Nayak N N - OmicsDI

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Unknown (731)
Transcriptomics (28)
Proteomics (11)
Metabolomics (4)
Other (2)
Genomic (1)

Organisms

Homo sapiens (23)
Alphavirus (8)
Archaea (8)
Bacteria (8)
Betaherpesvirinae (8)
Borrelia (8)
Botrytis cinerea (8)
Chlorella vulgaris (8)
Clostridium perfringens (8)
Enterovirus A71 (8)
Eukaryota (8)
Hepatitis B virus (8)
Human alphaherpesvirus 1 (8)
Human betaherpesvirus 5 (8)
Influenza A virus (8)
Influenza C virus (8)
Japanese encephalitis virus group (8)
Listeria monocytogenes (8)
Mammarenavirus (8)
Miscanthus x giganteus (8)
Mus musculus (8)
Mycobacterium tuberculosis (8)
Orthoflavivirus (8)
Panicum virgatum (8)
Pseudomonas aeruginosa (8)
Rattus (8)
Severe acute respiratory syndrome coronavirus 2 (8)
Staphylococcus aureus (8)
Mus musculus (4)
Bacillus subtilis (1)

Repository

biostudies-arrayexpress (28)
pride (8)
MassIVE (5)
MetaboLights (4)
dbGaP (1)

Tissue

Bone marrow (2)
Erythrocyte (2)
Aorta (1)
C2C12 cell (1)
Larva (1)
Skeletal muscle myoblast (1)
Stem cell (1)
Umbilical cord (1)
Urine (1)

Disease

Malaria (2)
Bladder urachal urothelial carcinoma (1)
Cachexia (1)
Graft-versus-host disease (1)

Technology Type

Mass Spectrometry (8)
Mass spectrometry (4)
Shotgun proteomics (4)
Bottom-up proteomics (1)
Data-dependent acquisition (1)
Gel-based experiment (1)
SRM/MRM (1)

Instrument Platform

Illumina HiSeq 2500 (2)
Illumina HiSeq 4000 (2)
API 4000 (2)
TSQ Quantum Ultra (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Single cells were captured using the 10x Genomics Chromium Controller. (1)
MACS (1)
NextSeq 500 (1)
Q Exactive HF (1)
Q Exactive HF-X (1)
Q Exactive Plus (1)
Liquid Chromatography MS - alternating - hilic (1)
Gas Chromatography MS - (1)

Publication Date

2021 (5)
2017 (5)
2015 (4)
2022 (4)
2025 (3)
2020 (3)
2013 (3)
2010 (3)
2014 (2)
2007 (2)
2019 (2)
2018 (1)
2016 (1)
2012 (1)
2011 (1)
2009 (1)
2008 (1)
2023 (1)
2026 (1)

CHEBI ID

CHEBI:17847 (2)
CHEBI:17111 (2)
CHEBI:15882 (2)
CHEBI:44920 (2)
CHEBI:15760 (2)
CHEBI:18385 (2)
CHEBI:18237 (2)
CHEBI:185033 (1)
CHEBI:185082 (1)
CHEBI:184433 (1)
CHEBI:185588 (1)
CHEBI:185586 (1)
CHEBI:185161 (1)
CHEBI:185584 (1)
CHEBI:184906 (1)
CHEBI:185183 (1)
CHEBI:185582 (1)
CHEBI:185580 (1)
CHEBI:184474 (1)
CHEBI:184829 (1)
CHEBI:185175 (1)
CHEBI:184782 (1)
CHEBI:185578 (1)
CHEBI:184420 (1)
CHEBI:185576 (1)
CHEBI:184776 (1)
CHEBI:184405 (1)
CHEBI:185575 (1)
CHEBI:185573 (1)
CHEBI:185571 (1)

