Natural transformation

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Organisms

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soil metagenome (2)
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Methylotenera versatilis 79 (1)
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Repository

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Anaplastic large cell lymphoma has DiseaseStaging II (1)
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Technology Type

Mass spectrometry (108)
Mass Spectrometry (41)
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SWATH MS (5)
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Illumina HiSeq 2500 (1)
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Affinity proteomics (1)
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HDMSE (1)
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SRM/MRM (1)

Instrument Platform

Illumina NovaSeq 6000 (259)
Illumina HiSeq 4000 (123)
NextSeq 500 (123)
Illumina HiSeq 2000 (120)
Illumina HiSeq 2500 (116)
Illumina NovaSeq X (34)
NextSeq 2000 (31)
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418 [Affymetrix] (11)
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HiSeq X Ten (4)

Publication Date

2010 (1702)
2013 (1679)
2014 (1503)
2012 (1416)
2011 (1354)
2015 (1330)
2016 (778)
2008 (611)
2009 (528)
2007 (227)
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UNIPROT ID/AC

A5V2A0_SPHWW (4)
A5V2E2_SPHWW (4)
A5V2E5_SPHWW (4)
A5V2G0_SPHWW (4)
A5V2H3_SPHWW (4)
A5V2H4_SPHWW (4)
A5V2H5_SPHWW (4)
A5V2H6_SPHWW (4)
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A5V2T3_SPHWW (4)
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A5V3A5_SPHWW (4)
A5V3A7_SPHWW (4)
A5V3B4_SPHWW (4)
A5V3D3_SPHWW (4)
A5V3E7_SPHWW (4)
A5V3E9_SPHWW (4)
A5V3F9_SPHWW (4)
A5V3H0_SPHWW (4)
A5V3L6_SPHWW (4)
A5V3M0_SPHWW (4)
A5V3S5_SPHWW (4)
A5V4C9_SPHWW (4)
A5V4K4_SPHWW (4)
A5V4L3_SPHWW (4)
A5V4R1_SPHWW (4)

CHEBI ID

CHEBI:30769 (31)
CHEBI:15428 (29)
CHEBI:15741 (27)
CHEBI:18012 (24)
CHEBI:28044 (23)
CHEBI:16919 (23)
CHEBI:27266 (22)
CHEBI:16015 (22)
CHEBI:17368 (22)
CHEBI:16708 (21)
CHEBI:15891 (21)
CHEBI:16335 (21)
CHEBI:17295 (21)
CHEBI:25017 (20)
CHEBI:16704 (20)
CHEBI:6650 (20)
CHEBI:30915 (20)
CHEBI:15354 (20)
CHEBI:17895 (20)
CHEBI:18186 (19)
CHEBI:17234 (19)
CHEBI:16857 (19)
CHEBI:25094 (19)
CHEBI:17568 (19)
CHEBI:17053 (19)
CHEBI:17191 (19)
CHEBI:15603 (19)
CHEBI:17596 (19)
CHEBI:26271 (18)
CHEBI:32816 (18)

Metabolite Name

Taurine (18)
Uridine (18)
L-Phenylalanine (18)
Choline (17)
Adenine (17)
Creatine (16)
L-Tyrosine (16)
Glycine (15)
Adenosine (14)
L-Isoleucine (14)
L-Threonine (13)
L-Tryptophan (13)
L-Glutamine (13)
L-Valine (13)
Betaine (12)
L-Histidine (12)
Guanine (12)
Cytosine (12)
L-Leucine (12)
Inosine (12)
Ornithine (11)
Tyrosine (11)
Alanine (11)
Guanosine (11)
Sucrose (11)
Creatinine (11)
Hypoxanthine (11)
Leucine (10)
Uracil (10)
Acetylcholine (10)

First Public Date

2026 (30)
2025 (25)
2013 (24)
2014 (20)
2023 (16)
2024 (15)
2019 (15)
2022 (8)
2021 (8)
2018 (8)
2020 (7)
2016 (7)
2015 (5)
2017 (2)
2012 (1)

