Nayak A A - OmicsDI

Show results for

Unknown (1900)
Transcriptomics (29)
Proteomics (20)
Metabolomics (6)
Models (3)
Other (2)
Genomic (1)
Genomics (1)

Organisms

Homo sapiens (31)
Mus musculus (6)
Macaca mulatta (3)
Plasmodium cynomolgi strain B (2)
Bacillus subtilis (1)
Aedes albopictus (1)
Aspergillus flavus (1)
Bungarus caeruleus (1)
Mycobacterium tuberculosis (1)
Mycobacterium tuberculosis H37Rv (1)
Oryza sativa (1)
Synechococcus elongatus (1)

Organisms

soil metagenome (1)

Repository

biostudies-arrayexpress (29)
pride (16)
MassIVE (6)
MetaboLights (4)
BioModels (3)
GNPS (2)
dbGaP (1)
ENA (1)

Tissue

Bone marrow (2)
Erythrocyte (2)
Aorta (1)
Blood cell (1)
C2C12 cell (1)
Cell culture (1)
Conidium (1)
Epithelial cell (1)
Fungal cell (1)
Larva (1)
Leaf (1)
Mycelium (1)
Nasal mucosa (1)
Pancreatic islet (1)
Photosynthetic cell (1)
Sclerotium (1)
Skeletal muscle myoblast (1)
Stem cell (1)
Type B pancreatic cell (1)
Umbilical cord (1)
Urine (1)
Venom gland (1)

Disease

Malaria (2)
Blood coagulation disease (1)
Acute leukemia (1)
Bladder urachal urothelial carcinoma (1)
COVID-19 (1)
Cachexia (1)
Graft-versus-host disease (1)
Insulinoma (1)

Technology Type

Mass Spectrometry (16)
Shotgun proteomics (10)
Mass spectrometry (4)
Bottom-up proteomics (3)
Data-dependent acquisition (1)
Gel-based experiment (1)
SRM/MRM (1)

Instrument Platform

API 4000 (4)
TSQ Quantum Ultra (4)
Illumina HiSeq 2500 (2)
Illumina HiSeq 4000 (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Single cells were captured using the 10x Genomics Chromium Controller. (1)
MACS (1)
NextSeq 500 (1)
Orbitrap Fusion Lumos (1)
Q Exactive (1)
Q Exactive HF (1)
Q Exactive HF-X (1)
Q Exactive Plus (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - alternating - hilic (1)

Publication Date

2017 (7)
2019 (6)
2021 (6)
2025 (4)
2020 (4)
2015 (4)
2022 (4)
2024 (3)
2018 (3)
2014 (3)
2013 (3)
2010 (3)
2007 (2)
2023 (2)
2016 (1)
2011 (1)
2009 (1)
2008 (1)
2026 (1)

CHEBI ID

CHEBI:15760 (2)
CHEBI:15882 (2)
CHEBI:17111 (2)
CHEBI:17847 (2)
CHEBI:18237 (2)
CHEBI:18385 (2)
CHEBI:44920 (2)
CHEBI:10049 (1)
CHEBI:10093 (1)
CHEBI:101085 (1)
CHEBI:109895 (1)
CHEBI:1109 (1)
CHEBI:12387 (1)
CHEBI:124991 (1)
CHEBI:125535 (1)
CHEBI:131887 (1)
CHEBI:131924 (1)
CHEBI:132244 (1)
CHEBI:132448 (1)
CHEBI:132883 (1)
CHEBI:133026 (1)
CHEBI:133057 (1)
CHEBI:133094 (1)
CHEBI:133657 (1)
CHEBI:133662 (1)
CHEBI:133756 (1)
CHEBI:133758 (1)
CHEBI:133842 (1)
CHEBI:134092 (1)
CHEBI:134281 (1)