Metabolite Name

2-[3-Carboxy-3-(methylammonio)propyl]-L-histidine (2)
PS(DIME(11,5)/MONOME(13,5)) (1)
4,4,10-Trimethyl-1,11-bis(3-methylbut-2-en-1-yl)-10-(4-methylpent-3-en-1-yl)-9-(2-methylpropanoyl)-3-oxatricyclo[7.3.1.0²,⁷]trideca-2(7),5-diene-8,13-dione (1)
2-{[3,4-dihydroxy-5,6-bis({[(2E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoyl]oxy})oxan-2-yl]methoxy}-4,5-dihydroxy-6-(hydroxymethyl)oxan-3-yl (2E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoate (1)
{2-[(7Z,10Z,13Z,16Z)-docosa-7,10,13,16-tetraenoyloxy]-3-(tetracosanoyloxy)propoxy}[2-(methylamino)ethoxy]phosphinic acid (1)
TG(20:1(11Z)/22:2(13Z,16Z)/20:2(11Z,14Z)) (1)
1-(8-{[6-({[3,5-dihydroxy-6-(hydroxymethyl)-4-{[3,4,5-trihydroxy-6-({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)oxan-2-yl]oxy}oxan-2-yl]oxy}methyl)-3,4,5-trihydroxyoxan-2-yl]oxy}-1-hydroxy-6-methoxy-3-methylnaphthalen-2-yl)ethan-1-one (1)
2-amino-4-({1-[(carboxymethyl)-C-hydroxycarbonimidoyl]-2-({[3-(methylsulfanyl)propyl]thio(carbonoimidyl)}sulfanyl)ethyl}-C-hydroxycarbonimidoyl)butanoic acid (1)
(2E)-N-{2-[5,5'-dihydroxy-3'-(2-{[(2E)-1-hydroxy-3-(4-hydroxy-3-methoxyphenyl)prop-2-en-1-ylidene]amino}ethyl)-1H,1'H-[4,4'-biindole]-3-yl]ethyl}-3-(4-hydroxyphenyl)prop-2-enimidic acid (1)
(2R,3R)-2-(3,4-Dihydroxyphenyl)-6-[(2R,3R,4S)-2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-3-(3,4,5-trihydroxybenzoyloxy)-3,4-dihydro-2H-1-benzopyran-4-yl]-5,7-dihydroxy-3,4-dihydro-2H-1-benzopyran-3-yl 3,4,5-trihydroxybenzoate (1)
2-(Hydroxymethyl)-6-[(3,4,5-trihydroxy-6-{[16-hydroxy-2,6,6,10,11-pentamethyl-14-(6-methyl-2-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}hept-5-en-2-yl)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-5-yl]oxy}oxan-2-yl)methoxy]oxane-3,4,5-triol (1)
6-(16'-{[3,4-dihydroxy-6-(hydroxymethyl)-5-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-5,7',9',13'-tetramethyl-5'-oxaspiro[oxane-2,6'-pentacyclo[10.8.0.0²,⁹.0⁴,⁸.0¹³,¹⁸]icosane]-15'-oloxy)-3,4,5-trihydroxyoxane-2-carboxylic acid (1)
3-[({2-[(3-{[4-({[({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)-1,2-dihydroxy-3,3-dimethylbutylidene]amino}-1-hydroxypropylidene)amino]ethyl}sulfanyl)carbonyl]-4-hydroxy-4-phenylbutanoic acid (1)
4-({[({[5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)-2-hydroxy-N-[2-({2-[(11E)-icos-11-enoylsulfanyl]ethyl}-C-hydroxycarbonimidoyl)ethyl]-3,3-dimethylbutanimidic acid (1)
(1R,2R,3R,11S,12S,14R,26R)-5,6',7',12-tetrahydroxy-6-methoxy-7,21,30-trimethyl-27-oxo-3',4'-dihydro-2'H-17,19,28-trioxa-24-thia-13,30-diazaspiro[heptacyclo[12.9.6.1³,¹¹.0²,¹³.0⁴,⁹.0¹⁵,²³.0¹⁶,²⁰]triacontane-26,1'-isoquinoline]-4(9),5,7,15(23),16(20),21-hexaen-22-yl acetate (1)
Ps(14:1(9z)/20:5(5z,8z,11z,14z,17z)) (1)
2-[6'-(5,7-Dihydroxy-4-oxo-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4H-chromen-2-yl)-2',3',4,4',5,6-hexahydroxy-[1,1'-biphenyl]-2-yl]-5,7-dihydroxy-3,4-dihydro-2H-1-benzopyran-3-yl 3,4,5-trihydroxybenzoate (1)
Heptacosane-6,8-dione (1)
3,4,5-trihydroxy-6-{[5-hydroxy-14-(1-hydroxy-6-methylhept-5-en-2-yl)-2,11,15-trimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-1(10)-en-8-yl]oxy}oxane-2-carboxylic acid (1)
2-[(7-{[4,5-dihydroxy-6-(hydroxymethyl)-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-5-hydroxy-2-(4-hydroxyphenyl)-4-oxo-4H-chromen-3-yl)oxy]-4,5-dihydroxy-6-(hydroxymethyl)oxan-3-yl (2E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoate (1)
2-[2-({7-[(3-carboxy-3-{2-[(6-carboxy-3,4,5-trihydroxyoxan-2-yl)oxy]-2-oxoethyl}propanoyl)oxy]-11,16,18-trihydroxy-19-[(1-hydroxyethylidene)amino]-5,9-dimethylicosan-6-yl}oxy)-2-oxoethyl]butanedioic acid (1)
(6-{4-[2-(3,4-dihydroxyphenyl)-3,5,7-trihydroxy-3,4-dihydro-2H-1-benzopyran-8-yl]-3,5,7-trihydroxy-2-(3-hydroxyphenyl)-3,4-dihydro-2H-1-benzopyran-8-yl}-4,5-dihydroxy-2-(hydroxymethyl)oxan-3-yl)oxidanesulfonic acid (1)
[6,7,8,11,12,13,23-heptahydroxy-3,16-dioxo-21-(3,4,5-trihydroxybenzoyloxy)-2,17,20-trioxatetracyclo[17.3.1.0⁴,⁹.0¹⁰,¹⁵]tricosa-4,6,8,10,12,14-hexaen-22-yl]oxidanesulfonic acid (1)
N-Isobutyl-2E,4Z-octadecadienoyl amine (1)
PA(O-16:0/18:0) (1)
(4,5-dihydroxy-2-{[(1E)-3-hydroxy-3-methyl-1-[(sulfooxy)imino]pentyl]sulfanyl}-6-(hydroxymethyl)oxan-3-yl)oxidanesulfonic acid (1)
{[(2R,3R,5R)-3,4-dihydroxy-5-(2-hydroxy-4-imino-1,4-dihydropyrimidin-1-yl)oxolan-2-yl]methoxy}({hydroxy[(2R)-3-[(14-methylpentadecanoyl)oxy]-2-[(9Z,11Z)-octadeca-9,11-dienoyloxy]propoxy]phosphoryl}oxy)phosphinic acid (1)
{4-[2-(3,5-dihydroxyphenyl)-3,5,7-trihydroxy-3,4-dihydro-2H-1-benzopyran-8-yl]-5,7-dihydroxy-2-(3-hydroxyphenyl)-3,4-dihydro-2H-1-benzopyran-3-yl}oxidanesulfonic acid (1)
(2S,15R)-14-(5-ethyl-6-methylheptan-2-yl)-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-7-ylium-5-olate (1)
[(2S,15R)-14-{4-[(carboxymethyl)-C-hydroxycarbonimidoyl]butan-2-yl}-2,15-dimethyl-5-(sulfooxy)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-9-yl]oxidanyl (1)

