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GenomicsNanoscale Chromatin Profiling of Gastric Adenocarcinoma
To identify chromatin alterations in primary gastric adenocarcionomas, we performed nano-scale chromatin immunoprecipitation-sequencing (Nano-CHiPseq) of histone modifications in 5 gastric cancers and matched normal tissues, We identified hundreds of somatically-altered promoters (marked by H3K4me3)...
ORGANISM(S): Homo sapiens 
2014-07-30 | E-GEOD-51776 | biostudies-arrayexpress
GenomicsHistone acetylation H2BK20ac marks cell-state specific active regulatory elements
Characterisation of different histone modifications is crucial to understand gene regulation. In order to study the most predictive histone modification for active enhancers we created unbiased set of enhancers and used machine learning approach. Our approach revealed an unconventional histone modif...
ORGANISM(S): Homo sapiens 
2016-02-25 | E-GEOD-72886 | biostudies-arrayexpress
GenomicsUniform optimal framework for integrative next-gen sequence analysis
Here, we have collapsed multiple analysis problems into two coherent categories, signal detection and signal estimation and adapted linear-optimal solutions from signal processing theory. Our algorithms for detection (DFilter) and estimation (EFilter) extend naturally to integration of multiple data...
ORGANISM(S): Mus musculus 
2013-06-10 | E-GEOD-34073 | biostudies-arrayexpress
ProteomicsPhosphoproteome of mouse pancreatic beta cell
TMT-labeled phosphoproteome data of mouse pancreatic beta cell
ORGANISM(S): Mus Musculus (mouse) 
2021-05-11 | PXD022745 | JPOST Repository
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