Multi-protein complexes

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Unknown (1086)
Proteomics (303)
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Genomics (195)
Other (14)
Metabolomics (6)
Models (2)
Methylation profiling (2)
Multiomics (2)

Organisms

Mus musculus (100)
Homo sapiens (90)
Saccharomyces cerevisiae (21)
Caenorhabditis elegans (20)
Drosophila melanogaster (18)
Escherichia coli (15)
Rattus norvegicus (13)
Arabidopsis thaliana (11)
Schizosaccharomyces pombe (5)
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Bombyx mori (4)
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Butyrivibrio proteoclasticus B316 (1)
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Dehalobacter restrictus (1)
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Pyrococcus furiosus (1)
Haemophilus influenzae (1)
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Oncorhynchus mykiss (1)
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Mycobacterium tuberculosis H37Rv (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Ceratopteris richardii (1)

Organisms

Homo sapiens (27)
Mus musculus (25)
Saccharomyces cerevisiae (9)
Drosophila melanogaster (7)
Arabidopsis thaliana (3)
Caenorhabditis elegans (2)
Escherichia coli (2)
Eoperipatus sp. (1)
Mycobacteroides abscessus ATCC 19977 (1)
Ceratopteris richardii (1)
Epiperipatus cf. barbadensis (1)
Saccharomyces cerevisiae W303 (1)
Plasmodium falciparum 3D7 (1)
Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10 (1)
Escherichia coli BW25113 (1)
Bacteroides thetaiotaomicron (1)
Escherichia coli K-12 (1)
Sus scrofa (1)
Toxoplasma gondii (1)

Repository

biostudies-arrayexpress (233)
pride (165)
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geo (76)
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PanoramaPublic (2)
PeptideAtlas (1)

Tissue

Cell culture (51)
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Permanent cell line cell (6)
Colon (6)
Plant cell (5)
Leaf (5)
B cell (5)
Embryonic stem cell (4)
SW-480 cell (3)
Colonic cancer cell line (3)
Heart (3)
Blood plasma (3)
HeLa cell (3)
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Liver (3)
Blood (3)
Ovary (2)
Stem cell (2)
Embryo (2)
Whole body (2)
Hepatocyte (2)
Compound eye (1)
Somatic cell (1)
CT-26 cell (1)
Neuron of the forebrain (1)
C2C12 cell (1)
Follicular cell of ovary (1)
Muscle cell (1)
Bone marrow-derived macrophage (1)

Disease

Colon cancer (8)
Disease free (7)
Not Available (4)
Lymphoma (4)
Breast cancer (3)
Plasmodium falciparum malaria (2)
Parkinson's disease (2)
Malignant neoplasm of ovary (2)
Pancreatic ductal adenocarcinoma (1)
Oligodendroglioma (1)
Multiple myeloma (1)
Combined oxidative phosphorylation deficiency (1)
Ciliopathy (1)
Cardiomyopathy (1)
Bone osteosarcoma (1)
Meningococcal meningitis (1)
Cervix carcinoma (1)
Alzheimer's disease (1)
Acute leukemia (1)

Technology Type

Mass Spectrometry (165)
Shotgun proteomics (86)
Affinity purification coupled with mass spectrometry proteomics (47)
Bottom-up proteomics (27)
Data-dependent acquisition (21)
Gel-based experiment (12)
Chemical cross-linking coupled with mass spectrometry proteomics (12)
Top-down proteomics (6)
SWATH MS (5)
Mass spectrometry (4)
HDMSE (3)
Mass spectrometry assay (2)
Immunopeptidomics (2)
MSE (2)
Data-independent acquisition (2)
Affinity proteomics (1)
All-ion fragmentation (1)

Instrument Platform

Illumina NovaSeq 6000 (6)
Instrument (4)
LTQ (4)
Orbitrap Fusion Lumos (4)
Q Exactive (4)
NextSeq 500 (3)
ScanArray 5000 [PerkinElmer] (2)
Illumina HiSeq 2000 (2)
Liquid Chromatography MS - positive - reverse-phase (2)
GeneChip Scanner 3000 [Affymetrix] (1)
Axon GenePix 4000B scanning hardware (1)
Illumina NovaSeq X (1)
BGISEQ-500 (1)
Illumina MiSeq (1)
TimsTOF Ultra (1)
QE-HF (1)
NanoACQUITY UPLC (1)
Synapt G2-S HDMS (1)
TripleTOF 5600+ (1)
TripleTOF 5600 (1)
TripleTOF 6600 (1)
Orbitrap Fusion (1)
Q Exactive HF (1)
LTQ Orbitrap (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2014 (74)
2013 (56)
2021 (52)
2015 (47)
2024 (43)
2025 (31)
2020 (30)
2026 (29)
2022 (28)
2011 (28)
2010 (27)
2019 (25)
2016 (25)
2012 (20)
2009 (20)
2023 (20)
2018 (19)
2017 (17)
2008 (10)
2007 (9)
2006 (5)
2004 (2)
2005 (1)
2003 (1)

