Multi-tissue proteomics

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Proteomics (474)
Unknown (257)
Transcriptomics (85)
Genomics (80)
Metabolomics (30)
Other (10)
Genomic (1)

Organisms

Mus musculus (76)
Homo sapiens (68)
Rattus norvegicus (9)
Sus scrofa (3)
Danio rerio (2)
Schmidtea mediterranea (2)
Scutellaria baicalensis (2)
Escherichia coli (2)
Rattus rattus (2)
Arabidopsis thaliana (2)
cellular organisms (2)
Bacteroides cellulosilyticus (1)
Dorea longicatena DSM 13814 (1)
Colinus virginianus (1)
Macaca nemestrina (1)
Macaca fascicularis (1)
Bos taurus (1)
Triticum aestivum (1)
Cunninghamia lanceolata (1)
Oryctolagus cuniculus (1)
Drosophila melanogaster (1)
Cervus nippon (1)
Macaca fascicularis fascicularis (1)
Macaca mulatta (1)
Neurospora crassa OR74A (1)
Ovis (1)
Pelophylax nigromaculatus (1)
Trichuris sp. ex Macaca fascicularis JP-2011 (1)
Panonychus citri (1)
Tetranychus kanzawai (1)

Organisms

Homo sapiens (33)
Mus musculus (21)
Sus scrofa (2)
Schmidtea mediterranea (1)
skin metagenome (1)
Cunninghamia lanceolata (1)
Oryctolagus cuniculus (1)
Drosophila melanogaster (1)
Danio rerio (1)

Repository

pride (240)
MassIVE (111)
ENA (75)
iProX (60)
biostudies-arrayexpress (54)
geo (43)
PAXDB (34)
MetaboLights (29)
jPOST (17)
PanoramaPublic (8)
GPMDB (5)
EGA (2)
dbGaP (1)
GNPS (1)

Tissue

Liver (37)
Heart (36)
Brain (34)
Cell culture (20)
Lung (19)
Kidney (17)
Blood plasma (13)
Skeletal muscle (13)
Epithelial cell (11)
Colon (9)
Spleen (8)
Testis (8)
Adipose tissue (7)
White adipose tissue (7)
Embryo (6)
Midgut (6)
Whole body (6)
Fibroblast (5)
Plant cell (5)
T cell (5)
Blood serum (4)
Skin (4)
B cell (3)
Breast (3)
Brown adipose tissue (3)
Epididymal white adipose tissue (3)
Leg muscle (3)
Muscle (3)
Ovarian serous carcinoma cell (3)
Ovary (3)

Disease

Type 2 diabetes mellitus (6)
Not Available (5)
Brain glioblastoma multiforme (5)
Alzheimer's disease (4)
Colon cancer (4)
Breast cancer (3)
Malignant neoplasm of ovary (3)
Prostate adenocarcinoma (3)
Aortic valve stenosis (2)
Cardiomyopathy (2)
Cardiovascular system disease (2)
Colorectal cancer (2)
Disease free (2)
Infertility (2)
Lymphoma (2)
Neurofibromatosis 1 (2)
Parkinson's disease (2)
Colon cancer metastasis (1)
Arrhythmogenic right ventricular cardiomyopathy (1)
Arthritis (1)
Barth syndrome (1)
COVID-19 (1)
Congestive heart failure (1)
Cytochrome-c oxidase deficiency disease (1)
Diabetes mellitus (1)
Heart disease (1)
Hepatocellular carcinoma (1)
Inflammation (1)
Inflammatory bowel disease 7 (1)
Influenza (1)

Technology Type

Mass Spectrometry (240)
Shotgun proteomics (129)
Bottom-up proteomics (61)
Data-dependent acquisition (30)
Data-independent acquisition (28)
Mass spectrometry (19)
SWATH MS (14)
Affinity purification coupled with mass spectrometry proteomics (9)
Mass spectrometry assay (8)
Top-down proteomics (6)
Mass spectrometry imaging (5)
NMR spectroscopy (3)
Gel-based experiment (3)
DiaPASEF (2)
Immunopeptidomics (2)
All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
HDMSE (1)

