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TranscriptomicsPrimary human neuroblastoma
Reference1: Ohira M, Oba S, Nakamura Y, Isogai E, Kaneko S, Nakagawa A, Hirata T, Kubo H, Goto T, Yamada S, Yoshida Y, Fuchioka M, Ishii S, Nakagawara A. Expression profiling of human primary Expression profiling using a tumor-specific cDNA microarray predicts the prognosis of intermediate risk neur...
ORGANISM(S): Homo sapiens 
2005-05-12 | E-GEOD-2283 | biostudies-arrayexpress
MetabolomicsFragmentation patterns of methyloxime-trimethylsilyl derivatives of constitutive mono- and disaccharide isomers analyzed by gas chromatography/field ionization mass spectrometry
In saccharide analysis by gas chromatography/mass spectrometry (GC/MS), electron ionization (EI) is used almost exclusively, whereas other gentler methods of ionization are rarely used. Field ionization (FI) is recognized as a GC/MS ionization method that causes fewer fragment ions, but only few stu...
2015-12-27 | MTBLS215 | MetaboLights
GenomicsGenome-wide RING1B binding in Fbxl10 overexpressing 3T3-L1 cells at day 2 of differentiation
We analyzed RING1B binding regions in 3T3-L1 cell lines transduced with the retroviral vector for V5-tagged Fbxl10 or its dF-box mutant. RING1B ChIP-seq in empty, Fbxl10-1, and dF-box mutant vector transduced 3T3-L1 preadipocytes, in duplicate, and V5-Fbxl10 ChIP-seq in Fbxl10 overexpressing 3T3-L1 ...
ORGANISM(S): Mus musculus 
2015-03-04 | E-GEOD-64312 | biostudies-arrayexpress
TranscriptomicsExpression data from Fbxl10 overexpressing 3T3-L1 cells
Target genes of Fbxl10 during 3T3-L1 adipogenesis was analyzed 3T3-L1 cells overexpressing Fbxl10 using retrovirus system containing LTR promoter were differentiated and RNA was extracted at day 2 of differentiation
ORGANISM(S): Mus musculus 
2015-03-04 | E-GEOD-64154 | biostudies-arrayexpress
TranscriptomicsRole of calcium/calmodulin-dependent kinase type IV in podocyte function in lupus nephritis
Kidney podocytes and their slit diaphragms contribute to prevent urinary protein loss. T cell from patients with systemic lupus erythematosus display increased expression of calcium/calmodulin kinase IV (CaMKIV). Here we evaluated the functional role of CaMKIV in lupus nephritis (LN) using kidney b...
ORGANISM(S): Homo sapiens 
2014-08-01 | E-GEOD-55768 | biostudies-arrayexpress
ProteomicsOsterix propionylated peptide identification
Propionylated peptides derived from over-expressed HA-tagged osterix in HEK293T cells were identified.
ORGANISM(S): Mus Musculus (mouse) 
2018-11-05 | PXD009147 | JPOST Repository
ProteomicsProteomic analysis of Cdkal1-KO mouse podocyte cell line
E11 murine kidney podocyte cell line was purchased from Cell Lines Service. Cells were cultured in RPMI medium (Wako) supplemented with 10% fetal bovine serum (Sigma) at 33°C and induced to differentiate by culture at 37°C for two weeks and 5% CO2. Cdkal1 knockout in the E11 cell line was performed...
ORGANISM(S): Mus Musculus (mouse) 
2025-11-11 | PXD057714 | JPOST Repository
ProteomicsLFQ of mNeonGreen-Trap IP-MS from cells expressing HKDC1-mNeonGreen
Cells stably expressing full-length HKDC1-mNeonGreen or △N20 HKDC1-mNeonGreen proteins were grown in a 10-cm dish and were treated with or without antimycin/oligomycin for 3h, and then cross-linked with 0.1% formaldehyde for 10min at room temperature. After cross-linking was quenched with 100mM glyc...
ORGANISM(S): Homo Sapiens (human) 
2024-01-21 | PXD040970 | JPOST Repository
ProteomicssJIA serum proteome profiling with DIA-MS
We performed a DIA-MS proteomic analysis of sera from systemic juvenile idiopathic arthritis with different activity phases using a high protein depletion process. We profiled the proteins in the sera that differed significantly in their activity phase.
ORGANISM(S): Homo Sapiens (human) 
2022-04-26 | PXD030413 | JPOST Repository
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