UNIPROT ID/AC

A0A1D5QWS0_MACMU (16)
TPIS_MACMU (16)
I0FUX3_MACMU (16)
F7HRN7_MACMU (16)
Q8IZH2 (1)
Q96RS0 (1)
P62306 (1)
P62304 (1)
P62308 (1)
P62318 (1)
P62314 (1)
P14678 (1)
P62316 (1)
O14744 (1)
P52297 (1)
Q14974 (1)
P52292 (1)
Q16637 (1)
P43487 (1)
Q92973 (1)
Q9H814 (1)
O95149 (1)
O14980 (1)
P52298 (1)
Q09161 (1)
P08621 (1)
P09012 (1)
P09234 (1)
P60510 (1)
P62826 (1)

CHEBI ID

CHEBI:17256 (3)
CHEBI:15887 (3)
CHEBI:16750 (3)
CHEBI:18405 (3)
CHEBI:17154 (3)
CHEBI:17310 (3)
CHEBI:16335 (3)
CHEBI:16704 (3)
CHEBI:17596 (3)
CHEBI:17368 (3)
CHEBI:53013 (2)
CHEBI:74795 (2)
CHEBI:17768 (2)
CHEBI:27652 (2)
CHEBI:18335 (2)
CHEBI:137259 (2)
CHEBI:74072 (2)
CHEBI:18095 (2)
CHEBI:74327 (2)
CHEBI:73823 (2)
CHEBI:75003 (2)
CHEBI:16552 (2)
CHEBI:15918 (2)
CHEBI:75016 (2)
CHEBI:74035 (1)
CHEBI:84596 (1)
CHEBI:37565 (1)
CHEBI:58189 (1)
CHEBI:43474 (1)
CHEBI:15422 (1)

Metabolite Name

Guanosine (3)
Leu-Ala (2)
Adenosine 5'-monophosphate (2)
Adenosine (2)
Sarcosine (2)
Riboflavin (2)
L-Tryptophan (2)
L-Methionine (2)
L-Tyrosine (2)
Guanosine-5'-Monophosphate (5'GMP) (1)
Adenosine 3'-monophosphate (3'AMP) (1)
2-Deoxyadenosine 5-monophosphate (dAMP) (1)
Uridine 5'-monophosphate (5'UMP) (1)
Cytidine 3'-monophosphate (3'CMP) (1)
Cytidine 2':3'-Cyclic monophosphate (2', 3'-cCMP) (1)
Quercetin 3-O-glucoside 7-O-rhamnoside (1)
Kaempferol 3-O-glucoside 7-O-rhamnoside (1)
S-Adenosyl methionine (1)
4-[(2E)-3,7-dimethyl-5-oxoocta-2,6-dienyl]-3-methylideneoxolan-2-one (1)
Pyridoxamine-5'-phosphate (1)
4-hydroxy-4-[(E)-3-hydroxybut-1-enyl]-3,5,5-trimethylcyclohex-2-en-1-one (1)
(2E)-11-Hydroxy-2-dodecenoic acid (1)
N-epsilon,N-epsilon,N-epsilon-Trimethyllysine (1)
Alpha-aminopimelic acid (1)
N-Acetyl-L-ornithine (1)
Fenchyl alcohol (1)
Pyridoxol (1)
L-Methionine methylsulfonium (1)
N-(2-Hydroxyethyl)-beta-alanine (1)
Beta-Hydroxynorvaline (1)

First Public Date

2024 (18)
2025 (12)
2014 (12)
2021 (11)
2026 (10)
2019 (8)
2013 (8)
2022 (6)
2020 (6)
2015 (5)
2023 (4)
2018 (3)
2017 (3)
2016 (2)

