Nelson L L - OmicsDI

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Unknown (4155)
Transcriptomics (251)
Proteomics (82)
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Other (1)
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Organisms

Homo sapiens (149)
Mus musculus (76)
Schizosaccharomyces pombe (52)
Oryza sativa Indica Group (52)
Saccharomyces cerevisiae (11)
Drosophila melanogaster (8)
Arabidopsis thaliana (8)
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cellular organisms (1)

Organisms

Homo sapiens (2)

Repository

biostudies-arrayexpress (278)
pride (52)
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Tissue

Cell culture (12)
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Disease

Human immunodeficiency virus infectious disease (2)
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Disease free (2)
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None (1)
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Pancreatic cancer (1)
Tuberculosis (1)
Malignant neoplasm of ovary (1)

Technology Type

Mass Spectrometry (52)
Shotgun proteomics (35)
Mass spectrometry (11)
Bottom-up proteomics (9)
Affinity purification coupled with mass spectrometry proteomics (8)
NMR spectroscopy (2)
Data-dependent acquisition (2)
Illumina OncoArray (1)
SWATH MS (1)
Gel-based experiment (1)
Top-down proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Q Exactive (10)
Illumina HiSeq 4000 (7)
AB SOLiD 4 System (6)
NextSeq 500 (5)
Q Exactive Plus (4)
Liquid Chromatography MS - negative - reverse phase (3)
Liquid Chromatography MS - negative - hilic (3)
Liquid Chromatography MS - positive - hilic (3)
LTQ Orbitrap Elite (2)
Orbitrap Exploris 240 (2)
MS Imaging - (2)
Liquid Chromatography MS - positive - reverse phase (2)
Whole Transcriptome v2 kit (1)
BSL2 Laboratory (1)
C1 Fluidigm (1)
Illumina NextSeq500 (1)
GenePix 4000A [Axon Instruments] (1)
Illumina Genome Analyzer II (1)
Illumina NovaSeq X (1)
Illumina MiSeq (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
LTQ FT (1)
Various instruments (1)
LTQ Orbitrap Velos (1)
Orbitrap Fusion (1)
Orbitrap Fusion Lumos (1)
Varian (1)
Bruker (1)
Liquid Chromatography MS - (1)

Publication Date

2010 (56)
2014 (37)
2013 (31)
2012 (26)
2008 (25)
2015 (24)
2021 (22)
2024 (21)
2016 (20)
2011 (15)
2009 (12)
2022 (12)
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2020 (11)
2017 (11)
2007 (10)
2005 (9)
2025 (9)
2026 (6)
2019 (6)
2006 (3)
2018 (1)

UNIPROT ID/AC

P38936 (2)
A0QXZ5_MYCS2 (2)
A0QP78_MYCS2 (2)
A0R0V8_MYCS2 (2)
A0R178_MYCS2 (2)
A0QY12_MYCS2 (2)
RBFA_MYCS2 (2)
A0QQD1_MYCS2 (2)
A0QYE8_MYCS2 (2)
246196.MSMEI_0784 (2)
A0R2N4_MYCS2 (2)
A0QTL2_MYCS2 (2)
A0QZA6_MYCS2 (2)
A0QSZ7_MYCS2 (2)
PSA_MYCS2 (2)
O95257 (1)
P24522 (1)
O75293 (1)
Q6I9V6 (1)
O43524 (1)
Q9Y478 (1)
P54646 (1)
P16278 (1)
O14920 (1)
P45983 (1)
Q13315 (1)
Q16539 (1)
P31749 (1)
P04637 (1)
Q00987 (1)

CHEBI ID

CHEBI:15891 (4)
CHEBI:16449 (4)
CHEBI:17822 (4)
CHEBI:6650 (4)
CHEBI:16811 (4)
CHEBI:18237 (4)
CHEBI:29016 (4)
CHEBI:27570 (4)
CHEBI:78320 (4)
CHEBI:21557 (3)
CHEBI:73705 (3)
CHEBI:48430 (3)
CHEBI:9410 (3)
CHEBI:16525 (3)
CHEBI:80774 (3)
CHEBI:28865 (3)
CHEBI:28834 (3)
CHEBI:9907 (3)
CHEBI:16359 (3)
CHEBI:17775 (3)
CHEBI:15611 (3)
CHEBI:28683 (3)
CHEBI:16668 (3)
CHEBI:15356 (3)
CHEBI:30769 (3)
CHEBI:15354 (3)
CHEBI:26523 (2)
CHEBI:16991 (2)
CHEBI:33709 (1)
CHEBI:5931 (1)

