Muller A A - OmicsDI

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Unknown (16107)
Transcriptomics (293)
Genomics (161)
Proteomics (72)
Metabolomics (10)
Other (3)
Multiomics (2)
Models (1)
Methylation profiling (1)

Organisms

Homo sapiens (127)
Mus musculus (114)
Danio rerio (13)
Daphnia pulex (9)
Arabidopsis thaliana (9)
Saccharomyces cerevisiae (8)
Staphylococcus aureus (7)
Solanum lycopersicum (6)
Rattus norvegicus (6)
Drosophila melanogaster (5)
Zea mays (3)
Xenopus laevis (2)
Lepidium sativum (2)
Caenorhabditis elegans (2)
Teleopsis whitei (2)
Staphylococcus aureus subsp. aureus NCTC 8325 (1)
Staphylococcus aureus subsp. aureus str. Newman (1)
Tetrahymena thermophila (1)
Ambystoma mexicanum (1)
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Herbaspirillum seropedicae (1)
Chlorocebus sabaeus (1)
Nicotiana benthamiana (1)
Schizosaccharomyces pombe (1)
Anopheles gambiae (1)
Salmonella enterica subsp. enterica serovar Typhimurium (1)
Oryctolagus cuniculus (1)
Acinetobacter baumannii (1)
Canis lupus familiaris (1)
Escherichia coli (1)

Organisms

Mus musculus (55)
Homo sapiens (15)
Danio rerio (4)
Trypanosoma brucei brucei (3)
Staphylococcus aureus subsp. aureus str. JKD6008 (2)
Rattus norvegicus (2)
Saccharomyces cerevisiae (2)
Panorpa cognata (1)
Francisella tularensis subsp. tularensis SCHU S4 (1)
Drosophila elegans (1)
Planococcus kocurii (1)
Acinetobacter baumannii AB5075 (1)
Macaca fascicularis (1)
Streptococcus pneumoniae (1)
Drosophila virilis (1)
Acinetobacter baumannii (1)
Klebsiella pneumoniae (1)
Vitis vinifera (1)
Gallus gallus (1)

Repository

biostudies-arrayexpress (273)
ENA (128)
pride (69)
geo (39)
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MetaboLights (9)
MassIVE (2)
BioModels (1)
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GPMDB (1)
iProX (1)
jPOST (1)

Tissue

Cell culture (15)
Blood (4)
Retina (3)
Melanocyte (3)
Macrophage (3)
Embryo (3)
Epithelial cell (3)
B cell (3)
Muller cell (2)
Peripheral blood mononuclear cell (2)
Skin (2)
Leukocyte (2)
Blood serum (2)
Blood plasma (2)
HeLa cell (2)
Lung (2)
Liver (2)
Blood cell (2)
Mueller cell (1)
RMC-1 cell (1)
Mammary gland tumor cell (1)
Subcutaneous preadipocyte (1)
Lung neuroendocrine cell (1)
Small intestine epithelium (1)
Midgut (1)
Skin fibroblast (1)
Mammary gland (1)
Vitreous humor (1)
Pancreas (1)
Keratinocyte (1)

Disease

Normal (4)
Lymphoma (4)
Breast cancer (4)
ACUTE MYELOID LEUKEMIA (2)
Breast adenocarcinoma (2)
Malignant melanoma (2)
Chronic lymphocytic leukemia (2)
Adenocarcinoma (2)
Permanent neonatal diabetes mellitus (2)
Melanoma (2)
Disease free (2)
Breast Normal (1)
CHRONIC LYMPHOCYTIC LEUKEMIA (1)
NORMAL (1)
Uninfected 11dpi (1)
Embryonic lethal at day 8.5 to 9.5 (1)
Primary tumor (1)
TAC operated 1 hour after surgery (1)
Head and neck squamous cell carcinoma (1)
Osteosarcoma (1)
Acute myeloid leukemia (1)
Neuroblastoma (1)
Not Available (1)
Autoimmune uveitis (1)
Abnormal homeostasis (1)
Blindness (1)
Small cell carcinoma (1)
Ciliopathy (1)
Proliferative vitreoretinopathy (1)
Dilated cardiomyopathy (1)