Instrument Platform

Orbitrap Fusion Lumos (21)
Q Exactive (15)
Q Exactive HF (13)
LTQ Orbitrap Elite (8)
Q Exactive HF-X (7)
Q Exactive Plus (7)
Orbitrap Eclipse (6)
Orbitrap Exploris 480 (6)
TripleTOF 5600 (6)
Instrument (5)
LTQ Orbitrap Velos (5)
Orbitrap Fusion (4)
LTQ Orbitrap (3)
Illumina HiSeq 4000 (2)
7T solariX FT-ICR (2)
Impact II (2)
LTQ (2)
Orbitrap Ascend (2)
Orbitrap Astral (2)
Orbitrap Exploris 240 (2)
QExactive (2)
TimsTOF Pro 2 (2)
TimsTOF Ultra (2)
TripleTOF 6600 (2)
Affymetrix GeneChip Scanner 3000 7G (1)
Illumina HiSeq 2500 (1)
6470A Triple Quadrupole LC/MS (1)
6490 Triple Quadrupole LC/MS (1)
6510 Quadrupole Time-of-Flight LC/MS (1)
6520B Q-TOF LC/MS (1)

Publication Date

2025 (109)
2024 (71)
2026 (66)
2021 (59)
2022 (56)
2023 (52)
2020 (44)
2015 (25)
2019 (20)
2016 (20)
2018 (17)
2012 (10)
2014 (9)
2017 (9)
2013 (8)
2010 (6)
2011 (1)
2008 (1)
2005 (1)
2009 (1)

UNIPROT ID/AC

9544.ENSMMUP00000001915 (15)
9544.ENSMMUP00000014596 (15)
9544.ENSMMUP00000032006 (15)
9544.ENSMMUP00000033822 (15)
9544.ENSMMUP00000034864 (15)
A0A1D5Q0G5_MACMU (15)
A0A1D5Q3Q0_MACMU (15)
A0A1D5Q4H6_MACMU (15)
A0A1D5Q6G0_MACMU (15)
A0A1D5Q8I4_MACMU (15)
A0A1D5QD91_MACMU (15)
A0A1D5QFC1_MACMU (15)
A0A1D5QHM1_MACMU (15)
A0A1D5QLT3_MACMU (15)
A0A1D5QPK0_MACMU (15)
A0A1D5QQX5_MACMU (15)
A0A1D5QUV8_MACMU (15)
A0A1D5QWS0_MACMU (15)
A0A1D5QWX3_MACMU (15)
A0A1D5QZ63_MACMU (15)
A0A1D5R0N5_MACMU (15)
A0A1D5R1E0_MACMU (15)
A0A1D5R1P2_MACMU (15)
A0A1D5R3Q8_MACMU (15)
A0A1D5R480_MACMU (15)
A0A1D5R7W8_MACMU (15)
A0A1K0FU77_MACMU (15)
A0A5F7Z9R0_MACMU (15)
A0A5F7ZA21_MACMU (15)
A0A5F7ZM61_MACMU (15)

CHEBI ID

CHEBI:15428 (8)
CHEBI:32816 (7)
CHEBI:16977 (7)
CHEBI:18012 (7)
CHEBI:16027 (7)
CHEBI:17596 (7)
CHEBI:17368 (7)
CHEBI:16610 (6)
CHEBI:16857 (6)
CHEBI:15971 (6)
CHEBI:15741 (6)
CHEBI:15729 (6)
CHEBI:18019 (6)
CHEBI:16015 (6)
CHEBI:16750 (6)
CHEBI:17154 (6)
CHEBI:16737 (6)
CHEBI:16919 (6)
CHEBI:16414 (6)
CHEBI:17895 (6)
CHEBI:30769 (6)
CHEBI:16974 (5)
CHEBI:15901 (5)
CHEBI:17234 (5)
CHEBI:16708 (5)
CHEBI:28790 (5)
CHEBI:17561 (5)
CHEBI:16704 (5)
CHEBI:17750 (5)
CHEBI:18183 (5)

