Nanduri B B - OmicsDI

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Unknown (62)
Proteomics (14)
Transcriptomics (9)
Metabolomics (1)

Organisms

Allexis (14)
Arabidopsis thaliana (14)
Callinectes sapidus (14)
Drosophila (14)
Drosophila melanogaster (14)
Entamoeba histolytica (14)
Entamoeba histolytica HM-1:IMSS-A (14)
Escherichia coli (14)
Leishmania major strain Friedlin (14)
Listeria monocytogenes (14)
Medicago truncatula (14)
Meleagris gallopavo (14)
Methylohalobius crimeensis 10Ki (14)
Mus musculus (14)
Mycobacterium tuberculosis (14)
Oryza sativa Indica Group (14)
Physcomitrium patens (14)
Pseudomonas fluorescens WH6 (14)
Rattus norvegicus (14)
Saccharomyces cerevisiae (14)
Schizosaccharomyces pombe (14)
Schizosaccharomyces pombe 972h- (14)
Shigella (14)
Streptococcus pneumoniae (3)
Histophilus somni (1)
Colinus virginianus (1)
Pasteurella multocida subsp. multocida str. Pm70 (1)
Sus scrofa (1)
Mus musculus (1)
Homo sapiens (1)

Repository

pride (14)
biostudies-arrayexpress (9)
MetaboLights (1)

Tissue

Epithelial cell (2)
Brain (1)
Bronchoalveolar lavage (1)
Cumulus cell (1)
Kidney (1)
Liver (1)
Lung (1)
Macrophage (1)
Prokaryotic cell (1)

Disease

Bacterial pneumonia (1)
Listeriosis (1)
Salmonella infectious disease (1)
Yersinia enterocolitica intestinal infectious disease (1)

Technology Type

Mass Spectrometry (14)
Shotgun proteomics (7)
Bottom-up proteomics (6)
Mass spectrometry (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

LCQ Deca XP Plus (3)
Illumina HiSeq 3000 (2)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2012 (3)
2011 (3)
2018 (3)
2017 (2)
2014 (2)
2023 (1)
2015 (1)
2013 (1)
2010 (1)
2009 (1)
2021 (1)
2022 (1)
2020 (1)
2019 (1)
2016 (1)
2006 (1)

CHEBI ID

CHEBI:185590 (1)
CHEBI:185033 (1)
CHEBI:185082 (1)
CHEBI:184433 (1)
CHEBI:185588 (1)
CHEBI:185586 (1)
CHEBI:185161 (1)
CHEBI:185584 (1)
CHEBI:184906 (1)
CHEBI:185183 (1)
CHEBI:185582 (1)
CHEBI:185580 (1)
CHEBI:184474 (1)
CHEBI:184829 (1)
CHEBI:185175 (1)
CHEBI:184782 (1)
CHEBI:185578 (1)
CHEBI:184420 (1)
CHEBI:185576 (1)
CHEBI:184776 (1)
CHEBI:184405 (1)
CHEBI:185575 (1)
CHEBI:185573 (1)
CHEBI:185571 (1)
CHEBI:185568 (1)
CHEBI:185013 (1)
CHEBI:185567 (1)
CHEBI:168656 (1)
CHEBI:184791 (1)
CHEBI:169793 (1)