Metabolite Name

2-[3-Carboxy-3-(methylammonio)propyl]-L-histidine (2)
((Imino(methoxy)methyl)amino)(diphenoxy)phosphine oxide (1)
(1'S,2R,2'R,10'S,11'S,15'S)-17'-hydroxy-2',15'-dimethylspiro[oxolane-2,14'-tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecane]-6',8'-diene-5,5'-dione (1)
(1-{1-[(4-hydroxy-3-methoxyphenyl)methyl]-7,8-dimethoxy-2,2-dimethyl-1,2,3,4-tetrahydro-2λ⁵-isoquinolin-2-yl}ethylidene)-λ⁴-oxidanyliumyl (1)
(10,14a-dihydroxy-2,2,4a,6a,6b,9,9,12a-octamethyl-docosahydropicen-13-yl)oxidanesulfonic acid (1)
(10S,14S)-10,14,20-trimethyl-16-methylidene-22-azahexacyclo[12.10.0.0²,¹¹.0⁵,¹⁰.0¹⁵,²³.0¹⁷,²²]tetracosan-5-ylium-7-olate (1)
(12aR)-4-(dimethylamino)-4a,5,10,12a-tetrahydroxy-6-methylidene-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-1,3,11,12-tetrone (1)
(12aR)-7-chloro-4-(dimethylamino)-4,6,10,12a-tetrahydroxy-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-1,3,11,12-tetrone (1)
(12aS)-4,7-bis(dimethylamino)-10,12,12a-trihydroxy-1,3,11-trioxo-9-(2-oxoacetamido)-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-2-carboximidic acid (1)
(12aS)-9-{[2-(tert-butylamino)-1-hydroxyethylidene]amino}-4,7-bis(dimethylamino)-5,10,12,12a-tetrahydroxy-1,3,11-trioxo-1,2,3,4,4a,5,5a,6,11,12a-decahydrotetracene-2-carboximidic acid (1)
(13-{[5-(acetyloxy)-3,4-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1,6,6,11,15-pentamethyl-14-(6-methylhept-5-en-2-yl)-5-[(3,4,5-trihydroxyoxan-2-yl)oxy]tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-7-en-9-yl)oxidanesulfonic acid (1)
(13R)-5-(3,4-dihydroxyphenyl)-6,9,17,19,21-pentahydroxy-13-(4-hydroxyphenyl)-4,12,14-trioxapentacyclo[11.7.1.0²,¹¹.0³,⁸.0¹⁵,²⁰]henicosa-2(11),3(8),5,9,15,17,19-heptaen-7-one (1)
(15Z)-Octadec-15-en-9,11,13-triynoic acid (1)
(1R)-1,4-bis({[(2E)-3-(3,4-dihydroxyphenyl)prop-2-enoyl]oxy})-3-hydroxy-5-(sulfooxy)cyclohexane-1-carboxylic acid (1)
(1R,16Z,24E,26E,28Z)-1,18,26,27-tetrahydroxy-19,30-dimethoxy-12-[1-(3-methoxy-4-oxocyclohexyl)propan-2-yl]-15,17,21,23,29,35-hexamethyl-11,36-dioxa-4-azatricyclo[30.3.1.0⁴,⁹]hexatriaconta-16,24,26,28-tetraene-2,3,10,14,20-pentone (1)
(1R,16Z,24E,26E,28Z)-1,18-dihydroxy-12-[1-(4-hydroxy-3-methoxycyclohexyl)propan-2-yl]-19,30-dimethoxy-15,17,21,23,29-pentamethyl-35-methylidene-11,36-dioxa-4-azatricyclo[30.3.1.0⁴,⁹]hexatriaconta-16,24,26,28-tetraene-2,3,10,14,20-pentone (1)