Metabolite Name

Glycine (5)
Adenine (5)
L-Valine (5)
L-Tyrosine (5)
Pyruvic acid (4)
Creatinine (4)
L-alanine (4)
L-Alanine (4)
Fumaric acid (4)
Thymine (4)
Piperidine (4)
Ornithine (4)
Choline (4)
Adenosine (4)
Histamine (4)
Glucose (4)
L-Serine (4)
Sucrose (4)
1,3-Diaminopropane (3)
D-Phenylalanine (3)
D-Fructose (3)
D-Threitol (3)
N-Acetyl-L-methionine (3)
L-Norleucine (3)
PC(34:2) (3)
L-ornithine (3)
L-leucine (3)
Indole-3-propionic acid (3)
Picolinic acid (3)
Beta-Alanine (3)

First Public Date

2025 (18)
2024 (14)
2023 (10)
2026 (9)
2022 (7)
2020 (6)
2021 (5)
2018 (2)
2016 (2)
2014 (2)

Modification

6-dioxaoctanediamine derivatized cysteine (1)

Study type

Transcription profiling by array (38)
RNA-seq of coding RNA (6)
Animal - One-color microarray (4)
Proteomic profiling by array (3)
Cell line - One-color microarray (1)
Animal - High-throughput sequencing (1)
Transcription profiling by RT-PCR (1)

Release Date

2025 (68)
2024 (33)
2023 (33)
2021 (28)
2022 (28)
2020 (20)
2018 (14)
2016 (13)
2014 (11)
2015 (10)
2026 (10)
2019 (9)
2013 (9)
2012 (9)
2010 (5)
2017 (5)
2011 (4)
2008 (1)
2005 (1)

Lab affiliation

Department of Entomology,Institute of Vegetables and Flowers,Chinese Academy of Agriculture Sciences,Beijing,100081,China (6)
Tokyo Metropolitan Institute of Medical Science (4)
Graduate Institute of Natural Products, Chang Gung University, Taoyuan, Taiwan (3)
Institute of Biochemistry ETHZ (3)
Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology (3)
The University of Sydney (3)
College of Chemistry and Molecular Engineering, Peking University, Beijing, China. (2)
Department of Biomedical Sciences, Affiliated with The Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen. (2)
Department of Chemical and Physical Sciences, University of Toronto Mississauga, Mississauga, Canada (2)
Department of Pharmacology University of North Carolina - Chapel Hill Chapel Hill, NC 27599 (2)
Department of Thoracic Surgery, First Affiliated Hospital of Kunming Medical University, Kunming 650000, Yunnan, China. (2)
Hebei Key Laboratory of Metabolic Diseases (2)
Institute of Clinical Pharmacology, Goethe-University, Frankfurt am Main, Germany (2)
Laboratory for Functional Genome Analysis (LAFUGA), Gene Center, LMU Munich, 81377 Munich, Germany (2)
Laboratory of Orthopedic Biomechanics, ETH Zurich (Department of Health Sciences and Technology) and University of Zurich (Medical Faculty) (2)
Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V. (2)
Systems Biology Ireland, University College Dublin (2)
The Institute of Cancer Research (2)
University of Missouri-Columbia (2)
"Institute of Biomedical and Pharmaceutical Sciences, Guangdong University of Technology, Guangzhou 510006, China" (1)
1) Department Preclinical Development and Validation, Fraunhofer Institute for Cell Therapy and Immunology IZI, Leipzig, Germany; 2) Institute for Bioanalysis, University of Applied Science Coburg, Coburg, Germany (1)
1Center for Medical Genetics, Ghent University Hospital, Ghent, 9000, Belgium 2Department of Biomolecular Medicine, Faculty of Medicine and Health Sciences, Ghent (1)
ARC Centre of Excellence in Synthetic Biology, School of Natural Sciences, Faculty of Science and Engineering, Macquarie University, North Ryde, Sydney, NSW 2109, Australia. (1)
AbbVie Bioresearch Center, Worcester, MA 01605, United States (1)
Albert Resnick, M.D. Associate Professor Head, Weslie R. and William H. Janeway Laboratory of Molecular Metabolism The Rockefeller University (1)
Animal Sciences Department, Ohio Sate University (1)
Ann Romney Center for Neurologic Diseases, Department of Neurology, Brigham and Women’s Hospital and Harvard Medical School, Boston, MA, USA (1)
Assistant Professor, Department of Ophthalmology, School of Medicine, Indiana University Indianapolis, IN, USA (1)
Associate Professor, Department of Medicine, Division of Endocrinology, Metabolism, and Nutrition, Department of Pharmacology and Cancer Biology Duke University Medical Center (1)
Ben-Gurion University (1)

