 (5)
2015 (3)
2013 (3)
2018 (2)
2016 (1)
2011 (1)

Classification

bacteria (4)
viruses (2)

Modification

15.994915 (29)
57.021464 (27)
4-tetrahydrothiazine-3-carboxylic acid (21)
2x(15)N labeled L-lysine (19)
4x(15)N labeled L-arginine (16)
42.010565 (12)
N6 (10)
N6-dimethyl-L-lysine (10)
Not available (10)
-17.026549 (8)
-18.010565 (4)
15.99491 (4)
57.02146 (4)
4x(2)H labeled dimethylated residue (3)
0.984 (2)
0.984016 (2)
3x(2)H labeled N6-acetyl-L-lysine (2)
58.005479 (2)
6x(2)H labeled dimethylated L-arginine (2)
71.037114 (2)
79.966331 (2)
127.063329 (1)
14.01565 (1)
15.977156 (1)
19.989829 (1)
227.126991 (1)
26.01565 (1)
27.994915 (1)
28.0313 (1)
3.994915 (1)

Study type

RNA-seq of coding RNA (16)
Transcription profiling by array (12)
Proteomic profiling by mass spectrometer (1)
MicroRNA profiling by high throughput sequencing (1)
RIP-seq (1)
ChIP-seq (1)

Release Date

2022 (363)
2025 (354)
2023 (327)
2021 (321)
2020 (305)
2024 (299)
2019 (244)
2018 (220)
2016 (183)
2017 (172)
2015 (165)
2014 (149)
2013 (120)
2012 (77)
2011 (68)
2009 (66)
2026 (63)
2010 (62)
2008 (29)
2007 (25)
2006 (15)
2005 (5)
2004 (4)
2003 (1)

Lab affiliation

University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (31)
Keck MS & Proteomics Resource Yale School of Medicine (20)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (16)
Michigan State University (16)
EDyP (14)
The University of Melbourne (14)
Head of Proteomics (12)
School of Life Sciences, Central China Normal University, Wuhan, Hubei province, China (12)
School of Chemistry and Molecular Biosciences, The University of Queensland, Australia (11)
USDA-ARS (11)
Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK (10)
NCI/NIH CSB (10)
University of Washington (10)
Centre for Proteome Research, University of Liverpool, Liverpool, UK (9)
Cornell University (9)
Institute of Molecular Systems Biology, Department of Biology, ETH Zurich, Zurich, Switzerland (9)
Aarhus University, Denmark (8)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (8)
Cambridge Institute for Medical Research, University of Cambridge (8)
Center for Neuroscience and Cell Biology – University of Coimbra (8)
Charles Perkins Centre, School of Medical Sciences, University of Sydney, Sydney, Australia. (8)
College of Animal Sciences, Zhejiang University, Hangzhou, P. R. China (8)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (8)
Pacific Northwest National Laboratory (8)
The University of Sydney (8)
University of Wisconsin-Madison (8)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (7)
Center for Structural Biology, Center for Cancer Research, National Cancer Institute (NCI), National Institutes of Health, Frederick, MD 21702-1201, USA (7)
Centre for Applied Pharmacokinetic Research, School of Health Sciences, The University of Manchester, UK (7)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada (7)

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An Integrated Biochemical, Proteomics, and Metabolomics Approach for Supporting Medicinal Value of Panax ginseng Fruits (GC-MS assay)

Panax ginseng roots are well known for their medicinal properties and have been used in Korean and Chinese traditional medicines for 1000s of years. However, the medicinal value of P. ginseng fruits remain poorly characterized. Using gas chromatography-time of flight mass spectrometry (GC-TOF MS), 6...

2016-11-18 | MTBLS350 | MetaboLights

MALDI imaging and LC-MS/MS-based fast, high-resolution spatial proteomics demonstrate cellular heterogeneity in situ

PRJNA1014120 | ENA

The Enzyme Effect: Broadening the Horizon of MS Optimization to Nontryptic Digestion in Proteomics.

Not available

S-EPMC11808764 | biostudies-literature

MALDI imaging and LC-MS/MS-based fast, high-resolution spatial proteomics demonstrate cellular heterogeneity in situ

Highly specialized cells are fundamental for proper functioning of complex organs. Variations in cell-type specific gene expression and protein composition have been linked to a variety of diseases. Although single cell technologies have emerged as valuable tools to address this cellular heterogenei...

ORGANISM(S): Mus musculus

2024-07-24 | GSE242688 | GEO

Screening for Expressed Nonribosomal Peptide Synthetases and Polyketide Synthases Using LC-MS/MS-Based Proteomics.

Not available

S-EPMC4777305 | biostudies-literature

MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data.

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Slice-PASEF: Maximising Ion Utilisation in LC-MS Proteomics.

Not available

S-EPMC12424990 | biostudies-literature

PepQuery2 democratizes public MS proteomics data for rapid peptide searching.