Technology Type

Mass Spectrometry (69)
Shotgun proteomics (45)
Bottom-up proteomics (10)
SWATH MS (8)
Affinity purification coupled with mass spectrometry proteomics (8)
Mass spectrometry (6)
Gel-based experiment (5)
Data-independent acquisition (3)
Data-dependent acquisition (3)
Mass spectrometry assay (2)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
MSE (1)
SRM/MRM (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina HiSeq 4000 (13)
Illumina NovaSeq 6000 (9)
Illumina HiSeq 2000 (8)
NextSeq 500 (8)
Compute Cluster (4)
Genepix (4)
NextSeq 550 (4)
Illumina HiSeq 2500 (4)
G2565AA DNA microarray scanner [Agilent] (3)
ScanArray 4000XL [PerkinElmer] (2)
Ion Torrent Proton (2)
Illumina HiSeq 1500 (2)
Bruker maXis ESI Quadrupole TOF (2)
Axon GenePix 4000B scanner (1)
Qubit instrument, DNA HS kit (1)
High Sensitivity DNA kit (1)
BioRad SureCell (1)
Microcentrifuge (1)
Affymetrix (1)
SureScan Dx (1)
Unspecified (1)
ScanArray scanning hardware (1)
Other (1)
Axon- GenePix4000B (1)
G2565BA DNA microarray scanner [Agilent] (1)
GenePix 4000B [Axon Instruments] (1)
NextSeq 1000 (1)
Illumina HiSeq 3000 (1)
Instrument (1)
LTQ Orbitrap Elite (1)

Publication Date

2015 (35)
2013 (34)
2021 (32)
2010 (31)
2024 (27)
2012 (25)
2011 (25)
2016 (23)
2014 (20)
2009 (15)
2026 (15)
2025 (14)
2019 (14)
2007 (14)
2022 (13)
2020 (13)
2008 (13)
2018 (11)
2023 (9)
2006 (5)
2017 (3)
2005 (3)
2004 (2)

UNIPROT ID/AC

P05230 (1)
P11362 (1)
P15056 (1)
P04049 (1)
P28482 (1)

CHEBI ID

CHEBI:32816 (5)
CHEBI:26271 (4)
CHEBI:15978 (4)
CHEBI:18237 (4)
CHEBI:28757 (4)
CHEBI:24898 (4)
CHEBI:25017 (4)
CHEBI:17754 (4)
CHEBI:6650 (4)
CHEBI:28044 (4)
CHEBI:17568 (4)
CHEBI:16704 (4)
CHEBI:16199 (4)
CHEBI:30769 (4)
CHEBI:17992 (3)
CHEBI:16113 (3)
CHEBI:33508 (3)
CHEBI:17822 (3)
CHEBI:15611 (3)
CHEBI:25094 (3)
CHEBI:22660 (3)
CHEBI:48928 (3)
CHEBI:18186 (3)
CHEBI:37684 (3)
CHEBI:26986 (3)
CHEBI:16811 (3)
CHEBI:17234 (3)
CHEBI:18257 (3)
CHEBI:17752 (3)
CHEBI:15428 (3)

Metabolite Name

Leucine (3)
Glycerol (3)
Uracil (3)
3-Hydroxybutyric acid (3)
Fructose (3)
Proline (3)
Phenylalanine (3)
Isoleucine (3)
Uridine (3)
Sucrose (3)
Urea (3)
Glycerol-3-phosphoric acid (2)
4-Aminobutanoic acid (2)
Phosphoethanolamine (2)
Carbonic acid (2)
1,3-Diaminopropane (2)
Myo-Inositol (2)
Arabinose (2)
Pyridoxal (2)
Hexadecanoic acid (2)
Phosphoric acid (2)
Lyxose (2)
Beta-Alanine (2)
Glycine (2)
Phosphoenolpyruvic acid (2)
Glycolic acid (2)
Acetoacetate (2)
Valine (2)
Thymine (2)
6-Phosphogluconic acid (2)