Metabolite Name

PS(DIME(11,5)/MONOME(13,5)) (1)
4,4,10-Trimethyl-1,11-bis(3-methylbut-2-en-1-yl)-10-(4-methylpent-3-en-1-yl)-9-(2-methylpropanoyl)-3-oxatricyclo[7.3.1.0²,⁷]trideca-2(7),5-diene-8,13-dione (1)
2-{[3,4-dihydroxy-5,6-bis({[(2E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoyl]oxy})oxan-2-yl]methoxy}-4,5-dihydroxy-6-(hydroxymethyl)oxan-3-yl (2E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoate (1)
{2-[(7Z,10Z,13Z,16Z)-docosa-7,10,13,16-tetraenoyloxy]-3-(tetracosanoyloxy)propoxy}[2-(methylamino)ethoxy]phosphinic acid (1)
TG(20:1(11Z)/22:2(13Z,16Z)/20:2(11Z,14Z)) (1)
1-(8-{[6-({[3,5-dihydroxy-6-(hydroxymethyl)-4-{[3,4,5-trihydroxy-6-({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)oxan-2-yl]oxy}oxan-2-yl]oxy}methyl)-3,4,5-trihydroxyoxan-2-yl]oxy}-1-hydroxy-6-methoxy-3-methylnaphthalen-2-yl)ethan-1-one (1)
2-amino-4-({1-[(carboxymethyl)-C-hydroxycarbonimidoyl]-2-({[3-(methylsulfanyl)propyl]thio(carbonoimidyl)}sulfanyl)ethyl}-C-hydroxycarbonimidoyl)butanoic acid (1)
(2E)-N-{2-[5,5'-dihydroxy-3'-(2-{[(2E)-1-hydroxy-3-(4-hydroxy-3-methoxyphenyl)prop-2-en-1-ylidene]amino}ethyl)-1H,1'H-[4,4'-biindole]-3-yl]ethyl}-3-(4-hydroxyphenyl)prop-2-enimidic acid (1)
(2R,3R)-2-(3,4-Dihydroxyphenyl)-6-[(2R,3R,4S)-2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-3-(3,4,5-trihydroxybenzoyloxy)-3,4-dihydro-2H-1-benzopyran-4-yl]-5,7-dihydroxy-3,4-dihydro-2H-1-benzopyran-3-yl 3,4,5-trihydroxybenzoate (1)
2-(Hydroxymethyl)-6-[(3,4,5-trihydroxy-6-{[16-hydroxy-2,6,6,10,11-pentamethyl-14-(6-methyl-2-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}hept-5-en-2-yl)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-5-yl]oxy}oxan-2-yl)methoxy]oxane-3,4,5-triol (1)
6-(16'-{[3,4-dihydroxy-6-(hydroxymethyl)-5-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-5,7',9',13'-tetramethyl-5'-oxaspiro[oxane-2,6'-pentacyclo[10.8.0.0²,⁹.0⁴,⁸.0¹³,¹⁸]icosane]-15'-oloxy)-3,4,5-trihydroxyoxane-2-carboxylic acid (1)
3-[({2-[(3-{[4-({[({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)-1,2-dihydroxy-3,3-dimethylbutylidene]amino}-1-hydroxypropylidene)amino]ethyl}sulfanyl)carbonyl]-4-hydroxy-4-phenylbutanoic acid (1)
PC(O-22:1(13Z)/22:2(13Z,16Z)) (1)
4-({[({[5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)-2-hydroxy-N-[2-({2-[(11E)-icos-11-enoylsulfanyl]ethyl}-C-hydroxycarbonimidoyl)ethyl]-3,3-dimethylbutanimidic acid (1)
(1R,2R,3R,11S,12S,14R,26R)-5,6',7',12-tetrahydroxy-6-methoxy-7,21,30-trimethyl-27-oxo-3',4'-dihydro-2'H-17,19,28-trioxa-24-thia-13,30-diazaspiro[heptacyclo[12.9.6.1³,¹¹.0²,¹³.0⁴,⁹.0¹⁵,²³.0¹⁶,²⁰]triacontane-26,1'-isoquinoline]-4(9),5,7,15(23),16(20),21-hexaen-22-yl acetate (1)
Ps(14:1(9z)/20:5(5z,8z,11z,14z,17z)) (1)
2-[6'-(5,7-Dihydroxy-4-oxo-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4H-chromen-2-yl)-2',3',4,4',5,6-hexahydroxy-[1,1'-biphenyl]-2-yl]-5,7-dihydroxy-3,4-dihydro-2H-1-benzopyran-3-yl 3,4,5-trihydroxybenzoate (1)
Heptacosane-6,8-dione (1)
3,4,5-trihydroxy-6-{[5-hydroxy-14-(1-hydroxy-6-methylhept-5-en-2-yl)-2,11,15-trimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-1(10)-en-8-yl]oxy}oxane-2-carboxylic acid (1)
2-[(7-{[4,5-dihydroxy-6-(hydroxymethyl)-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-5-hydroxy-2-(4-hydroxyphenyl)-4-oxo-4H-chromen-3-yl)oxy]-4,5-dihydroxy-6-(hydroxymethyl)oxan-3-yl (2E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoate (1)
TG(15:0/22:5(4Z,7Z,10Z,13Z,16Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z)) (1)
2-[2-({7-[(3-carboxy-3-{2-[(6-carboxy-3,4,5-trihydroxyoxan-2-yl)oxy]-2-oxoethyl}propanoyl)oxy]-11,16,18-trihydroxy-19-[(1-hydroxyethylidene)amino]-5,9-dimethylicosan-6-yl}oxy)-2-oxoethyl]butanedioic acid (1)
(6-{4-[2-(3,4-dihydroxyphenyl)-3,5,7-trihydroxy-3,4-dihydro-2H-1-benzopyran-8-yl]-3,5,7-trihydroxy-2-(3-hydroxyphenyl)-3,4-dihydro-2H-1-benzopyran-8-yl}-4,5-dihydroxy-2-(hydroxymethyl)oxan-3-yl)oxidanesulfonic acid (1)
[6,7,8,11,12,13,23-heptahydroxy-3,16-dioxo-21-(3,4,5-trihydroxybenzoyloxy)-2,17,20-trioxatetracyclo[17.3.1.0⁴,⁹.0¹⁰,¹⁵]tricosa-4,6,8,10,12,14-hexaen-22-yl]oxidanesulfonic acid (1)
N-Isobutyl-2E,4Z-octadecadienoyl amine (1)
PA(O-16:0/18:0) (1)
(4,5-dihydroxy-2-{[(1E)-3-hydroxy-3-methyl-1-[(sulfooxy)imino]pentyl]sulfanyl}-6-(hydroxymethyl)oxan-3-yl)oxidanesulfonic acid (1)
{[(2R,3R,5R)-3,4-dihydroxy-5-(2-hydroxy-4-imino-1,4-dihydropyrimidin-1-yl)oxolan-2-yl]methoxy}({hydroxy[(2R)-3-[(14-methylpentadecanoyl)oxy]-2-[(9Z,11Z)-octadeca-9,11-dienoyloxy]propoxy]phosphoryl}oxy)phosphinic acid (1)
{4-[2-(3,5-dihydroxyphenyl)-3,5,7-trihydroxy-3,4-dihydro-2H-1-benzopyran-8-yl]-5,7-dihydroxy-2-(3-hydroxyphenyl)-3,4-dihydro-2H-1-benzopyran-3-yl}oxidanesulfonic acid (1)
(2S,15R)-14-(5-ethyl-6-methylheptan-2-yl)-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-7-ylium-5-olate (1)