Classification

bacteria (28)
protozoa (1)

Study type

Transcription profiling by array (7591)
RNA-seq of coding RNA (1388)
ChIP-seq (1028)
Unknown experiment type (334)
ChIP-chip by tiling array (330)
RNA-seq of non coding RNA (237)
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Methylation profiling by array (159)
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Animal - High-throughput sequencing (17)
RNAi profiling by array (17)
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CUT&RUN (17)
High-throughput sequencing (15)
RIP-seq (12)
CLIP-seq (10)
Human - High-throughput sequencing (9)
Single nucleus RNA sequencing (7)
Animal - One-color microarray (6)

Release Date

2013 (1744)
2010 (1735)
2014 (1596)
2012 (1472)
2015 (1439)
2011 (1393)
2025 (1160)
2024 (1013)
2022 (986)
2016 (960)
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2020 (694)
2008 (635)
2019 (580)
2009 (550)
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2017 (380)
2026 (294)
2007 (236)
2006 (111)
2005 (105)
2004 (74)
2002 (15)
2001 (13)
2003 (12)
1999 (8)
2000 (4)
1998 (4)
1997 (2)

Lab affiliation

Advanced Water Management Centre, The University of Queensland (1)
Advanced Water Management Centre, The University of Queensland, St. Lucia, Brisbane, QLD 4072, Australia (1)
Bioanalytical Mass Spectrometry Group, Max Planck Institute for Multidisciplinary Sciences, 37077 Göttingen, Germany (1)
CHU de Besancon, Besancon, France (1)
Children's Hospital of Philadelphia (1)
Department of Biotechnology, Institute of Bioprocess Science and Engineering, University of Natural Resources and Life Sciences Vienna (1)
Department of Breast Surgery, The First Affiliated Hospital of Xi'an Jiaotong University, 277 West Yanta Road, 710061 Xi’an, People’s Republic of China. (1)
Department of Medical Biotechnology and Laboratory Science College of Medicine, Chang Gung University, Taoyuan, Taiwan (1)
Department of Molecular Biology and Biotechnology, Institute of Plant Protection—National Research Institute, Poznan, Poland (1)
Department of Molecular Sciences, Faculty of Science and Engineering, Macquarie University, North Ryde, NSW 2109, Australia (1)
Department of Molecular and Cellular Biology, University of Guelph, Canada. (1)
Dept of Biopathology and Medical Biotechnologies, section of Biology and Genetics - University of Palermo Via Divisi 83, 90133 Palermo (1)
Doctor at Tongji Hospital, Huazhong University of Science and Technology, Wuhan, China (1)
Drug Discovery Moffitt Cancer Center Tampa, FL, USA (1)
Département de Biologie Cellulaire, Université de Genève (1)
Fungal Molecular Ecology, Biosciences, Swansea University, Swansea, Wales (1)
Head of Proteomics at Monte Rosa Therapeutics (1)
Helmholtz Centre for Environmental Research GmbH - UFZ Department of Molecular Systems Biology Permoserstraße 15, 04318 Leipzig, Germany (1)
Henan Agricultural University (1)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (1)
Jarboe Lab, Chemical and Biological engineering, Iowa State University, Iowa, USA (1)
Julian Langer: MPI for Biophysics and Brain Research Kate Heesom (k.heesom@bristol.ac.uk): University of Bristol Proteomics Facility (1)
LPCV/EDY-IRIG-CEA Grenoble 17 av des martyrs 38100 France (1)
Lab. Neuro-Oncology and Clinical Cancer Proteomics, Erasmus Medical Center, the Netherlands (1)
Laboratory of Organic Mass Spectrometry, Department of Chemical Sciences, University of Catania, Viale A. Doria 6, 95125, Catania, Italy (1)
Max-Planck-Institute for Biology (1)
Microbial Biodegradation and Bioprospection Research Group, Interdisciplinary Centre of Marine and Environmental Research (CIIMAR), University of Porto, Terminal de Cruzeiros do Porto de Leixões, Avenida General Norton de Matos s/n, 4450-208, Matosinhos, Portugal (1)
Microbial Physiology and Molecular Biology, Institute of Microbiology, University of Greifswald (1)
Molecular and Cellular Biology Department, University of Guelph, Ontario, Canada (1)
Prof. Dr. Martin von Bergen Head of Department of Molecular Systems Biology Helmholtz-Zentrum für Umweltforschung GmbH - UFZ Helmholtz Centre for Environmental Research GmbH - UFZ Permoserstraße 15, 04318 Leipzig, Germany Phone +49 341 235 1211 Martin.vonbergen@ufz.de, http://www.ufz.de/index.php?de=40881 (1)

