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Unknown
(273)
Proteomics
(9)
Transcriptomics
(6)
Genomics
(1)
Metabolomics
(1)
Organisms
Homo sapiens
(7)
Mus musculus
(3)
Oryza sativa Japonica Group
(1)
Pseudomonas aeruginosa PAO1
(1)
Thermus thermophilus HB27
(1)
Repository
biostudies-arrayexpress
(7)
pride
(6)
MassIVE
(3)
MetaboLights
(1)
Tissue
Cell culture
(3)
Bile
(1)
Epithelial cell
(1)
Technology Type
Mass Spectrometry
(6)
Shotgun proteomics
(4)
Mass spectrometry assay
(1)
Affinity purification coupled with mass spectrometry proteomics
(1)
Gel-based experiment
(1)
SWATH MS
(1)
Instrument Platform
Orbitrap Exploris 480
(2)
Orbitrap Fusion Lumos
(2)
Illumina HiSeq 1500
(1)
NextSeq 550
(1)
Illumina NovaSeq 6000
(1)
LTQ Orbitrap Elite
(1)
Q Exactive HF-X
(1)
Liquid Chromatography MS -
(1)
Publication Date
2024
(3)
2023
(3)
2015
(2)
2018
(1)
2014
(1)
2007
(1)
2026
(1)
2022
(1)
2020
(1)
2019
(1)
2017
(1)
CHEBI ID
CHEBI:15741
(1)
CHEBI:15801
(1)
CHEBI:15891
(1)
CHEBI:16264
(1)
CHEBI:16856
(1)
CHEBI:16865
(1)
CHEBI:16958
(1)
CHEBI:17053
(1)
CHEBI:17202
(1)
CHEBI:17295
(1)
CHEBI:176760
(1)
CHEBI:17895
(1)
CHEBI:18012
(1)
CHEBI:18050
(1)
CHEBI:18261
(1)
CHEBI:18307
(1)
CHEBI:30865
(1)
CHEBI:58115
(1)
CHEBI:6650
(1)
CHEBI:71169
(1)
CHEBI:84520
(1)
Metabolite Name
(R)-2-Hydroxyglutarate
(1)
1-Palmitoyl-2-hydroxy-sn-glycero-3-PE
(1)
1-palmitoyl-2-stearoyl-sn-glycero-3-phosphoserine
(1)
3-Ureidopropionic acid
(1)
Beta-Alanine
(1)
DL-Malic acid
(1)
Dihydrooroticacid
(1)
Fumaricacid
(1)
Gamma-Aminobutyric Acid
(1)
Glutathione
(1)
Guanosine5'-monophosphate
(1)
Inosinic acid
(1)
L-Aspartic acid
(1)
L-Glutamine
(1)
L-Phenylalanine
(1)
L-Tyrosine
(1)
Succinic acid
(1)
Succinyladenosine
(1)
Taurine
(1)
UDP-N-acetylglucosamine
(1)
Uridine 5'-diphosphogalactose
(1)
Study type
Transcription profiling by array
(3)
RNA-seq of coding RNA
(2)
ChIP-seq
(1)
RNA-seq of coding RNA from single cells
(1)
Release Date
2025
(38)
2021
(30)
2024
(28)
2022
(23)
2020
(23)
2023
(21)
2019
(18)
2018
(15)
2015
(14)
2014
(12)
2017
(12)
2016
(11)
2013
(10)
2011
(7)
2008
(4)
2012
(3)
2010
(3)
2007
(2)
2026
(1)
2009
(1)
2006
(1)
2005
(1)
2004
(1)
1999
(1)
Lab affiliation
Alexander Schmidt, Biozentrum, University of Basel Spitalstrasse 41, CH-4056 Basel, Switzerland Tel. +41 61 207 0927, https://www.biozentrum.unibas.ch
(1)
Alexander Schmidt, Biozentrum, University of Basel, Spitalstrasse 41, CH-4056 Basel, Switzerland, Tel. +41 61 207 0927, https://www.biozentrum.unibas.ch
(1)
Bavarian Center for Biomolecuar Mass Spectrometry (BayBioMS, Technical University of Munich (TUM), Freising, Germany
(1)
Julian Langer: MPI for Biophysics and Brain Research Kate Heesom (k.heesom@bristol.ac.uk): University of Bristol Proteomics Facility
(1)
Medizinisches Proteom-Center (MPC) Ruhr-Universität Bochum Clinical Proteomics - Infection Research Universitaetsstrasse 150, D-44801 Bochum
(1)
University Hospital of Cologne Department II of Internal Medicine Nephrolab Cologne CECAD Research Center
(1)
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ddPCR allows 16S rRNA gene amplicon sequencing of very small DNA amounts from low-biomass samples.
Not available
S-EPMC8684222
|
biostudies-literature
Cite
Non-canonical transcriptional start sites in E. coli O157:H7 EDL933 are regulated and appear in surprisingly high numbers.
Not available
S-EPMC10469882
|
biostudies-literature
Cite
Assessing tick attachments to humans with citizen science data: spatio-temporal mapping in Switzerland from 2015 to 2021 using spatialMaxent.
Not available
S-EPMC11759452
|
biostudies-literature
Cite
The novel EHEC gene asa overlaps the TEGT transporter gene in antisense and is regulated by NaCl and growth phase.
Not available
S-EPMC6294744
|
biostudies-literature
Cite
Comparison of rRNA depletion methods for efficient bacterial mRNA sequencing.
Not available
S-EPMC8986838
|
biostudies-literature
Cite
A novel short L-arginine responsive protein-coding gene (laoB) antiparallel overlapping to a CadC-like transcriptional regulator in Escherichia coli O157:H7 Sakai originated by overprinting.
Not available
S-EPMC5810103
|
biostudies-literature
Cite
Population Genetics of the Deep-sea Acorn Barnacle
Bathylasma hirsutum
(Hoek, 1883) and the First Report of its Affiliation with a Hydrothermal Vent Field.
Not available
S-EPMC11659818
|
biostudies-literature
Cite
Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing.
Not available
S-EPMC8544895
|
biostudies-literature
Cite
Comparison of strand-specific transcriptomes of enterohemorrhagic Escherichia coli O157:H7 EDL933 (EHEC) under eleven different environmental conditions including radish sprouts and cattle feces.
Not available
S-EPMC4048457
|
biostudies-literature
Cite
Unraveling the Role of Ensheathing Cells and Perineural Fibroblasts in Olfactory Neurogenesis.
Not available
S-EPMC12541900
|
biostudies-literature
Cite
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