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ProteomicsDIA-based proteome profiling of nasopharyngeal swabs from COVID-19 patients
We sought to characterize the host response through proteome profiling of nasopharyngeal swab specimens. A mass spectrometer combining trapped ion mobility spectrometry and high-resolution QTOF mass spectrometer with a parallel accumulation-serial fragmentation (PASEF) was deployed for unbiased prot...
ORGANISM(S): Homo sapiens (Human) 
2021-09-10 | PXD025277 | Pride
Nasopharyngeal swabs Timstof Covd-19 Host response Dia 
GenomicsNasopharyngeal swabs
Metaserotyping nasopharyngeal swabs raw sequence reads
PRJNA1270937 | ENA
GenomicsMetaserotyping nasopharyngeal swabs raw sequence reads
Metaserotyping nasopharyngeal swabs
PRJEB90077 | ENA
ProteomicsNoninvasive Nasopharyngeal Proteomics Identify Coagulation Abnormalities in SARS-CoV-2
Vaccines/drugs that could utilize the mucosal immune system to produce antibodies in the nose should help stop the coronavirus at the point of entry. Therefore, Identification of biomarkers in nasal microenvironment associated with viral clearance, vaccine implementation, and easily measurable corre...
ORGANISM(S): Homo sapiens (Human) 
2022-07-21 | PXD029143 | Pride
Nasopharyngeal swabs Sars-cov-2 Complement and coagulation cascade Proteomics 
ProteomicsQuantitative proteomic dataset from oro- and naso-pharyngeal swabs used for COVID-19 diagnosis: detection of viral proteins and host’s biological processes altered by the infection
We recovered proteins from SARS-CoV-2 positive and negative oro/naso-pharyngeal swabs, obtained from diagnostic center localized at Institut Pasteur de Montevideo, and performed comparative quantitative proteomic analysis.
ORGANISM(S): Homo sapiens (Human) SARS bat coronavirus 
2020-07-28 | PXD020394 | Pride
Covid-19 Proteomics Sars-cov-2 
TranscriptomicsRNA-seq analysis of nasopharyngeal swabs from asymptomatic and mildly symptomatic COVID-19 patients
We used total RNA of nasopharyngeal swabs from COVID-19 patients to identify their gene expression profile. Multiple biological process were significantly enriched in either asymptomatic or mildly symptomatic patients. These significantly expressed genes were suggested to contribute to the severity ...
ORGANISM(S): Homo sapiens 
2022-06-29 | GSE186651 | GEO
TranscriptomicsThe nasopharyngeal microbiota of cattle with bovine respiratory disease
The nasopharyngeal microbiota of healthy cattle vs. cattle diagnosed with BRD in a commercial feedlot setting was compared using a high-density 16S rRNA microarray (Phylochip). Nasopharyngeal samples were taken from both groups of animals (n=5) at feedlot entry (day 0) and >60 days later.
ORGANISM(S): Bos taurus 
2015-06-21 | E-MTAB-3430 | biostudies-arrayexpress
UnknownEvaluation of SARS-CoV-2 quantification from oropharyngeal swabs, nasopharyngeal swabs, and naso-oropharyngeal swabs: A cross-sectional study.
Not available
S-EPMC10998208 | biostudies-literature
UnknownUpper respiratory tract detection of Mycoplasma ovipneumoniae employing nasopharyngeal swabs.
Not available
S-EPMC11529185 | biostudies-literature
GenomicsNasopharyngeal swab samples
Nasopharyngeal swabs Raw sequence reads
PRJNA752146 | ENA
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