Neoplasia - OmicsDI

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Transcriptomics (10281)
Unknown (6362)
Genomics (5654)
Proteomics (1331)
Metabolomics (328)
Clinical (193)
Multiomics (64)
Other (64)
Methylation profiling (43)
Models (16)
Genomic (5)

Organisms

Homo sapiens (12497)
Mus musculus (2701)
Rattus norvegicus (144)
Caenorhabditis elegans (63)
Drosophila melanogaster (63)
Canis lupus familiaris (54)
Danio rerio (36)
Gallus gallus (32)
Saccharomyces cerevisiae (32)
Arabidopsis thaliana (28)
Streptomyces coelicolor (19)
Sus scrofa (11)
Escherichia coli (10)
Zea mays (9)
Listeria monocytogenes (8)
Streptomyces venezuelae (8)
Bos taurus (7)
synthetic construct (7)
Ovis aries (6)
Helicobacter pylori (6)
Pimephales promelas (5)
Oryza sativa (5)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (4)
Schizosaccharomyces pombe (4)
Campylobacter jejuni (4)
Tetrahymena thermophila (3)
Gossypium hirsutum (3)
Panax ginseng (3)
unidentified (3)
Mammalia (1)

Organisms

Homo sapiens (264)
Mus musculus (217)
Rattus norvegicus (7)
Canis lupus familiaris (4)
human vaginal metagenome (3)
Danio rerio (3)
Mya arenaria (2)
Homo sapiens environmental sample (2)
Drosophila melanogaster (2)
Macaca mulatta (2)
mouse gut metagenome (2)
Gallus gallus (2)
Mastomys natalensis (1)
Human papillomavirus (1)
Clinocardium nuttallii (1)
Nematostella vectensis (1)
human skin metagenome (1)
Equus caballus (1)
Staphylococcus epidermidis (1)
Homo (1)
human gut metagenome (1)
metagenome (1)
unidentified (1)

Repository

biostudies-arrayexpress (10457)
EGA (4411)
MassIVE (749)
ENA (649)
geo (458)
MetaboLights (327)
jPOST (206)
iProX (153)
PeptideAtlas (99)
pride (56)
GPMDB (41)
PanoramaPublic (41)
EVA (39)
LINCS (23)
Cell Collective (14)
PAXDB (12)
dbGaP (5)
ExpressionAtlas (4)
BioModels (2)
GNPS (1)

Tissue

Others (67)
Blood serum (7)
Female Reproductive System (6)
Epithelial cell (6)
Liver (5)
Cell culture (5)
Colon (5)
Heart (4)
Lung (4)
Male Reproductive System (4)
Kidney (3)
Blood plasma (3)
Liver (3)
Breast (2)
Pancreas (2)
Blood (2)
Bone marrow (2)
Cell suspension culture (2)
Monocyte (2)
Pancreas (2)
Permanent cell line cell (2)
Prostate gland (2)
Adrenal Gland (1)
Digestive System (1)
Adipose tissue (1)
Adrenal gland (1)
B cell (1)
Bile (1)
Blood cell (1)
Brain (1)

Disease

Normal (76)
Oligodendroglioma (4)
Astrocytoma (3)
Unknown (2)
Oral squamous cell carcinoma (2)
Gliosarcoma (2)
Vulvar intraepithelial neoplasia (1)
MPIN (mouse prostatic intraepithelial neoplasia) (1)
Mixed (1)
Unclassified (1)
Endometrium adenocarcinoma (1)
Gastric tubular adenocarcinoma (1)
Undifferentiated carcinoma (1)
Amelanotic melanoma (1)
Salivary gland squamous cell carcinoma (1)
Endometrial endometrioid adenocarcinoma, variant with squamous differentiation (1)
Ovarian endometrioid adenocarcinoma (1)
B-cell prolymphocytic leukemia (1)
Childhood acute monocytic leukemia (1)
Mucinous gastric adenocarcinoma (1)
Hereditary thyroid gland medullary carcinoma (1)
Extrarenal rhabdoid tumor (1)
Meningioma (1)
Leiomyoma, epithelioid (1)
Primary effusion lymphoma (1)
Cecum adenocarcinoma (1)
Bronchioloalveolar carcinoma (1)
Adenosquamous lung carcinoma (1)
Pancreatic adenosquamous carcinoma (1)
Laryngeal squamous cell carcinoma (1)

