Multiplex - OmicsDI

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Unknown (14209)
Genomics (2044)
Transcriptomics (1117)
Proteomics (478)
Other (99)
Genomic (27)
Methylation profiling (27)
Metabolomics (13)
Multiomics (9)
Clinical (6)
Models (2)

Organisms

Homo sapiens (930)
Mus musculus (404)
Drosophila melanogaster (38)
Rattus norvegicus (34)
Arabidopsis thaliana (31)
Saccharomyces cerevisiae (24)
Bos taurus (11)
Sus scrofa (11)
Caenorhabditis elegans (10)
Gallus gallus (10)
Human papillomavirus (7)
Schizosaccharomyces pombe (7)
Danio rerio (7)
Saccharomyces cerevisiae S288C (4)
Solanum lycopersicum (4)
Cryptococcus neoformans (4)
Macaca nemestrina (4)
Brugia malayi (3)
Bombyx mori (3)
Zea mays (3)
Equus caballus (3)
Salmo salar (3)
Aedes albopictus (2)
Entamoeba invadens (2)
unidentified (2)
Macaca fascicularis (2)
Mycobacterium tuberculosis (2)
Aedes aegypti (2)
Heterocephalus glaber (2)
Rattus (1)

Organisms

Homo sapiens (511)
Mus musculus (214)
Xylella fastidiosa subsp. multiplex (25)
Clavibacter michiganensis subsp. michiganensis (21)
Rattus norvegicus (17)
Danio rerio (9)
Arabidopsis thaliana (9)
Sus scrofa (8)
Drosophila melanogaster (8)
Escherichia coli (8)
Xylella fastidiosa subsp. fastidiosa (6)
synthetic construct (6)
Bos taurus (6)
Pseudomonas fluorescens (5)
Macaca mulatta (5)
Saccharomyces cerevisiae (5)
Equus caballus (4)
Caenorhabditis elegans (4)
Oryza sativa (4)
Severe acute respiratory syndrome coronavirus 2 (4)
Bambusa multiplex (3)
Plasmodium falciparum (3)
Streptococcus pneumoniae (3)
Macaca nemestrina (3)
Gallus gallus (3)
human feces metagenome (3)
Bacteria (3)
Zea mays (3)
Xylella fastidiosa (3)
Cricetulus griseus (2)

Repository

ENA (1690)
biostudies-arrayexpress (908)
geo (598)
pride (360)
EGA (95)
MassIVE (51)
dbGaP (27)
PanoramaPublic (22)
iProX (19)
PeptideAtlas (12)
MetaboLights (8)
jPOST (6)
LINCS (6)
GNPS (5)
EVA (2)
BioModels (1)
Cell Collective (1)
PAXDB (1)

Tissue

Cell culture (64)
Brain (34)
Epithelial cell (34)
Blood plasma (15)
B cell (11)
Liver (11)
T cell (11)
Blood (11)
Lymph node (10)
Leaf (10)
Lung (10)
Fibroblast (9)
Heart (8)
Whole body (8)
Kidney (8)
Colon (8)
Macrophage (7)
Microglial cell (6)
Skin (6)
Plant cell (6)
Permanent cell line cell (6)
Blood cell (6)
Blood platelet (5)
Spleen (5)
Primary cell (5)
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Intestine (4)
Breast (4)
Leukocyte (4)
Blood serum (4)

Disease

Breast cancer (15)
Alzheimer's disease (7)
Malignant neoplasm of ovary (7)
Colon cancer (6)
Acute leukemia (6)
Disease free (5)
Lymphoma (4)
Cervix carcinoma (4)
Brain cancer (3)
Glioblastoma (3)
Amyotrophic lateral sclerosis (3)
COVID-19 (3)
Normal (2)
Malignant neoplasm of colon (2)
Oral squamous cell carcinoma (2)
Endometrial cancer (2)
Duchenne muscular dystrophy (2)
Atopic dermatitis (2)
Ovarian serous carcinoma (2)
Cardiovascular system disease (2)
Atherosclerosis (2)
Mitochondrial disease (1)
Adrenocortical Adenoma (1)
Locally advanced rectal cancer (1)
Adenoid cystic carcinoma (1)
Osteosarcoma (1)
Colorectal neoplasms malignant (1)
Rectal cancer (1)
Esophageal carcinoma (1)
Colorectal Neoplasms (1)