Metabolite Name

Alanine (5)
Taurine (4)
Methionine (4)
Lysine (4)
Leucine (4)
Lactate (4)
N-acetylhistidine (3)
Cholesterol (3)
Urea (3)
Valine (3)
Tyrosine (3)
Tryptophan (3)
Threonine (3)
Serine (3)
Pyruvate (3)
Proline (3)
Phenylalanine (3)
Ornithine (3)
Isoleucine (3)
Glycine (3)
Glutamine (3)
Glutamate (3)
Glucose (3)
Cysteine (3)
Creatinine (3)
Creatine (3)
Allantoin (3)
Adenine (3)
3-phosphoglycerate (3)
Cortisol (2)

First Public Date

2014 (2)
2023 (1)
2020 (1)

Modelling Approach

Ordinary differential equation model (6)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (4)
College of Life Sciences, University of Dundee (2)
ARC CoE Plant Energy Biology, The University of Western Australia (2)
J. Craig Venter Institute, Rockville, MD 20850 (2)
Department of Microbiology & Immunology, Cornell University College of Veterinary Medicine (1)
Associate Professor, Department of Neurology, Yale University School of Medicine (1)
Srikant Rangaraju, MD MS Associate Professor Department of Neurology Vascular Neurology Division Emory University (1)
Institute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne, United Kingdom (1)
University of Minnesota, Twin-Cities, Pharmacology Department (1)
University of Minnesota, Twin-cities Pharmacology Department (1)
Leibniz-Institut für Analytische Wissenschaften - ISAS - e.V., Otto-Hahn-Str. 6b, 44227 Dortmund, Germany. Tel: ++49-231-13924232; Fax: ++49-231-13924850 (1)
Sir Peter MacCallum Department of Oncology, Peter MacCallum Cancer Centre, The University of Melbourne, Victoria 3000, Australia (1)
Leibniz-Institut für Analytische Wissenschaften - ISAS - e.V., Otto-Hahn-Str. 6b, 44227 Dortmund, Germany. Tel: ++49-231-13924232; Fax: ++49-231-13924850 (1)
Senior Researcher - Principal Investigator, Computational and Chemical Biology, Istituto Italiano di Tecnologia Via Morego, 30 16163 Genova - Italy Tel: +39 010 28961 - C.F.: 97329350587 - P.Iva: 09198791007 (1)
Hepatology Program, CIMA, University of Navarra. Avda. Pio XII, n55. 31008 Pamplona, Spain. (1)
Biochemistry and Molecular Biology, UTMB, Galveston, TX (1)
DIRECTOR, THE PICOWER INSTITUTE FOR LEARNING AND MEMORYAT MIT PICOWER PROFESSOR OF NEUROSCIENCE, DEPARTMENT OF BRAIN AND COGNITIVE SCIENCES SENIOR ASSOCIATE MEMBER, BROAD INSTITUTE (1)
Computational Biology Division, Department of Integrative Biomedical Sciences, IDM, University of Cape Town, South Africa (1)
Department of Neurology Associate Professor (1)
University of Copenhagen Department of Biomedical Sciences Blegdamsvej 3B København N, DK-2200 (1)
Department of Molecular Physiology and Biological Physics University of Virginia School of Medicine Charlottesville, VA, USA 22908 (1)
1. University of Victoria Genome BC Proteomics Centre, University of Victoria, Victoria, British Columbia, Canada 2. Segal Cancer Proteomics Centre, Lady Davis Institute, Jewish General Hospital, McGill University, Montreal, Quebec, Canada 3. Department of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia, Canada 4. Gerald Bronfman Department of Oncology, Jewish General Hospital, Montreal, Quebec, Canada (1)
Department of Pathology and Cancer Center, Stony Brook University, Stony Brook, NY 11794 (1)
GIGA-Molecular Biology of Diseases-Viral Interactomes Network, Unniversité de Liège, Belgium (1)
Children's Medical Research Institute. Telomere Length Regulation Unit. (1)
Dipartimento di medicina Traslazionale, Università del Piemonte Orientale (1)
School of Biological Sciences, University of Auckland (1)
Department of Neurology, Yale University, New Haven, CT, USA (1)
Department of Biochemistry and Cell Biology, Boston University Chobanian and Avedisian School of Medicine (1)
1 Institute for Research in Immunology and Cancer, Université de Montréal, Montréal, Québec, Canada. 2 Department of Chemistry, Université de Montréal, Montréal, Québec, Canada. 3 Department of Biochemistry and Molecular Medicine, Université de Montréal, Montréal, Québec, Canada. (1)

