Mushrooms - OmicsDI

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Unknown (1031)
Genomics (146)
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Proteomics (21)
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Organisms

Andropogon gerardi (15)
Bacteria (15)
Canis lupus familiaris (15)
Cnidaria (15)
Ensifer adhaerens (15)
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Fasciola (15)
Hepatitis B virus (15)
Human alphaherpesvirus 1 strain 17 (15)
Human alphaherpesvirus 1 strain KOS (15)
Human betaherpesvirus 5 (15)
Human herpesvirus 2 strain 186 (15)
Madurella mycetomatis (15)
Coprinopsis cinerea (11)
Schizophyllum commune (9)
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Homo sapiens (2)
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Morchella sextelata (1)

Organisms

Schizophyllum commune (5)
Agaricus bisporus (4)
Coprinopsis cinerea (3)
Pleurotus tuoliensis (2)
soil metagenome (2)
Umbelopsis nana (1)
Pseudomonas tolaasii 6264 (1)
Pseudomonas tolaasii PMS117 (1)
Amanita polypyramis BW_CC (1)
Streptomyces sp. 150FB (1)
Lentinula detonsa (1)
Lentinula aff. detonsa (1)
Amanita muscaria var. guessowii Koide BX008 (1)
Pseudomonas gingeri NCPPB 3146 = LMG 5327 (1)
Lentinula novae-zelandiae (1)
Agaricus bisporus var. bisporus (1)
Trichoderma pleuroti (1)
Pseudomonas agarici (1)
Moniliophthora roreri (1)
Pholiota microspora (1)
Tremella mesenterica (1)
Lentinula lateritia (1)
Trametes sanguinea (1)
Pseudomonas sp. A014 (1)
Volvariella volvacea (1)
Tolypocladium ophioglossoides (1)
Dikarya (1)
Pleurotus citrinopileatus (1)
Nocardiopsis yanglingensis (1)
Phanerodontia chrysosporium (1)

Repository

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biostudies-arrayexpress (21)
geo (16)
pride (15)
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Tissue

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Disease

Colon cancer (1)

Technology Type

Mass Spectrometry (15)
Shotgun proteomics (10)
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Gel-based experiment (1)
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Instrument Platform

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Illumina HiSeq 2000 (2)
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5975C Series GC/MSD (Agilent) (1)
Liquid Chromatography MS - negative - HILIC (1)
Liquid Chromatography MS - positive - HILIC (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2012 (9)
2025 (8)
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2015 (7)
2024 (5)
2020 (5)
2014 (4)
2010 (4)
2021 (4)
2016 (3)
2013 (3)
2023 (3)
2026 (3)
2018 (2)
2019 (2)
2009 (1)
2017 (1)

CHEBI ID

CHEBI:30746 (2)
CHEBI:24846 (1)
CHEBI:89628 (1)
CHEBI:235367 (1)
CHEBI:235356 (1)
CHEBI:235355 (1)
CHEBI:235354 (1)
CHEBI:235353 (1)
CHEBI:235363 (1)
CHEBI:235365 (1)
CHEBI:235366 (1)
CHEBI:235360 (1)
CHEBI:235359 (1)
CHEBI:235352 (1)
CHEBI:235362 (1)
CHEBI:190910 (1)
CHEBI:233523 (1)
CHEBI:176353 (1)
CHEBI:235358 (1)
CHEBI:233485 (1)
CHEBI:235357 (1)
CHEBI:235351 (1)
CHEBI:235361 (1)
CHEBI:235350 (1)
CHEBI:235364 (1)
CHEBI:210317 (1)
CHEBI:181117 (1)
CHEBI:167540 (1)
CHEBI:167992 (1)
CHEBI:66955 (1)

Metabolite Name

Esculetin (2)
N-Acetyl Mesalazine (2)
Prunin (2)
Gly-Tyr (2)
3-Methoxytyramine (2)
Hydroxytyrosol (2)
Daidzin (2)
Catechol (2)
4-Methoxycinnamic acid (2)
Hydroquinone (2)
Asp-Phe (2)
L-Asparagine (2)
Gamma-Glu-Leu (2)
Biochanin A (2)
5-Phenylvaleric Acid (2)
Guanine (2)
Tetrahydrocorticosterone (2)
Riboflavin (2)
L-Tryptophan (2)
Guanosine (2)
Inosine (2)
3-hydroxypentanoic acid (1)
Vanillic acid-glucoside (1)
Urolithin M5 (1)
Trihydroxyflavone (1)
Taxifolin / Dihydroquercetin (1)
Salicylic acid-glucoside (1)
Quercetin-3-O-glucosyl-6''-acetate (1)
Quercetin 3-O-rhamnosyl-rhamnosyl-glucoside (1)
Protocatechuic acid / 3,5-Dihydroxybenzoic acid (1)

First Public Date

2025 (24)
2026 (20)
2024 (16)
2013 (15)
2020 (11)
2023 (10)
2022 (9)
2014 (9)
2021 (8)
2017 (6)
2019 (5)
2015 (5)
2018 (4)
2016 (4)

Classification

bacteria (1)