First Public Date

2023 (22)
2026 (18)
2021 (14)
2019 (13)
2014 (13)
2025 (11)
2020 (11)
2024 (10)
2022 (8)
2017 (5)
2013 (2)
2015 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Research Unit Protein Science, Helmholtz Center Munich, German Research Center for Environmental Health GmbH, Germany (4)
Laboratoire de Spectrométrie de Masse BioOrganique (LSMBO), Université de Strasbourg,CNRS, IPHC UMR 7178, 67087 Strasbourg,France (3)
Laboratoire de Spectrométrie de Masse BioOrganique, Université de Strasbourg, CNRS, IPHC, UMR 7178, Strasbourg, France (2)
University of Edinburgh, Institute of Genetics and Molecular Medicine, Edinburgh, Scotland, United Kingdom, EH4 2XR (2)
Molecular Genetics, RPTU Kaiserslautern, Germany (2)
CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France (2)
University of Aberdeen School of Medicine, Medical Sciences and Nutrition Institute of Medical Sciences Foresterhill Aberdeen AB25 2ZD Scotland, United Kingdom (1)
Laboratoire de Spectrométrie de Masse BioOrganique (LSMBO), IPHC, Université de Strasbourg, CNRS UMR7178, Strasbourg, France (1)
Institute of Microbiology of the CAS, Czech Republic (1)
Core Facility Metabolomics and Proteomics, Helmholtz Center Munich, German Research Center for Environmental Health, Munich, Germany (1)
Durham University (1)
Fudan University, Huashan Hospital (1)
McGill University - Rosalind & Morris Goodman Cancer Institute (1)
Chair of Animal Physiology, Veterinary Sciences, LMU Munich, Germany (1)
School of Medicine, Medical Sciences and Nutrition Institute of Medical Sciences University of Aberdeen Foresterhill Aberdeen AB25 2ZD Scotland UK (1)
Department of Microbiology, Infectious Diseases and Immunology, Charité – Universitätsmedizin Berlin, Berlin, Germany (1)
Department of Human Health Sciences, University of Guelph, ON, Canada (1)
University of Aberdeen School of Medicine, Medical Sciences and Nutrition Institute of Medical Sciences, Foresterhill Aberdeen AB25 2ZD Scotland, United Kingdom (1)
Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), University of Cambridge, Cambridge, UK (1)
Medical Proteome Center Eberhard-Karls University of Tuebingen (1)
Department of Immunology Luxembourg Institute of Health Luxembourg (1)
Recamo, Masaryk Memorial Cancer Institute, Zluty kopec 7, Brno, 656 53 Czech Republic (1)
Eco-Systems Biology group, Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Luxembourg (1)
Laboratoire de Spectrométrie de Masse BioOrganique (LSMBO), Université de Strasbourg,CNRS, IPHC UMR 7178, 67087 Strasbourg, France (1)
Institute of Biology, Biosystem's adaptation laboratory,Irkutsk State University,Russia (1)
UMR 7178 - IPHC - CNRS - UdS - Laboratory of BioOrganic Mass Spectrometry - STRASBOURG, FRANCE (1)
Core Facility - High-Throughput Mass Spectrometry, Charité -Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin and Berlin Institute of Health (BIH), Berlin, Germany (1)
Luxembourg Centre for Systems Biomedicine (1)
Queensland Alliance for Agriculture and Food Innovation, University of Queensland (1)
Laboratoire de Génétique Médicale, INSERM, UMRS_1112, Institut de Génétique Médicale d'Alsace (IGMA), Université de Strasbourg Faculté de médecine de Strasbourg, 11 rue Humann, Strasbourg, France. Laboratoires de Diagnostic Génétique, Hôpitaux Universitaires de Strasbourg, Strasbourg, France. (1)

IsPrivate

False (1)

Classification

bacteria (7)
protozoa (3)