Technology Type

Illumina HiSeq 2000 (115)
ILLUMINA, Illumina HiSeq 2000 (30)
Illumina HiSeq 2500 (23)
Illumina HiSeq 2000, ILLUMINA (23)
Illumina MiSeq (17)
ILLUMINA, Illumina HiSeq 2500 (16)
Illumina HiSeq 2500, ILLUMINA (15)
Illumina Genome Analyzer II (12)
Illumina HiSeq 2500, Illumina HiSeq 2000 (8)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (7)
ILLUMINA, HiSeq X Ten (5)
ILLUMINA, NextSeq 500 (5)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (5)
HiSeq X Ten, ILLUMINA (4)
Illumina MiSeq, ILLUMINA (3)
Illumina HiSeq 2500 (ILLUMINA) (3)
HiSeq X Ten (3)
Illumina HiSeq 2000, Illumina MiSeq (3)
Illumina HiSeq 2000, ILLUMINA, Illumina HiSeq 2500 (3)
Illumina HiSeq 2000, Illumina Genome Analyzer II (3)
ILLUMINA, Illumina HiSeq 2500, HiSeq X Ten, Illumina HiSeq 2000 (2)
NextSeq 500, ILLUMINA (2)
NextSeq 500, Illumina HiSeq 2500, ILLUMINA (2)
Illumina HiSeq 4000, ILLUMINA (2)
Illumina HiSeq 4000, Illumina HiSeq 2500, ILLUMINA (2)
Aperio (2)
Illumina HiSeq 2500, Illumina MiSeq (2)
454 GS FLX Titanium, Illumina HiSeq 2000 (2)
ILLUMINA, Illumina HiSeq 2000 (ILLUMINA), Illumina HiSeq 2000 (2)
Illumina HiSeq 2000, Illumina Genome Analyzer II, ILLUMINA (2)

Instrument Platform

Illumina NovaSeq 6000 (299)
NextSeq 500 (173)
Illumina HiSeq 2500 (134)
Illumina HiSeq 2000 (115)
Illumina HiSeq 4000 (112)
NextSeq 550 (50)
Illumina NovaSeq X (33)
Illumina MiSeq (29)
NextSeq 2000 (28)
Illumina HiSeq 1500 (20)
DNBSEQ-G400 (16)
Illumina Genome Analyzer IIx (14)
GenePix 4000B [Axon Instruments] (11)
NA (11)
Scanning hardware (9)
Illumina HiSeq 3000 (9)
DNBSEQ-T7 (7)
HiSeq X Ten (7)
ScanArray 5000 [PerkinElmer] (6)
BGISEQ-500 (6)
ScanArray 4000 [PerkinElmer] (5)
Generation III Array Scanner [Amersham] (5)
418 [Affymetrix] (5)
Illumina Genome Analyzer II (5)
None (5)
Ion Torrent Proton (5)
Compute Cluster (4)
Gene Titan (4)
Flow Cytometer (4)
Illumina HiSeq X (4)

Publication Date

2013 (1341)
2014 (1282)
2012 (1182)
2015 (1131)
2011 (1004)
2010 (965)
2016 (923)
2008 (624)
2025 (458)
2009 (454)
2023 (349)
2021 (323)
2020 (309)
2024 (298)
2026 (279)
2022 (279)
2019 (256)
2007 (250)
2018 (247)
2017 (237)
2005 (135)
2006 (95)
2004 (18)
2003 (6)
2002 (5)
2027 (1)

UNIPROT ID/AC

1433B_HUMAN (12)
1433E_HUMAN (12)
1433F_HUMAN (12)
1433G_HUMAN (12)
1433S_HUMAN (12)
1433T_HUMAN (12)
1433Z_HUMAN (12)
2AAA_HUMAN (12)
3HIDH_HUMAN (12)
4F2_HUMAN (12)
5NTD_HUMAN (12)
9606.ENSP00000291295 (12)
9606.ENSP00000330842 (12)
9606.ENSP00000347168 (12)
9606.ENSP00000348924 (12)
9606.ENSP00000349467 (12)
P08646 (1)
Q504U8 (1)
P61981 (1)
P62714 (1)
P30086 (1)
P24941 (1)
P38936 (1)
P17252 (1)
P24864 (1)
P01133 (1)
P31749 (1)
P04049 (1)
Q02750 (1)
P04637 (1)