(1R,2R,3R,11S,12S,14R,26R)-5,6',7',12-tetrahydroxy-6-methoxy-7,21,30-trimethyl-27-oxo-3',4'-dihydro-2'H-17,19,28-trioxa-24-thia-13,30-diazaspiro[heptacyclo[12.9.6.1³,¹¹.0²,¹³.0⁴,⁹.0¹⁵,²³.0¹⁶,²⁰]triacontane-26,1'-isoquinoline]-4(9),5,7,15(23),16(20),21-hexaen-22-yl acetate (1)
(1R,2S,3R,4R,5S,6R,7S)-1,3,4,5,7,8,9,10,10-Nonachlorotricyclo[5.2.1.0²,⁶]dec-8-ene (1)
(1R,6S,12R,15S)-5,5-Dimethyl-11,13-dioxatetracyclo[7.5.1.0¹,⁶.0¹²,¹⁵]pentadec-8-ene (1)
(1R,9S,18Z,24R)-12-[1-(4-chloro-3-hydroxycyclohexyl)prop-1-en-2-yl]-17-ethyl-1,14-dihydroxy-23,25-dimethoxy-13,19,21,27-tetramethyl-11,28-dioxa-4-azatricyclo[22.3.1.0⁴,⁹]octacos-18-ene-2,3,10,16-tetrone (1)
(1R,9S,18Z,24R)-12-[1-(4-chloro-3-methoxycyclohexyl)prop-1-en-2-yl]-17-ethyl-1,14-dihydroxy-13-(hydroxymethyl)-23,25-dimethoxy-19,21,27-trimethyl-11,28-dioxa-4-azatricyclo[22.3.1.0⁴,⁹]octacos-18-ene-2,3,10,16-tetrone (1)
(1S)-1,3,4-trihydroxy-5-(sulfooxy)cyclohexane-1-carboxylic acid (1)
(1S,16Z,24E,26E,28Z)-1,18-dihydroxy-12-{1-[4-(2-hydroxyethoxy)-3-methoxycyclohexyl]propan-2-yl}-15-(hydroxymethyl)-19,30-dimethoxy-17,21,23,29,35-pentamethyl-11,36-dioxa-4-azatricyclo[30.3.1.0⁴,⁹]hexatriaconta-16,24,26,28-tetraene-2,3,10,14,20-pentone (1)
(1S,16Z,24E,26E,28Z)-1,18-dihydroxy-12-{1-[4-(2-hydroxyethoxy)-5-methoxy-2-oxocyclohexyl]propan-2-yl}-19,30-dimethoxy-15,17,21,23,29,35-hexamethyl-11,36-dioxa-4-azatricyclo[30.3.1.0⁴,⁹]hexatriaconta-16,24,26,28-tetraene-2,3,10,14,20-pentone (1)
(1S,2R,10S,11S,14R,15R)-2,15-Dimethyl-14-[(2R)-6-methylheptan-2-yl]tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-7-ene (1)
(1S,2S,10S,11S,15R)-14-(5,6-dimethylheptan-2-yl)-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecane-5,17-diol (1)
(1S,2S,5R,7R,10S,11S,14R,15S,17S)-14-[(1R)-1,2-Dihydroxyethyl]-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecane-5,14,17-triol (1)
(1S,2S,5S,10R,11S,14R,15R)-14-[(2R,5R)-5-Ethyl-6-methylheptan-2-yl]-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-5-ol (1)
(1S,2S,7S,10R,15R)-2,15-dimethyl-14-(1,4,6-trihydroxy-6-methylheptan-2-yl)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecane-5,9,16-triol (1)
(1S,5R,13R,17S)-15-[(1S,3S,5R,13R)-10,14-Dimethoxy-4-methyl-12-oxa-4-azapentacyclo[9.6.1.0¹,¹³.0⁵,¹⁷.0⁷,¹⁸]octadeca-7(18),8,10,14,16-pentaen-3-yl]-17-hydroxy-10-methoxy-4-methyl-12-oxa-4-azapentacyclo[9.6.1.0¹,¹³.0⁵,¹⁷.0⁷,¹⁸]octadeca-7(18),8,10,15-tetraen-14-one (1)