IsPrivate

False (6)

Model Flag

Non Miriam (1)

Study type

Transcription profiling by array (158)
RNA-seq of coding RNA (28)
ChIP-seq (23)
Methylation profiling by array (13)
RNA-seq of non coding RNA (11)
Comparative genomic hybridization by array (8)
Unknown experiment type (6)
Transcription profiling by tiling array (6)
Genotyping by array (5)
ChIP-chip by tiling array (3)
Other (3)
RNA-seq of coding RNA from single cells (3)
Cell line - High-throughput sequencing (2)
Transcription profiling by RT-PCR (2)
Methylation profiling by high throughput sequencing (2)
Transcription profiling by SAGE (1)
ChIP-chip by array (1)
RIP-seq (1)
DNA-seq (1)
Proteomic profiling by array (1)

Release Date

2022 (454)
2021 (405)
2025 (388)
2023 (383)
2024 (371)
2019 (316)
2020 (298)
2018 (241)
2016 (224)
2015 (201)
2017 (195)
2014 (185)
2012 (134)
2013 (132)
2011 (119)
2010 (119)
2026 (57)
2009 (55)
2008 (54)
2007 (29)
2006 (21)
2005 (18)
2004 (10)
2003 (7)
2002 (5)
2001 (5)
1999 (5)
1998 (1)

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Whole-Genome Sequences of Three Plant Growth-Promoting Rhizobacteria Isolated from Solanum tuberosum L. Rhizosphere in Tanzania.

Not available

S-EPMC7225545 | biostudies-literature

Multilocation dataset on seed Fe and Zn contents of bean (Phaseolus vulgaris L.) genotypes grown in Tanzania.

Not available

S-EPMC7276388 | biostudies-literature

Specific sequence determinants of miR-15/107 microRNA gene group targets

Using anti-Argonaute (anti-AGO) antibody co-immunoprecipitation, followed by microarray analyses and downstream bioinformatics, ‘RIP-Chip’ experiments enable direct analyses of miRNA targets. The analyses support four major findings: (i) RIP-Chip studies correlated with total input mRNA profiling pr...

ORGANISM(S): Homo sapiens

2012-12-11 | E-GEOD-42823 | biostudies-arrayexpress

Nearly identical paralogs: implications for maize (Zea mays L.) genome evolution.

Not available

S-EPMC1774996 | biostudies-literature

Phenolic and Nonpolar Fractions of Elaeagnus rhamnoides (L.) A. Nelson Extracts as Virulence Modulators-In Vitro Study on Bacteria, Fungi, and Epithelial Cells.

Not available

S-EPMC6099406 | biostudies-literature

Erica L. (Ericaceae): homonyms amongst published names for African species and proposed replacement names.

Not available

S-EPMC10753580 | biostudies-literature

l-Valine ethyl ester hydro-chloride.

Not available

S-EPMC12810297 | biostudies-literature

RNA-seq of Pseudomonas putida KT2440 and the derived strain P. putida pig21 treated with 1-octanol and PQS (Pseudomonas quinolone signal), causing chemical membrane stress.

Pseudomonas species have become promising cell factories for the production of natural products due to their inherent robustness. Here, we explored membrane adaptations of Pseudomonas putida KT2440, in particular outer membrane vesicle (OMV) formation in response to 1-octanol, PQS and prodigiosin, ...

ORGANISM(S): Pseudomonas putida KT2440

2023-01-09 | E-MTAB-12470 | biostudies-arrayexpress

A prospective descriptive study on prevalence of catatonia and correlates in an acute mental health unit in Nelson Mandela Bay, South Africa.

Not available

S-EPMC8903294 | biostudies-literature

A genome-wide approach in Arabidopsis thaliana to assess the toxicity of cadmium sulfide quantum dots

Cadmium sulfide quantum dots (CdS QDs) are widely used in novel equipment. The relevance of the research lies in the need to develop risk assessments for nanomaterials, using as basis a model plant species. Here a screen of Arabidopsis thaliana mutant lines was performed in an attempt to identify pl...

ORGANISM(S): Arabidopsis thaliana

2014-06-15 | E-GEOD-53989 | biostudies-arrayexpress

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4553 Results

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