Study type

Transcription profiling by array (165)
RNA-seq of coding RNA (29)
RNA-seq of coding RNA from single cells (15)
MicroRNA profiling by array (10)
RNA-seq of non coding RNA (8)
ChIP-seq (6)
Transcription profiling by tiling array (4)
Methylation profiling by array (4)
Comparative genomic hybridization by array (3)
Methylation profiling by high throughput sequencing (3)
Animal - One-color microarray (2)
ChIP-chip by tiling array (2)
Plant - High-throughput sequencing (2)
Genotyping by array (2)
RIP-seq (2)
Unknown experiment type (1)
Tiling path by array (1)
Human - Single-cell sequencing (1)
Animal - High-throughput sequencing (1)
RNAi profiling by array (1)
ChIP-chip by array (1)
CLIP-seq (1)
Bisulfite-seq (1)
ATAC-seq (1)
Other (1)
Genotyping by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2022 (1759)
2023 (1660)
2021 (1599)
2025 (1509)
2024 (1327)
2020 (1276)
2019 (1050)
2018 (971)
2017 (786)
2016 (737)
2015 (672)
2014 (566)
2012 (407)
2013 (406)
2011 (311)
2010 (277)
2026 (250)
2009 (174)
2008 (171)
2007 (122)
2006 (93)
2005 (68)
2004 (44)
2003 (37)
2002 (31)
2001 (26)
2000 (18)
1999 (15)
1998 (12)
1997 (5)

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Differential expression in Muller glia of injured zebrafish in a mycb-/- context

PRJNA1047749 | ENA

Differential expression in Muller glia of injured zebrafish in a mych-/- context

PRJNA1047750 | ENA

PRDM15 is a master regulator of metabolism essential to sustain B-cell lymphomagenesis

PRDM family members are sequence-specific transcriptional regulators involved in cell identity and fate determination and are often dysregulated in cancer. The PRDM15 gene is of particular interest, given its relatively low expression in adult tissues and its overexpression in follicular lymphomas (...

2025-06-16 | MTBLS1639 | MetaboLights

RNA-seq to investigate the adult mouse Muller glia transcriptome

These data serve as a reference transcriptomic profile for adult mouse retinal Muller glia. Retinas were dissociated into single cell suspensions and sorted into two fractions: a Muller glia-enriched fraction on the basis of Muller glia-specific tdTomato expression and a second fraction containing t...

ORGANISM(S): Mus musculus

2020-08-02 | E-MTAB-7058 | biostudies-arrayexpress

A microfluidics-based in vitro model of the gastrointestinal human-microbe interface

Changes in the human gastrointestinal microbiome are associated with several diseases. To infer causality, experiments in representative models are essential, but widely used animal models exhibit limitations. Here we present a modular, microfluidics-based model (HuMiX, human–microbial crosstalk), w...

2017-07-28 | MTBLS328 | MetaboLights

Ciliary neurotrophic factor induces genes associated with inflammatory response and gliosis in the retina: A gene profiling study of flow-sorted, Muller (glial) cells

Our data suggest that CNTF remodels the transcription profile of Muller (glial) cells leading to induction of networks associated with transcription, cell cycle regulation and inflammatory response. CNTF also appears to function as an inducer of gliosis in the retina. These studies provide new insig...

ORGANISM(S): Mus musculus

2011-08-31 | E-GEOD-27195 | biostudies-arrayexpress

Determinants of divergent adaptation and Dobzhansky-Muller interaction in experimental yeast populations

Divergent adaptation can be associated with reproductive isolation in the process of speciation. We recently demonstrated the link between divergent adaptation and the onset of reproductive isolation in experimental populations of the yeast Saccharomyces cerevisiae evolved from a single progenitor ...

ORGANISM(S): Saccharomyces cerevisiae

2010-07-15 | E-GEOD-20943 | biostudies-arrayexpress

RNA-seq to investigate the adult mouse Muller glia transcriptome

PRJEB28255 | ENA

A multiplexed, single-cell sequencing screen identifies compounds that increase neurogenic reprogramming of mammalian Muller glia.

PRJNA1000634 | ENA

Differential expression in Muller glia of injured zebrafish in a mycb-/- context

This experiment studies retinal regeneration using a zebrafish model with a focus on Muller glia reprogramming.

ORGANISM(S): Danio rerio

2024-05-10 | GSE249116 | GEO