Needles - OmicsDI

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Unknown (1264)
Genomics (324)
Transcriptomics (257)
Proteomics (71)
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Organisms

Mus musculus (100)
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Melampsora larici-populina 98AG31 (92)
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Repository

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Tissue

Cell culture (9)
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Technology Type

Mass Spectrometry (47)
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University College Dublin Animal Research Ethics Committee approval, a licence from the Department of Health (B100/3525) and explicit owner/trainer informed consent were obtained for the use of all horses and procedures in this study. (1)
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CHEBI ID

CHEBI:18211 (9)
CHEBI:15428 (8)
CHEBI:27897 (8)
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CHEBI:22660 (7)
CHEBI:15746 (7)
CHEBI:15891 (7)
CHEBI:37024 (7)
CHEBI:25094 (7)
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CHEBI:670 (6)
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CHEBI:66848 (6)
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CHEBI:17126 (6)
CHEBI:27570 (6)
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CHEBI:28300 (6)
CHEBI:16610 (6)
CHEBI:28790 (6)
CHEBI:27266 (6)
CHEBI:73067 (6)

Metabolite Name

Spermine (5)
Carnosine (5)
Serotonin (5)
Taurine (5)
Citric acid (5)
Spermidine (5)
Histamine (5)
Creatinine (5)
Phloretin (4)
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Putrescine (4)
Uridine (4)
Total DMA (3)
T4-OH-Pro (3)
PEA (3)
Nitro-Tyr (3)
Met-SO (3)
C4-OH-Pro (3)
Alpha-AAA (3)
Ac-Orn (3)
Orn (3)
Cit (3)
Okanin 4'-O-(2''-O-caffeoyl-6''-O-p-coumaroylglucoside) (3)
Dalpanin (3)
13E-Docosenamide (3)
Val (3)
Tyr (3)
Trp (3)
Thr (3)
Ser (3)

First Public Date

2017 (106)
2019 (26)
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Classification

viruses (1)
bacteria (1)

Study status

Recruiting (2)
Completed (1)

Study type

Transcription profiling by array (114)
RNA-seq of coding RNA (60)
RNA-seq of coding RNA from single cells (18)
ChIP-seq (13)
RNA-seq of non coding RNA (9)
RNA-seq of total RNA (8)
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Interventional (3)
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Animal - High-throughput sequencing (2)
Methylation profiling by array (2)
Baseline (1)
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Release Date

2022 (176)
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2024 (134)
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2019 (92)
2018 (74)
2015 (68)
2016 (66)
2017 (59)
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2013 (50)
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2012 (28)
2010 (25)
2011 (23)
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2007 (9)
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2005 (5)
2004 (3)
2003 (3)
2002 (2)
2000 (2)