Study type

Transcription profiling by array (9)
RNA-seq of coding RNA (9)
Transcription profiling by SAGE (2)
Transcription profiling by tiling array (1)

Release Date

2022 (155)
2023 (145)
2025 (130)
2021 (121)
2024 (118)
2020 (86)
2019 (53)
2018 (47)
2017 (36)
2015 (31)
2016 (28)
2014 (22)
2026 (20)
2012 (16)
2013 (15)
2010 (6)
2009 (5)
2008 (5)
2011 (4)
2007 (3)
2006 (2)
2005 (1)
2001 (1)
1998 (1)
1997 (1)

Lab affiliation

Shandong Provincial Key Laboratory of Applied Mycology, College of Life Sciences, Qingdao Agricultural University, China (2)
College of Life Science, Fujian Agriculture and Forestry University (1)
Department for Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology, Hans Knöll Institute, Leibniz-HKI, Jena (1)
ETH Zürich, Department of Biology, Institute of Microbiology, Vladimir-Prelog-Weg 4, CH-8093 Zürich, Switzerland (1)
Fungal Physiology, CBS-KNAW Fungal Biodiversity Centre & Fungal Molecular Physiology, Utrecht University, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands (1)
Industrial Biotechnology & Biocatalysis Group, Biotechnology Laboratory, School of Chemical Engineering, National Technical University of Athens, Athens, Greece (1)
Key Laboratory of Insect Developmental and Evolutionary Biology, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200032, China (1)
Lab PI (1)
Medical Mycology Laboratory, Biology department, Maynooth University, Co. Kildare, Ireland (1)
Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology, Hans Knöll Institute (Leibniz-HKI), Jena, Germany (1)
PTM-Biolabs (1)
Qingdao Agricultural University (1)
Shandong Province Key Laboratory of Applied Mycology, College of Life Sciences, Qingdao Agricultural University, Changcheng Road, No.700, Qingdao, 266109, China (1)
VetMedZg Laboratory,Faculty of Veterinary Medicine, University of Zagreb, Zagreb, Croatia Institute of Biodiversity, Animal Health & Comparative Medicine, College of Medicine, Veterinary Medicine and Life Sciences, University of Glasgow, Glasgow, UK (1)

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Polyphenolic Profiling of Plants and Edible Mushrooms to Aid Characterizing Polyphenol Oxidase Selectivity

Polyphenol oxidases are important metalloenzymes that catalyze the oxidation of polyphenols. Organisms can contain multiple isoenzymes whose possible different functionality is not understood. Moreover, their substrate preference is still unexplored, and a working hypothesis assumes their specifi...

2025-08-07 | MTBLS8782 | MetaboLights

Mushroom development in S. commune

In order to study changes in gene expression during mushroom development in Schizophyllum commune, genome wide gene expression was analysed in 4 developmental stages: vegetative mycelium, stage I aggregates, stage II primordia and mature mushrooms 4 samples: - vegetative mycelium - stage I aggregate...

ORGANISM(S): Schizophyllum commune

2010-06-28 | E-GEOD-21265 | biostudies-arrayexpress

The Nutritional Benefit of UV-Exposed Mushrooms for the Dutch Population: Modeling the Addition of UV-Exposed Mushrooms to the Diet.

Not available

S-EPMC10756956 | biostudies-literature

Genome-wide expression analysis of dikaryotic colonies of Schizophyllum commune: wild-type, delta-hom2, delta-fst4

The transcription factors Hom2 and Fst4 were shown to be involved in mushroom development in the basidiomycete Schizophyllum commune. When the genes encoding Hom2 or Fst4 were deleted, no mushrooms formed. In this study we performed a genome-wide expression analysis on dikaryons of wild-type, delta-...

ORGANISM(S): Schizophyllum commune

2012-01-20 | E-GEOD-23594 | biostudies-arrayexpress

Uncovering the abilities of Agaricus bisporus to degrade plant biomass throughout its life cycle

The common edible mushroom Agaricus bisporus is a basidiomycete that thrives on decaying plant material in the forests and grasslands of North America and Europe. It is adapted to forest litter and contributes to global carbon recycling, degrading cellulose, hemicellulose and lignin in plant biomass...

ORGANISM(S): Agaricus bisporus

2015-09-23 | E-GEOD-65800 | biostudies-arrayexpress

Effect of sc3 and sc4 on aerial hypha formation

In order to study changes in gene expression during mushroom development in Schizophyllum commune, genome wide gene expression was analysed in 4 developmental stages: vegetative mycelium, stage I aggregates, stage II primordia and mature mushrooms. In order to study the effects of absence of express...

ORGANISM(S): Schizophyllum commune

2013-08-12 | E-GEOD-23531 | biostudies-arrayexpress

Metagenomic analysis of mushrooms

PRJNA786593 | ENA

Research Progress on Elements of Wild Edible Mushrooms.

Not available

S-EPMC9505289 | biostudies-literature

Genomes of amanitin-producing mushrooms

PRJNA679796 | ENA

Nucleotide sequencing and identification of some wild mushrooms.

Not available

S-EPMC3893008 | biostudies-literature