Modelling Approach

Petri net (1)
Ordinary differential equation model (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (12)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (5)
Max Planck Institute of Immunobiology and Epigenetics Proteomics Unit Stuebeweg 51 79108 Freiburg Germany (4)
Medical Research Council Mitochondrial Biology Unit, University of Cambridge. U.K. (4)
Institute for Cardiovascular Regeneration, Centre for Molecular Medicine, Goethe University Frankfurt am Main, Germany (4)
Center for Molecular Biology of Heidelberg University (ZMBH), 69120 Heidelberg, Germany (2)
Chair, Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, USA (2)
School of Biosciences Firth Court, Western Bank University of Sheffield Sheffield, S10 2TN United Kingdom (2)
Molecular Biosciences and the Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX USA (2)
Donnelly CCBR, University of Toronto, Toronto ON M5S 3E1, Canada (2)
Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Canada (2)
Biochemistry and Molecular Biology Department, Eberly College of Science, Pennsylvania State University, University Park, PA, USA. (2)
Head of System Biology Lab. at Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency (2)
Research and Diagnostic Institute of Pathology, Medical University of Graz, Stiftingtalstrasse 6, 8010 Graz, Austria; Faculty of Technical Chemistry, Institute of Chemical Technologies and Analytics, Technische Universität Wien, Getreidemarkt 9/164, 1060 Vienna, Austria (2)
Department of Immunology, St. Jude Children's Research Hospital (1)
Institute of Integrative Biology, University of Liverpool, Liverpool, UK (1)
Radboud University Nijmegen (1)
Department of Physiological Sciences, University of Barcelona, IDIBELL, Spain (1)
Institute of Molecular Systems Biology D-BIOL ETH Zurich Switzerland (1)
Molecular and Cellular Biology Laboratory, Salk Institute for Biological Studies, La Jolla California 92037 USA (1)
European Institute of Oncology IRCSS, Department of Experimental Oncology, Milan, Italy (1)
Departmemnt of Pathology, University of Michigan (1)
Biology department, Washington Univeristy in St. Louis (1)
Department of Biological Chemistry and Molecular Pharmacology, Blavatnik Institute, Harvard Medical School, Boston, MA 02115, USA. 6Department of Cancer Biology, Dana Farber Cancer Institute, Boston, MA 02215, USA. (1)
Institute of Systems, Molecular and Integrative Biology University of Liverpool Liverpool L69 7ZB UK (1)
Turku Bioscience Centre, University of Turku and Åbo Akademi University, 20520 Turku, Finland Institute of Biomedicine, University of Turku, 20520 Turku, Finland (1)
Uppsala University, Uppsala, Sweden (1)
Borg AlArab Higher Institute of Engineering and Technology, New Borg AlArab City, Alexandria, Egypt (1)
Chair of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany Wellcome Trust Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, Scotland, United Kingdom (1)
University of Geneva, Faculty of Medicine, Protein Platform, Geneva, Switzerland (1)

IsPrivate

False (2)

Classification

bacteria (5)
protozoa (2)

Study type

Transcription profiling by array (85)
ChIP-seq (63)
RNA-seq of coding RNA (36)
ChIP-chip by tiling array (8)
Other (8)
RNA-seq of non coding RNA (7)
ChIP-chip by array (6)
Unknown experiment type (4)
Cell line - High-throughput sequencing (3)
Comparative genomic hybridization by array (3)
Transcription profiling by tiling array (2)
Methylation profiling by high throughput sequencing (2)
Animal - One-color microarray (1)
One-color microarray (1)
Cell line - One-color microarray (1)
MicroRNA profiling by array (1)
DNA-seq (1)
RNA-seq of total RNA (1)

Release Date

2022 (110)
2025 (109)
2021 (104)
2014 (99)
2023 (96)
2013 (82)
2024 (69)
2015 (69)
2020 (67)
2019 (65)
2017 (65)
2016 (63)
2011 (60)
2012 (55)
2010 (54)
2018 (51)
2009 (30)
2008 (21)
2007 (16)
2026 (14)
2006 (6)
2003 (4)
2005 (3)
2004 (2)
2000 (2)
1999 (1)

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Identification and analysis of multi-protein complexes in placenta.

Not available

S-EPMC3639281 | biostudies-literature

Multi-LZerD: multiple protein docking for asymmetric complexes.

Not available

S-EPMC3370124 | biostudies-literature

Pyrococcus furiosus crRNAs associated with Cmr, Csa and Cst CRISPR-Cas systems

CRISPR-Cas immune systems function to defend prokaryotes against potentially harmful mobile genetic elements including viruses and plasmids. The multiple CRISPR-Cas systems (Types I, II, III) each recognize and target destruction of foreign invader nucleic acids via structurally and functionally div...

ORGANISM(S): Pyrococcus furiosus

2015-07-10 | E-GEOD-65781 | biostudies-arrayexpress

Reconstitution of Multi-Protein Complexes through Ribozyme-Assisted Polycistronic Co-Expression.

Not available

S-EPMC9872166 | biostudies-literature

The Search Engine for Multi-Proteoform Complexes: An Online Tool for the Identification and Stoichiometry Determination of Protein Complexes.

Not available

S-EPMC5152683 | biostudies-literature

Dissecting Multi-protein Signaling Complexes by Bimolecular Complementation Affinity Purification (BiCAP).

Not available

S-EPMC6101743 | biostudies-literature

Isolation and characterization of multi-protein complexes enriched in the K-Cl co-transporter 2 from brain plasma membranes

Kcc2 plays a critical role in determining the efficacy of synaptic inhibition, however, the cellular mechanism neurons use to regulate its membrane trafficking, stability and activity are ill-defined. To address these issues, we used affinity purification to isolate stable multi-protein complexes of...

ORGANISM(S): Mus musculus (Mouse)

2020-10-22 | PXD021368 | Pride

A high-throughput immobilized bead screen for stable proteins and multi-protein complexes.

Not available

S-EPMC3118733 | biostudies-literature

A multi-network clustering method for detecting protein complexes from multiple heterogeneous networks.

Not available

S-EPMC5773919 | biostudies-literature

Over-expression and purification strategies for recombinant multi-protein oligomers: a case study of Mycobacterium tuberculosis σ/anti-σ factor protein complexes.

Not available

S-EPMC3068301 | biostudies-literature

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