IsPrivate

False (3)

Model Flag

Non Kinetic (1)

Submitter Keywords

Immuno-oncology (1)

First Public Date

2016 (1)

Modelling Approach

Ordinary differential equation model (2)

Study type

Transcription profiling by array (12)
Methylation profiling by array (7)
RNA-seq of coding RNA (6)
Human - Single-cell sequencing (1)
Ribo-seq (1)
Other (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (238)
2022 (216)
2024 (207)
2021 (193)
2023 (176)
2020 (166)
2018 (101)
2019 (93)
2017 (86)
2016 (72)
2014 (71)
2013 (60)
2015 (58)
2026 (50)
2012 (43)
2010 (33)
2011 (31)
2009 (12)
2008 (9)
2007 (4)
2006 (3)
2004 (3)
2005 (1)
2002 (1)
2000 (1)
1997 (1)

Lab affiliation

Emory University (2)
All India Institute of Medical Sciences, New Delhi, India (1)
Associate Professor and Group Leader Indian Institute of Science Bangalore, India (1)
Associate Professor, Biosciences and Bioengineering Department, IIT Bombay (1)
Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine 269 Campus Drive CCSR 3205b Stanford, CA 94305-5175 USA (1)
Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine 269 Campus Drive Stanford, CA 94305-5175, USA (1)
Cardiovascular Research Institute (1)
Core Facility Proteomics Hannover Medical School Carl-Neuberg-Str. 1 30625 Hannover Germany (1)
Group Leader, Vector Borne Diseases International Centre for Genetic Engineering and Biotechnology Aruna Asaf Ali Marg 110067 New Delhi, India (1)
KIIT Deemed to be University (1)
Professor, Department of Biological Sciences, National University of Singapore (1)
Professor, Department of Plant Pathology, UAS, Dharwad, Karnataka, India (1)
Reserch Scientist, Institute of Bioinformatics, Bangalore (1)
USDA-ARS Crop Protection and Management Research Unit Tifton, GA 31794 (1)
UT Health San Antonio (1)

Previous page
1 / 197
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 197
Next page

Sort by:

Relevance

Page size

EMT alterations in the solute carrier landscape uncover SLC22A10/A15 imposed vulnerabilities in pancreatic cancer

The involvement of membrane-bound solute carriers (SLCs) in neoplastic transdifferentiation processes is poorly defined. Here, we examined changes in the SLC landscape during epithelial-mesenchymal transition (EMT) of pancreatic cancer cells. We show that two SLCs from the organic anion...

2021-10-15 | MTBLS1925 | MetaboLights

Nayak2015 - Blood Coagulation Network - Predicting the Effects of Various Therapies on Biomarkers

Nayak2015 - Blood Coagulation Network - Predicting the Effects of Various Therapies on Biomarkers Note: The SBML model is generated from SimBiology. The SimBiology (.sbproj) file is available for download from the curation tab. This model is des...

2024-09-02 | BIOMD0000000611 | BioModels

Identification of full length, splicing and cleavage products of SufB protein of SUF-complex of Mycobacterium tuberculosis

SufB, an Fe-S cluster assembly protein is critical for mycobacterial survival and virulence; but as a protein still at its nascent stage. SufB is interrupted by an intein sequence, which excises itself out from the full length protein post-translationally. Intein splicing is crucial for the activati...

ORGANISM(S): Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis

2022-02-15 | PXD015199 | Pride

Gene expression from CEPH-Utah,CHB+JPT, and YRI individuals to examine gene expression correlation

We used microarrays to examine gene expression levels in individuals from different populations (cephgp, chb, jpt, yri). The chb and jpt populations are combined in the analysis. We measured gene expression levels in 295 lymphoblastoid cell lines representing 4 ethnically-distinct populations. For...

ORGANISM(S): Homo sapiens

2009-08-13 | E-GEOD-12526 | biostudies-arrayexpress

Severe maternal morbidity and risk of transplant rejection in pregnant patients with a history of solid-organ transplant.

Not available

S-EPMC12814856 | biostudies-literature

Urolithiasis in a child with Spondylocarpotarsal Synostosis Syndrome: A Co-Incidence.

Not available

S-EPMC3809675 | biostudies-literature

Nascent elongating transcript sequencing (NET-seq) for Escherichia coli and Bacillus subtilis reveals a consensus pause sequence enriched at translation start sites.

Transcription by RNA polymerase (RNAP) is interrupted by pauses that play diverse regulatory roles. Although individual pauses have been studied in vitro, the determinants of pauses in vivo and their distribution throughout the bacterial genome remain unknown. Using nascent transcript sequencing we ...

ORGANISM(S): Bacillus subtilis

2014-05-05 | E-GEOD-56720 | biostudies-arrayexpress

PHACE syndrome with lip haemangioma, microphthalmos and persistent fetal vasculature.

Not available

S-EPMC4840598 | biostudies-literature

Analysis of the transmembrane domain of influenza virus neuraminidase, a type II transmembrane glycoprotein, for apical sorting and raft association.

Not available

S-EPMC112163 | biostudies-literature

Lung ultrasound for evaluation of dyspnea: a pictorial review.

Not available

S-EPMC9732207 | biostudies-literature

Previous page
1 / 197
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 197
Next page

Sort by:

Relevance

Page size

1962 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

CHEBI ID

Metabolite Name

IsPrivate

Model Flag

Submitter Keywords

First Public Date

Modelling Approach

Study type

Release Date

Lab affiliation

OmicsDI is part of the ELIXIR infrastructure

Tweets