ENSEMBL ID

ENSG00000170477 (83)
ENSG00000229353 (34)
ENSG00000147251 (25)
ENSG00000247315 (14)
ENSG00000204131 (11)
ENSG00000176092 (3)
ENSG00000214897 (3)

CHEBI ID

CHEBI:30769 (71)
CHEBI:15428 (67)
CHEBI:16919 (64)
CHEBI:18012 (62)
CHEBI:16737 (61)
CHEBI:15354 (61)
CHEBI:15891 (59)
CHEBI:16704 (57)
CHEBI:17368 (56)
CHEBI:32816 (55)
CHEBI:16449 (54)
CHEBI:17596 (54)
CHEBI:16708 (52)
CHEBI:16027 (52)
CHEBI:25017 (51)
CHEBI:16335 (51)
CHEBI:18132 (49)
CHEBI:78320 (49)
CHEBI:16750 (48)
CHEBI:17750 (48)
CHEBI:30915 (48)
CHEBI:17822 (47)
CHEBI:17568 (47)
CHEBI:27266 (46)
CHEBI:6650 (45)
CHEBI:28044 (45)
CHEBI:27897 (45)
CHEBI:114785 (1)
CHEBI:15996 (1)
CHEBI:17552 (1)

Metabolite Name

Creatine (68)
Hypoxanthine (57)
Creatinine (56)
Choline (54)
Adenosine (53)
Taurine (51)
Xanthine (47)
Betaine (46)
Glycine (44)
Adenine (43)
Uracil (42)
L-Phenylalanine (42)
Inosine (42)
L-Tryptophan (41)
Uridine (40)
Glycerophosphocholine (40)
L-Tyrosine (40)
Guanosine (39)
L-Proline (38)
Guanine (38)
ADP (37)
L-Valine (36)
L-Threonine (35)
Pyridoxine (35)
Citric acid (35)
Riboflavin (35)
Cytidine (35)
L-Isoleucine (35)
L-Arginine (34)
L-Histidine (34)

First Public Date

2014 (111)
2025 (92)
2024 (65)
2023 (60)
2019 (49)
2026 (48)
2021 (45)
2020 (41)
2022 (37)
2017 (29)
2015 (26)
2018 (24)
2016 (14)
2013 (8)

Modelling Approach

Ordinary differential equation model (2)

Study status

Completed (83)
Recruiting (50)
Not provided (24)
Not yet recruiting (13)
Active, not recruiting (10)
Terminated (5)
Ongoing (3)
Enrolling by invitation (3)
Suspended (1)
Withdrawn (1)

Lab affiliation

CRUK -CRUK Scotland nstitute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (2)
Personalized Genomic Medicine Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB) (2)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (1)
Brown University (1)
CRUK -CRUK Scotland Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (1)
Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada. (1)
Center for Molecular Imaging, Departments of Radiology and Surgery, The University of Michigan, BSRB A502, Ann Arbor, MI 48109, United States. (1)
Center for Scientific Research and Higher Education of Ensenada (CICESE) (1)
DKFZ, Germany (1)
Department of Innovative Technologies in Medicine & Dentistry, University of Chieti, Italy (1)
Department of Molecular Tropical Medicine and Genetics, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand (1)
Department of Proteomics and Signal Transduction. MaxPlanck Institute of Biochemistry (1)
Department of Translational Hematology and Oncology Research, Taussig Cancer Institute, Cleveland Clinic, Cleveland, OH, USA (1)
Département de biochimie Faculté de Médecine Université de Montréal (1)
Département d’Immunologie et Biologie Cellulaire, Faculté de Médecine et des Sciences de la Santé, Université de Sherbrooke, Sherbrooke, Québec, Canada, (1)
Experimental Neurosurgery, University Hospital,Goethe University, Frankfurt, Germany (1)
Faculty of Medicine, University of Helsinki and Helsinki University Hospital, Helsinki, Finland (1)
Full Professor, Director Of Academic Centre - Conway Institute School of Public Health, Physiotherapy and Sports Science (1)
Head of Analytical Biochemistry (1)
Head of Analytical Biochemistry, University of Groningen (1)
Head of Laboratory of Neuro-Oncology, Neurology, Clinical & Cancer Proteomics (1)
Immune Regulation and Cancer, Max Delbrück Center for Molecular Medicine in the Helmholtz Association, Berlin, Germany (1)
Indiana University School of Medicine (1)
Indiana University School of Medicine, Dept of Pediatrics; Herman B Wells Center for Pediatric Research (1)
Insitute for Molecular Medicine and Cell Research, University of Freiburg, Germany (1)
Institute for Molecular Medicine, Heinrich-Heine-University, Med. Faculty, Düsseldorf, Germany; Molecular Proteomics Laboratory, Centre for Biological and Medical Research (BMFZ), Heinrich-Heine-University, Düsseldorf, Germany. (1)
Institute of Biomedical Sciences, Department of Anatomy, University of São Paulo,São Paulo, Brazil, Av. Prof. Lineu Prestes, 2415, Butantã, São Paulo, SP, 05508-000. (1)
Institute of Cancer Sciences, University of Glasgow, Wolfson Wohl Cancer Research Centre, Garscube Estate, Switchback Road, Bearsden, Glasgow G61 1QH, UK (1)
Institute of Veterinary Pharmacology and Toxicology, Vetsuisse Faculty, University of Zurich, Winterthurerstr. 260, 8057 Zurich, Switzerland (1)
Laboratory for Applied Science and Technology in Health, Carlos Chagas Institute, Oswaldo Cruz Foundation (Fiocruz),Curitiba, Brazil (1)