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A metabolic dependency of EBV can be targeted to hinder B cell transformation

Following infection of B cells, Epstein Barr virus (EBV) engages host pathways that mediate cell proliferation and transformation, contributing to the propensity of the virus to drive immune dysregulation and lymphomagenesis. We found that the EBV protein EBNA2 initiates NAD de novo bios...

2024-04-29 | MTBLS2243 | MetaboLights

Navigating natural variation in herbivory-induced secondary metabolism in coyote tobacco populations using MS/MS structural analysis

Natural variation can be extremely useful in unraveling the determinants of phenotypic trait evolution but has rarely been analyzed with unbiased metabolic profiling to understand how its effects are organized at the level of biochemical pathways. Native populations of Nicotiana attenuata, a wild to...

2015-06-15 | MTBLS203 | MetaboLights

Metabolomic and Metataxonomic Fingerprinting of Human Milk Suggests Compositional Stability over a Natural Term of Breastfeeding to 24 Months

Sparse data exist regarding the normal range of composition of maternal milk beyond the first postnatal weeks. This single timepoint, observational study in collaboration with the 'Parenting Science Gang' citizen science group evaluated the metabolite and bacterial composition of human milk from 62 ...

2022-02-11 | MTBLS1370 | MetaboLights

Nucleases Encoded by Integrated Elements CJIE2 and CJIE4 Inhibit Natural Transformation of Campylobacter jejuni

The species Campylobacter jejuni is naturally competent for DNA uptake; nevertheless, nonnaturally transformable strains do exist. For a subset of strains we previously showed that a periplasmic DNase, encoded by dns, inhibits natural transformation in C. jejuni. In the present study, genetic factor...

ORGANISM(S): Campylobacter jejuni

2009-11-13 | E-GEOD-18399 | biostudies-arrayexpress

Identification of transformation-related pathways in a breast epithelial cell model using a ribonomics approach.

Employing MCT-1 oncogene mediated transformation of immortalized breast epithelial MCF10A cells; we characterized the largely reciprocal association of these two RBPs with target mRNAs and their influence on protein expression vis-à-vis cellular transformation. Using a ribonomics approach, we ident...

ORGANISM(S): Homo sapiens

2008-07-29 | E-GEOD-12215 | biostudies-arrayexpress

Natural Transformation of Bacteria by Damaged DNA

Bacterial Natural Transformation by Highly Fragmented and Damaged DNA

PRJEB4698 | ENA

comparative proteomics studies of the wild strain SC1401 and the tfoX deficient strain

Natural transformation, as one of the horizontal gene transfer (HGT) modes of bacteria, allows bacteria to actively uptake foreign DNA under natural conditions and integrate it into their genome through homologous recombination. Natural transformation plays an vital role in the rapid spread of patho...

ORGANISM(S): Glaesserella Parasuis

2022-03-17 | PXD032382 |

Diverse conjugative elements silence natural transformation in Legionella species

PRJEB31835 | ENA

Recombination events from natural transformation

Determination of recombination events by natural transformation promoted by YraN/ComM and CoiA/RadA

PRJEB124975 | ENA

Diversity in natural transformation frequencies and regulation across Vibrio species

PRJNA564094 | ENA