Technology Type

Mass Spectrometry (360)
Shotgun proteomics (234)
Bottom-up proteomics (68)
Data-dependent acquisition (29)
Data-independent acquisition (15)
Affinity purification coupled with mass spectrometry proteomics (15)
Top-down proteomics (13)
Gel-based experiment (9)
Chemical cross-linking coupled with mass spectrometry proteomics (8)
Mass spectrometry (7)
SWATH MS (7)
Fluorescence intensity (6)
SRM/MRM (6)
Illumina HiSeq 2000 (5)
Fluorescence imaging (5)
RPPA (4)
All-ion fragmentation (4)
Olink affinity proteomics (3)
ILLUMINA, Illumina HiSeq 2500 (2)
Affinity proteomics (2)
OXFORD_NANOPORE, MinION (1)
Illumina MiSeq, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500, HiSeq X Ten (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
Mass spectrometry imaging (1)
Immunopeptidomics (1)

Instrument Platform

NextSeq 500 (77)
Illumina NovaSeq 6000 (60)
Illumina HiSeq 2000 (50)
Illumina HiSeq 2500 (47)
Illumina HiSeq 4000 (39)
Illumina MiSeq (20)
NextSeq 550 (14)
NextSeq 2000 (10)
Illumina NovaSeq X (9)
Illumina HiSeq 3000 (6)
Illumina Genome Analyzer IIx (5)
Ion Torrent PGM (4)
Illumina Genome Analyzer II (3)
Illumina HiSeq 1500 (3)
Bio-Rad T100 Thermocycler (2)
General usage Laborartory equipment (2)
Lab Centrifuge (2)
Sequel (2)
Illumina MiniSeq (2)
DNBSEQ-G400 (2)
Dell Precision Tower 7910 workstation (1)
Affymetrix GCS3000 7G SCANNER (1)
GeneChip Hybridization Oveer 640 (1)
QSonica Q800R (1)
Lab Bench (1)
Sony MA-900 cell sorter (1)
STAR (1)
Single Cell/Low Input RNA Library Prep Kit for Illumina (#E6420S, New England Biolabs) (1)
RNA Micro Kit (Qiagen). (1)
HIVE computer cluster (1)

Publication Date

2026 (176)
2015 (167)
2025 (163)
2022 (161)
2014 (151)
2023 (150)
2024 (144)
2016 (123)
2020 (122)
2021 (118)
2019 (85)
2013 (82)
2017 (73)
2018 (70)
2012 (49)
2011 (48)
2010 (37)
2008 (21)
2009 (14)
2007 (9)
2006 (2)
2005 (1)
2002 (1)

UNIPROT ID/AC

F1891_HUMAN (1)
LNP1_HUMAN (1)
KCAB3_HUMAN (1)
CAC1A_HUMAN (1)
ZN814_HUMAN (1)
NCKX3_HUMAN (1)
IMP2L_HUMAN (1)
KIZ_HUMAN (1)
HPS4_HUMAN (1)
S45A4_HUMAN (1)
PTN5_HUMAN (1)
CAH7_HUMAN (1)
B4E171_HUMAN (1)
MEX3B_HUMAN (1)
ZCHC9_HUMAN (1)
SL9A5_HUMAN (1)
ARRS_HUMAN (1)
PCDB6_HUMAN (1)
CCG2_HUMAN (1)
CH034_HUMAN (1)
ABCA7_HUMAN (1)
NPY1R_HUMAN (1)
MFRN2_HUMAN (1)
SIG10_HUMAN (1)
DHRS9_HUMAN (1)
CHIN_HUMAN (1)
ELL3_HUMAN (1)
TYW3_HUMAN (1)
SLAI1_HUMAN (1)
ZNT3_HUMAN (1)