Study type

Transcription profiling by array (12)
Methylation profiling by array (7)
RNA-seq of coding RNA (5)
Human - Single-cell sequencing (1)
Ribo-seq (1)
Other (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (90)
2022 (90)
2021 (89)
2024 (84)
2023 (80)
2020 (67)
2019 (39)
2018 (33)
2013 (29)
2015 (23)
2017 (21)
2012 (21)
2014 (18)
2016 (17)
2010 (16)
2026 (16)
2011 (12)
2009 (8)
2008 (4)
2007 (2)

Lab affiliation

Emory University (2)
All India Institute of Medical Sciences, New Delhi, India (1)
Cardiovascular Research Institute (1)
Core Facility Proteomics Hannover Medical School Carl-Neuberg-Str. 1 30625 Hannover Germany (1)
Group Leader, Vector Borne Diseases International Centre for Genetic Engineering and Biotechnology Aruna Asaf Ali Marg 110067 New Delhi, India (1)
KIIT Deemed to be University (1)
Reserch Scientist, Institute of Bioinformatics, Bangalore (1)

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In-depth Mass Spectrometry Analysis Reveals the Plasma Proteomic and N-glycoproteomic Impact of an Amish Enriched Cardioprotective Variant in B4GALT1

Proteome and N-glycoproteome in human plasma were analyzed and compared between B4GALT1 WT and N352S genotypes. The results showed that N352S significantly decreased galactosylation for a wide range of proteins, especially apoB and fibrinogen, which may be associated with the decreased LDL-c level o...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2022-12-29 | MSV000090976 | MassIVE

Identification of full length, splicing and cleavage products of SufB protein of SUF-complex of Mycobacterium tuberculosis

SufB, an Fe-S cluster assembly protein is critical for mycobacterial survival and virulence; but as a protein still at its nascent stage. SufB is interrupted by an intein sequence, which excises itself out from the full length protein post-translationally. Intein splicing is crucial for the activati...

ORGANISM(S): Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis

2022-02-15 | PXD015199 | Pride

Urinary Glycoproteomic profiling of Non-Muscle Invasive and Muscle Invasive Bladder Carcinoma Patients reveals distinct N-glycosylation pattern of CD44, MGAM and GINM1

Clinical management of bladder carcinomas (BC) remains a major challenge and demands comprehensive multi-omics analysis for better stratification of the disease. Identification of patients on risk requires identification of signatures predicting prognosis risk of the patients. Understanding the mole...

ORGANISM(S): Homo sapiens (Human)

2020-09-10 | PXD020078 | Pride

Urothelial carcinoma n-linked glycoproteomics urine proteomics nmibc mibc

4-Chloro-N-(3-chloro-phen-yl)benzamide.

Not available

S-EPMC2970278 | biostudies-literature

Deciphering Z-scheme Charge Transfer Dynamics in Heterostructure NiFe-LDH/N-rGO/g-C₃N₄ Nanocomposite for Photocatalytic Pollutant Removal and Water Splitting Reactions.

Not available

S-EPMC6385283 | biostudies-literature

SufB intein splicing in Mycobacterium tuberculosis is influenced by two remote conserved N-extein histidines.

Not available

S-EPMC8891592 | biostudies-literature