Keyword

Colonoscopy (16)
Screening (6)
Colorectal neoplasia (5)
FIT (4)
Inflammatory Bowel Disease (3)
Dysplasia (3)
Artificial intelligence (3)
Neoplasms by Site (3)
Chromoendoscopy (3)
Intestinal Neoplasms (3)
Gastrointestinal Neoplasms (3)
Digestive System Neoplasms (3)
Mesalamine (2)
Advanced colorectal neoplasia (2)
Advanced neoplasia (2)
Narrow band imaging（NBI） (2)
Colorectal lesions (2)
Predicting histology (2)
Virtual Colonoscopy (2)
Colonography (2)
Treatment (2)
Fecal immunochemical test (2)
IBD (2)
Polypectomy (2)
Stool (2)
Inflammatory bowel disease (2)
Family history (2)
Colonic Polyps (2)
Curcumin (2)
Endoscopy (2)

IsPrivate

False (2)

Classification

viruses (1)

Study type

Transcription profiling by array (6552)
RNA-seq of coding RNA (970)
Comparative genomic hybridization by array (741)
Methylation profiling by array (386)
ChIP-seq (295)
Unknown experiment type (182)
RNA-seq of coding RNA from single cells (180)
Genotyping by array (165)
RNA-seq of non coding RNA (108)
DNA-seq (94)
MicroRNA profiling by array (93)
Methylation profiling by high throughput sequencing (78)
Other (75)
Transcription profiling by RT-PCR (64)
ChIP-chip by array (36)
RNA-seq of total RNA (36)
ChIP-chip by tiling array (35)
RNAi profiling by array (33)
Cell line - High-throughput sequencing (30)
Human - High-throughput sequencing (25)
ATAC-seq (21)
MicroRNA profiling by high throughput sequencing (20)
Spatial transcriptomics by high-throughput sequencing (19)
Animal - High-throughput sequencing (18)
Proteomic profiling by array (18)
Human - One-color microarray (16)
Transcription profiling by SAGE (13)
Animal - One-color microarray (13)
Cell line - One-color microarray (13)
High-throughput sequencing (11)

Release Date

2013 (1476)
2014 (1447)
2015 (1355)
2012 (1352)
2011 (1156)
2016 (1121)
2010 (1074)
2025 (799)
2021 (747)
2008 (704)
2022 (689)
2023 (685)
2020 (610)
2019 (578)
2009 (559)
2018 (510)
2024 (502)
2017 (429)
2007 (300)
2026 (264)
2005 (175)
2006 (139)
2004 (44)
2003 (27)
2002 (24)
2001 (16)
2000 (13)
1999 (6)
1997 (2)
1998 (1)

Location

United States (36)
Netherlands (25)
China (23)
Australia (14)
Italy (12)
Japan (11)
France (11)
Germany (10)
Hong Kong (8)
United Kingdom (8)
Canada (7)
Spain (5)
South Korea (4)
Israel (4)
Czechia (4)
Singapore (3)
Puerto Rico (3)
Portugal (3)
Sweden (3)
Poland (3)
Brazil (3)
Taiwan (2)
Ireland (1)
Asia (1)
Lithuania (1)
New Zealand (1)
Europe (1)
Mexico (1)
Denmark (1)
Turkey (1)

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Disruption of PPARg signaling results in mouse prostatic intraepithelial neoplasia (mPIN) involving active autophagy

Peroxisome proliferator-activated receptor-gamma (PPARg) regulates the interface between cellular lipid metabolism, redox status and organelle differentiation. Following conditional prostatic epithelial knockout of PPARg in mice we observed focal hyperplasia of the epithelium which developed to mous...