CHEBI ID

CHEBI:27226 (3)
CHEBI:18012 (3)
CHEBI:30769 (3)
CHEBI:16704 (3)
CHEBI:16335 (3)
CHEBI:17345 (3)
CHEBI:16856 (3)
CHEBI:15741 (3)
CHEBI:6650 (3)
CHEBI:30915 (3)
CHEBI:81221 (2)
CHEBI:49168 (2)
CHEBI:3927 (2)
CHEBI:9009 (2)
CHEBI:41941 (2)
CHEBI:167814 (2)
CHEBI:165341 (2)
CHEBI:89315 (2)
CHEBI:177850 (2)
CHEBI:157745 (2)
CHEBI:91218 (2)
CHEBI:27810 (2)
CHEBI:27584 (2)
CHEBI:17485 (2)
CHEBI:59270 (2)
CHEBI:456215 (2)
CHEBI:23053 (2)
CHEBI:545959 (2)
CHEBI:68503 (2)
CHEBI:15702 (2)

Metabolite Name

Adenosine (3)
Kukoamine B (2)
Isoguanosine (2)
Oxidized glutathione (2)
Phenylacetaldehyde (2)
Spermine (2)
Succinic acid (2)
Fumaric acid (2)
Cholic acid (2)
Docosahexaenoic acid (2)
Citric acid (2)
Histamine (2)
Uracil (2)
Adenine (2)
Guanine (2)
Niacinamide (2)
Creatine (2)
Choline (2)
Glutathione (2)
L-Isoleucine (2)
Uric acid (2)
Thymidine (2)
Inosine (2)
Uridine (2)
1-({(1s,4s,6s)-6-isopropyl-3-methyl-4-[2-(4-methyl-1-piperazinyl)-2-oxoethyl]-2-cyclohexen-1-yl}methyl)-3-(3-methoxyphenyl)urea (1)
N-({(2r,4s,5r)-5-[3-(3,4-dimethoxyphenyl)-1-methyl-1h-pyrazol-5-yl]-1-azabicyclo[2.2.2]oct-2-yl}methyl)-2-ethylbutanamide (1)
Diffractic acid (1)
6-o-[(2e)-3-(4-hydroxyphenyl)-2-propenoyl]-1-o-[(2e)-3-phenyl-2-propenoyl]-beta-d-glucopyranose (1)
4-methoxybenzaldehyde n-[6-(tert-butyl)thieno[3,2-d]pyrimidin-4-yl]hydrazone (1)
4-(4-chlorophenyl)-n-(2-pyridinylmethyl)cyclohexanecarboxamide (1)

First Public Date

2025 (213)
2024 (208)
2026 (190)
2022 (179)
2023 (151)
2021 (122)
2019 (115)
2020 (97)
2015 (83)
2018 (77)
2014 (75)
2017 (67)
2013 (63)
2016 (40)
2011 (7)
2012 (3)

Modelling Approach

Ordinary differential equation model (1)

Study status

Recruiting (4)
Ongoing (1)
Completed (1)

Lab affiliation

Institute of Cancer Research, London (5)
Shenzhen Second People’s Hospital, The First Affiliated Hospital of Shenzhen University, Shenzhen, China (4)
Director of Women’s Health Research Women’s Service Line Inova Health System (4)
Center for Structural Biology, Center for Cancer Research, National Cancer Institute (NCI), National Institutes of Health, Frederick, MD 21702-1201, USA (3)
The Institute of Cancer Research, London (3)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (3)
St. Jude Children's Research Hospital (3)
The Institute of Cancer Research (3)
Functional Proteomics, ICR (3)
Division of Cell Signalling and Immunology, University of Dundee, Dundee, UK. (2)
Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA (2)
Beijing Key Laboratory of Maize DNA Fingerprinting and Molecular Breeding, Maize Research Center, Beijing Academy of Agriculture and Forestry Sciences (BAAFS), Beijing, 100097, China (2)
Chair, Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, USA (2)
Department of Medical Biotechnology and Laboratory Science College of Medicine, Chang Gung University, Taoyuan, Taiwan (2)
1. Department of Microbiology and Immunology, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA. 2. Department of Epidemiology, Gillings School of Public Health, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA. 3. Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA (2)
Shenzhen People’s Hospital (2)
Department of Biochemistry and Molecular Biology; and Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, VIC 3010. Australia (2)
Division of Cell Signalling and Immunology, School of Life Sciences, University of Dundee, UK (2)
College of Animal Science and Technology, Yangzhou University, Yangzhou 225009, China (2)
School of Life Sciences, University of Dundee, Dundee, UK (2)
Medical University of Vienna (2)
Division of Molecular and Cellular Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD (2)
University of Wisconsin-Madison (2)
Laboratório de Pesquisa em Leishmanioses, Instituto Oswaldo Cruz, Fiocruz, Rio de Janeiro, RJ, Brasil (1)
Hopital Ophtalmique Jules-Gonin Group « Macular Degeneration and Diabetic Retinopathy » Av. de France 15 1002 Lausanne Switzerland (1)
Center for Integrative Genomics, University of Lausanne, Lausanne, Switzerland (1)
Max F. Perutz Laboratories, University of Vienna, Austria (1)
Massachusetts Institute of Technology, Koch Inistitute for Integrative Cancer Research, Department of Biological Engineering (1)
Radiation Signaling Group, Radiation Biology & Health Sciences Division, Bio-Science Group, Bhabha Atomic Research Centre (BARC), Mumbai - 400 085, India and Homi Bhabha National Institute (HBNI), Mumbai - 400 094, India (1)
Departments of Radiation Oncology, The University of Michigan Medical School, Ann Arbor, Michigan 48109. (1)