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Multi-omic profiles of human nonalcoholic fatty liver disease tissue highlight heterogenic phenotypes

Non-alcoholic fatty liver disease (NAFLD) is a consequence of sedentary life style and high fat diets with an estimated prevalence of about 30% in western countries. It is associated with insulin resistance, obesity, glucose intolerance and drug toxicity. Additionally, polymorphisms in, e.g. APOC3, ...

2015-12-07 | MTBLS174 | MetaboLights

Integrated Multi-Omics Mapping of Mitochondrial Dysfunction and Substrate Preference in Barth Syndrome Cardiac Tissue

Barth syndrome (BTHS) is a rare X-linked recessively inherited disorder caused by variants in the TAFAZZIN gene. The pathogenic variants lead to impaired conversion of monolysocardiolipin (MLCL) into mature phospholipid cardiolipin (CL). The accumulation of MLCL and mature CL deficiency is a diag...

2025-09-08 | MTBLS12953 | MetaboLights

ProMetIS, deep phenotyping of mouse models by combined proteomics and metabolomics analysis

Genes are pleiotropic and getting a better knowledge of their function requires a comprehensive characterization of their mutants. Here, we generated multi-level data combining phenomic, proteomic and metabolomic acquisitions from plasma and liver tissues of two C57BL/6 N mouse models lacking the...

2021-09-01 | MTBLS1903 | MetaboLights

Multi-omics analysis of cocaine use disorder in postmortem brain tissue of the ventral striatum [Proteomics data to study EGAS50000000623]

We performed a multi-omics analysis of cocaine use disorder in postmortem human brain tissue of the ventral striatum in N=41 individuals (N=20 CUD cases, N=21 non-affected individuals). From the postmortem brain tissue samples, we generated miRNA-seq, RNA-seq, proteomics, and snRNA-seq data. The miR...

EGAS00001007945 | EGA

Kidney tissue pipeline for multi-omics and histological analysis

PRJNA999311 | ENA

Multi-tissue proteomics identifies a link between satellite DNA organization and heritable transposon repression in Drosophila

PRJNA1195069 | ENA

Proteomics analysis of insulin sensitive tissues in high fat diet fed mice

The popularity of high fat foods in modern society has been associated with epidemic of various metabolic diseases characterized by insulin resistance, the pathology of which involves complex interactions between multiple tissues such as liver, skeletal muscle and white adipose tissue (WAT). To unco...

ORGANISM(S): Mus musculus (Mouse)

2022-01-26 | PXD021046 | Pride

Laser Capture Proteomics: spatial tissue molecular profiling from the bench to personalized medicine.

Not available

S-EPMC10720974 | biostudies-literature

Dramatic expansion of the black widow toxin arsenal uncovered by multi-tissue transcriptomics and venom proteomics.

Not available

S-EPMC4058007 | biostudies-literature

VCP-HA mouse multi-tissue proteomics

VCP-HA mouse multi-tissue proteomics through swath-dia

ORGANISM(S): Mus Musculus

2026-06-11 | PXD071501 |

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937 Results

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