Lab affiliation

Whitehead Institute for Biomedical Research and Massachusetts Institute of Technology (4)
Associate Professor, Whitehead Institute for Biomedical Research and Massachusetts Institute of Technology (2)
Director, Proteome Center Rostock, University of Rostock, Germany (2)
Molecular Plant Biology, Department of Biochemistry, University of Turku, Finland (2)
Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada. (1)
Department of Biochemical Sciences, Sapienza University of Rome, Rome, Italy (1)
Department of Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada. Proteomics and Metabolomics Core Facility, Life Sciences Institute, University of British Columbia, Vancouver, BC, V6T 2A1, Canada. (1)
Department of Biochemistry and Molecular Biology, the Institute for Medical Research Israel ג€“ Canada, Faculty of Medicine, The Hebrew University of Jerusalem, Jerusalem, Israel, 9112001. (1)
Department of Biochemistry, University of Missouri, Columbia, Missouri (1)
Department of Biological Chemistry, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA (1)
Department of Biology, Maynooth University, Maynooth, Co. Kildare, Ireland. (1)
Department of Chemistry, Institute of Chemistry and Biochemistry, Technical University of Darmstadt, 64287 Darmstadt (1)
Department of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, UK Kavli Institute for NanoScience Discovery, Dorothy Crowfoot Hodgkin Building, Oxford OX1 3QU, UK (1)
Department of Medicine Renal diseases and Hypertension (1)
European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany. (1)
Hebei agricultural university (1)
Helmholtz Munich (1)
IBMC (1)
Institute for Genetics, Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases (CECAD), Cologne Germany; Center for Molecular Medicine (CMMC), University of Cologne, 50931 Cologne, Germany (1)
Institute for Genetics, Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases (CECAD), Cologne, Germany (1)
Institute of Virology, Technical University of Munich, Munich, Germany. (1)
Instituto de Agricultura Sostenible-CSIC Av. Menéndez Pidal s/n Campus Alameda del Obispo Apartado 4084, 14080 Córdoba, Spain (1)
Lunenfeld-Tanenbaum Research Institute and Department of Molecular Genetics, University of Toronto, Toronto, ON M5G 1X5, Canada (1)
Marine Chemistry Geochemistry, Woods Hole Oceanographic Institution, US (1)
Massachusetts Institute of Technology, Department of Biological Engineering, David H Koch Institute for Integrative Cancer Research (1)
Medizinisches Proteom-Center, Medical Faculty, Ruhr-University Bochum, 44801 Bochum, Germany (1)
Plant Physiology, Department of Organisms and Systems Biology, University of Oviedo, Oviedo, Spain. University Institute of Biotechnology of Asturias, University of Oviedo, Oviedo, Spain. (1)
Plant Physiology, Department of Organisms and Systems Biology, University of Oviedo, Spain (1)
Professor of Chemical Biology, Imperial College London; Satellite Group Leader, Francis Crick Institute; Founder & SAB, Myricx Pharma Ltd; Room 301B, Molecular Sciences Research Hub, White City Campus 82 Wood Lane, London W12 0BZ, UK (1)
Protein Biochemistry and Structural Biology Laboratory, National Institute of Malaria Research (ICMR), New Delhi, INDIA (1)

Location

United States (3)

Keyword

Irreversible Electroporation Ablation (1)
15-001 (1)

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Transcriptome and Metabolome Analyses Reveal Differences in Terpenoid and Flavonoid Biosynthesis in Cryptomeria fortunei Needles Across Different Seasons

Cryptomeria fortunei (Chinese cedar) has outstanding medicinal value due to its abundant flavonoid and terpenoid contents. The metabolite contents of C. fortunei needles differ across different seasons. However, the biosynthetic mechanism of these differentially synthesized meta...

2022-08-12 | MTBLS4099 | MetaboLights

Untargeted metabolomics of Pinus pinaster needles under heat and drought stress

Not available

ORGANISM(S): Pinus pinaster

ST002198 | MetabolomicsWorkbench

Adult Needles timelapse and whorl - Los Reales 2012

Transcriptional profiling of Pinus pinaster adult needles in a complete year. The needles were isolated by year emergence (whorl) in four groups. 0 (2012), 1 (2011), 2 (2010) and 3 (2009). The samples were harvested at 1245 m of altitude at Los Reales de Sierra Bermeja (Spain) (30S X:303.095 Y:4.039...

ORGANISM(S): Pinus pinaster

2015-02-27 | E-GEOD-55868 | biostudies-arrayexpress

Transcription profiling of spruce (Picea glauca) secondary xylem and needles

The experiment consists in the comparison of 2 tissues: secondary xylem vs needles.

ORGANISM(S): Picea glauca

2008-07-14 | E-MEXP-1460 | biostudies-arrayexpress

Transcriptome and metabolome changes in Chinese cedar during cold acclimation reveal the roles of flavonoids in needle discoloration and cold resistance

Cryptomeria fortunei growth and development are usually affected by low temperatures. Despite the evergreen nature of this species, most needles turn yellowish-brown in cold winters. The underlying discoloration mechanisms that cause this phenomenon in response to cold acclimation remain...

2022-08-12 | MTBLS3184 | MetaboLights

Norway spruce needles and seeds

Norway spruce needles and seeds Raw sequence reads

PRJNA1072281 | ENA

Gymnopus androsaceus growth on pine needles

PRJNA579340 | ENA

Chalara longipesis growth on pine needles

PRJNA578914 | ENA

Mycobiota of Pinus sylvestris needles in Slovakia

Mycobiota of Pinus sylvestris needles in Slovakia Metagenome

PRJNA1455419 | ENA

Endophytic fungi in Nepalese Taxus needles