Keyword

Somatic quantitative molecular alterations (1)
Qantitative Multiplex Pcr of Short fluorescent Fragments method (QMPSF) (1)
Temozolomide (1)
Squamous cell carcinoma of the head and neck (1)
Liver cancer (1)
Stomach cancer (1)

IsPrivate

False (1)

Classification

bacteria (37)
protozoa (7)
viruses (7)
fungi (2)

Modification

-18.010565 (1)
-17.026549 (1)
42.010565 (1)
15.994915 (1)
N6 (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)

Study type

RNA-seq of coding RNA (245)
ChIP-seq (150)
Transcription profiling by array (145)
RNA-seq of non coding RNA (67)
RNA-seq of coding RNA from single cells (59)
Other (27)
MicroRNA profiling by high throughput sequencing (23)
DNA-seq (23)
Methylation profiling by high throughput sequencing (21)
Comparative genomic hybridization by array (17)
Genotyping by array (12)
Cell line - High-throughput sequencing (11)
Methylation profiling by array (10)
RNA-seq of total RNA (10)
Transcription profiling by RT-PCR (8)
Unknown experiment type (7)
Human - High-throughput sequencing (5)
Genotyping by high throughput sequencing (5)
Baseline (4)
MicroRNA profiling by high-throughput sequencing (4)
Animal - Single-cell sequencing (4)
Animal - High-throughput sequencing (4)
RIP-seq (4)
Proteomic profiling by array (4)
MNase-seq (3)
MeDIP-seq (3)
Human - Single-cell sequencing (3)
Hi-C (3)
CUT&RUN (3)
Plant - High-throughput sequencing (2)

Release Date

2025 (1632)
2022 (1591)
2023 (1517)
2021 (1485)
2024 (1272)
2020 (1200)
2019 (926)
2018 (777)
2016 (678)
2015 (664)
2017 (641)
2014 (578)
2013 (381)
2012 (322)
2011 (256)
2026 (230)
2010 (207)
2009 (150)
2008 (119)
2007 (113)
2005 (71)
2006 (66)
2004 (55)
2003 (54)
2002 (40)
2001 (32)
2000 (29)
1999 (12)
1998 (10)
1997 (1)

Location

Germany (2)
Chile (1)
China (1)
Italy (1)
France (1)

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Mucor multiplex strain:CBS 110662

Mucor multiplex CBS 110662 Genome sequencing and assembly

PRJNA1105195 | ENA

Xylaria multiplex strain:DSM 110363

Xylaria multiplex strain:DSM 110363 Genome sequencing and assembly

PRJNA596119 | ENA

Bambusa multiplex

Bambusa multiplex overview

PRJNA399780 | ENA

A Robust Multiplex-DIA Workflow Profiles Protein Turnover Regulations Associated with Cisplatin Resistance and Aneuploidy

Measuring protein turnover is essential for understanding cellular biological processes and advancing drug discovery. The multiplex-DIA mass spectrometry (DIA-MS) approach, combined with dynamic SILAC labeling (pulse-SILAC, or pSILAC), has proven to be a reliable method for analyzing protein turnove...

ORGANISM(S): Homo sapiens (Human)

2025-05-14 | PXD057632 | Pride