Modification

Not available (2)

Study type

Transcription profiling by array (5)
RNA-seq of coding RNA (3)
Transcription profiling by tiling array (1)

Release Date

2022 (12)
2016 (7)
2021 (6)
2020 (6)
2019 (6)
2014 (4)
2012 (4)
2023 (3)
2015 (3)
2025 (3)
2018 (3)
2017 (2)
2013 (2)
2011 (2)
2010 (2)
2024 (2)
2009 (1)
2026 (1)
2008 (1)
2006 (1)

Lab affiliation

Basic Sciences, College of Veterinary Medicine (3)
Sequence database group (2)
University of Florida (2)
Assistant Professor, Dept. of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, MS 39762 (1)
Biological Sciences Dept, Mississippi State University, Mississippi State, 39762 (1)
Department of Basic Sciences College Of Veterinary Medicine Mississippi State University Mississippi State, MS 39762(lab head) (1)
Department of Biological Sciences, Mississippi State University, Mississippi State, MS, USA 39762. (Lab Head) (1)
Environmental Laboratory US Army Engineer Research and Development Center Vicksburg, MS 39180, USA (1)
Mississippi State University (1)
Veterinary Science and Microbiology (1)

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Transcriptomic analysis of early B-cell development in the chicken embryo.

Not available

S-EPMC6771548 | biostudies-literature

The transcriptional response of Pasteurella multocida to three classes of antibiotics

We studied the effects of three classes of antibiotics (amoxicillin, chlortetracycline and enrofloxacin ) on P. multocida transcriptome using custom oligonucleotide microarrays from Nimblegen systems. All the 2015 genes of Pm70 were spotted on the array and hybridizations were carried out with RNA i...

ORGANISM(S): Pasteurella multocida subsp. multocida str. Pm70

2009-09-01 | E-GEOD-12779 | biostudies-arrayexpress

Impact of Difluoromethylornithine and AMXT 1501 on Gene Expression and Capsule Regulation in Streptococcus pneumoniae.

Not available

S-EPMC10887117 | biostudies-literature

Host response to S. pneumoniae TIGR4 and ΔpotABCD

The aim of this experiment is to determine the difference in protein expression, if any, in a mouse model of pneumococcal pneumonia using wild type and a polyamine transport operon deletion mutant strain of S. pneumoniae TIGR4, using expression proteomics. Eight week old female C57bl/6 mice were use...

ORGANISM(S): Mus musculus (Mouse)

2018-10-27 | PXD002300 | Pride

Epidemiology of Invasive Early-Onset and Late-Onset Group B Streptococcal Disease in the United States, 2006 to 2015: Multistate Laboratory and Population-Based Surveillance.

Not available

S-EPMC6439883 | biostudies-literature

The role of cadaverine synthesis on pneumococcal capsule and protein expression.

S. pneumoniae TIGR4 wild type strain and lysine decarboxylase deficient strain were cultured in quadruplicate in THY. Proteins were isolated, quantified, trypsin digested and analyzed by 1D LC ESI MS/MS.

ORGANISM(S): Streptococcus pneumoniae TIGR4

2018-01-24 | PXD008621 | Pride

Metabolism Complementation Cadaverine. Proteomics Polyamines Capsule Pneumococcal pneumonia Streptococcus pneumoniae

Porcine gene response following incision with energized devices

This study compares the gene expression changes in Sus scrofa in response to two different methods for abdominal surgical incisions ; electrosurgery and harmonic blade. As the use of laparoscopic surgery has become more widespread in recent years, the need has increased for minimally-invasive surgic...

ORGANISM(S): Sus scrofa

2013-12-15 | E-GEOD-47710 | biostudies-arrayexpress

Multiple epigenetic factors co-localize with HMGN proteins in A-compartment chromatin.

Not available

S-EPMC9235084 | biostudies-literature

Use of nCounter mRNA profiling to identify at-arrival gene expression patterns for predicting bovine respiratory disease in beef cattle.

Not available

S-EPMC8864212 | biostudies-literature

Application of Functional Genomics for Bovine Respiratory Disease Diagnostics.

Not available

S-EPMC4620937 | biostudies-literature

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