ORGANISM(S): Mus musculus

2010-05-18 | E-GEOD-13867 | biostudies-arrayexpress

Modeling Inducible Human Tissue Neoplasia Identifies an ECM Interaction Network Involved in Cancer Progression

To elucidate mechanisms of cancer progression, we generated inducible human neoplasia in 3-dimensionally intact epithelial tissue. Gene expression profiling of both epithelia and stroma at specific time points during tumor progression revealed sequential enrichment of genes mediating discrete biolog...

ORGANISM(S): Mus musculus

2009-06-02 | E-GEOD-15299 | biostudies-arrayexpress

Microsatellite instability analysis of sebaceous neoplasia

PRJEB79222 | ENA

Transcription profiling of human vulvar epithelial neoplasia vs normal controls

In order to understand the molecular mechanism behind Vulvar Intraepithelial Neoplasia (VIN), we have analyzed the gene expression profile of VIN lesions in comparison to controls. Experiment Overall Design: Nine VIN and 10 control samples were collected. RNA of each sample was isolated and analyzed...

ORGANISM(S): Homo sapiens

2007-11-01 | E-GEOD-5563 | biostudies-arrayexpress

Mismatch repair gene sequencing of sebaceous neoplasia

PRJEB79223 | ENA

Label-free quantitative proteomics of gastric high-grade intraepithelial neoplasia

Purpose: Early detection and diagnosis are the keys to improving the survival rate and reducing the fatality rate linked to gastric cancer. The precancerous lesion of gastric cancer is referred to as Gastric high-grade intraepithelial neoplasia (HGIN). Both sensitivity and specificity of current bio...

ORGANISM(S): Homo sapiens (Human)

2025-06-02 | PXD036991 | Pride

GNPS Comparable plasma lipid changes in patients with high-grade cervical intraepithelial neoplasia and patients with cervical cancer

Comparable plasma lipid changes in patients with high-grade cervical intraepithelial neoplasia and patients with cervical cancer

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2020-10-22 | MSV000086351 | GNPS

Proteome profiling of normal epithelium, tubular adenoma, tubulovillous adenoma, high-grade neoplasia, cancer tissues in colorectum

Most of the carcinogenesis of colorectal cancer (CRC) follows the normal-adenoma-carcinoma (N-A-C) sequence. We aimed to identify the key proteins in the N-A-C sequence and describe the proteomic pattern of tubular adenoma, tubulovillous adenoma and high-grade neoplasia. This study used high-resolut...

ORGANISM(S): Homo Sapiens

2021-01-30 | PXD023899 |

Transcription profiling of human thyroid gland cells to find molecular signatures of thyroid follicular neoplasia

Sixty-nine (69) tumor samples were collected from patients who underwent thyroidectomy.

The tumors included 22 benign follicular adenomas, 18 follicular carcinomas, 12 samples of microfollicular adenomas, 4 anaplastic carcinomas, 2 papillary carcinomas, and 9 nodular goiters. 23 samples were ...

ORGANISM(S): Homo sapiens

2010-08-05 | E-MEXP-2442 | biostudies-arrayexpress

Transcription profiling by array of human prostate from patients with a previous diagnosis of Prostatic Intraepithelial Neoplasia and following consumption of high glucosinolate broccoli or peas to investigate interactions with the GSTM1 genotype

Twenty-two male volunteers aged 30-70 years with a previous diagnosis of Prostatic Intraepithelial Neoplasia (PIN) were recruited by a consultant urologist at Norfolk and Norwich University Hospital NHS Trust. Ethical approval for the trial was obtained from the Norfolk Research Ethics Committee (re...

ORGANISM(S): Homo sapiens

2008-07-16 | E-MEXP-1243 | biostudies-arrayexpress

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