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TranscriptomicsMECP2 ChIP-chip and MeDIP-chip experiments
Comparison of MYCN and MECP2 genome wide binding sites in the neuroblastoma genome
ORGANISM(S): Homo sapiens 
2012-04-05 | E-MTAB-621 | biostudies-arrayexpress
TranscriptomicsBaseline expression from transcriptional profiling of zebrafish developmental stages
Establish baseline expression transcriptional signatures for zebrafish developmental stages. Total RNA was extracted from single wild type zebrafish embryos at a series of different developmental stages. RNA from 12 embryos was pooled to generate a replicate.The RNA was DNase treated. Stranded RNAs...
ORGANISM(S): Danio rerio 
2016-06-12 | E-ERAD-475 | biostudies-arrayexpress
TranscriptomicsRNA-sequencing TS23 humerus and associated joints
RNA-sequencing profiling analysis was performed on TS23 humerus tissue from control mice(splotch-delayed). The purpose of this profiling analysis was to identify the transcriptome and expression profile of the developing humerus rudiment and associated joints at embryonic theiler stage 23 (E14.5) du...
ORGANISM(S): Mus musculus 
2014-01-23 | E-MTAB-1745 | biostudies-arrayexpress
TranscriptomicsRNA-sequencing DE Spd (humerus)
RNA-sequencing profiling analysis was performed on TS23 humerus tissue from muscle-less mutant (splotch-delayed) mice and compared to control littermates. The purpose of this profiling analysis was to identify differentially expressed genes between muscle-less and control embryonic (TS23) humerus ti...
ORGANISM(S): Mus musculus 
2014-01-23 | E-MTAB-1746 | biostudies-arrayexpress
TranscriptomicsSingle cell ATAC-seq of iPSC-derived Kidney Organoids treated with TGF-Beta 1 and GSK343 compared with vehicle treated control
This study used snATAC-seq to profile Chromatin accessibility in 26 day-old iPSC-derived kidney organoids, treated with TGFB1, the EzH2 inhibitor GSK343, a combination of both or a vehicle control for 48 hours (days 24-26) before harvesting. 2 organoids per condition were pooled and dissociated usin...
ORGANISM(S): Homo sapiens 
2023-04-30 | E-MTAB-11139 | biostudies-arrayexpress
TranscriptomicsSingle cell RNA-seq of iPSC-derived Kidney Organoids treated with TGF-Beta 1 and GSK343 compared with vehicle treated control
This study used scRNA-seq to characterise the transcriptome in 26 day-old iPSC-derived kidney organoids, treated with TGFB1, the EzH2 inhibitor GSK343, a combination of both or a vehicle control for 48 hours (days 24-26) before harvesting. 2 organoids per condition were pooled and dissociated using ...
ORGANISM(S): Homo sapiens 
2023-04-30 | E-MTAB-11138 | biostudies-arrayexpress
Genomicsena-DATASET-JHU-29-06-2015-20:17:30:536-212 - samples
Clinical Implications of Genomic Alterations in the Tumour and Circulation of Pancreatic Cancer Patients
EGAD00001001421 | EGA
GenomicsClinical Implications of Genomic Alterations in the Tumor and Circulation of Pancreatic Cancer Patients
Pancreatic adenocarcinoma has the worst mortality of any solid cancer. To evaluate the clinical implications of genomic alterations in this tumor type, we performed whole-exome analyses of 24 tumors, targeted genomic analyses of 77 tumors, and used non-invasive approaches to examine tumor-specific ...
EGAS00001001257 | EGA
GenomicsPancreatic Adenocarcinoma Data Access Committee
Data Access Committee EGAC00001000358
EGAC00001000358 | EGA
Genomicsena-DATASET-JHU-SOM-01-09-2017-17:11:13:045-143 - samples
The dataset for Direct Detection of Early-Stage Cancers using Circulating Tumor DNA includes 602 bam files from next-generation sequencing on the Illumina HiSeq2500 or MiSeq. The samples analyzed include cancer cell lines as well as plasma and tissue specimens from healthy individuals and patients ...
EGAD00001003601 | EGA
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