Neural health - OmicsDI

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Unknown (25231)
Transcriptomics (3356)
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Proteomics (220)
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Genomic (16)
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Organisms

Homo sapiens (1514)
Mus musculus (1047)
Rattus norvegicus (137)
Arabidopsis thaliana (123)
Saccharomyces cerevisiae (103)
Drosophila melanogaster (87)
Schizosaccharomyces pombe (56)
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Streptomyces venezuelae (7)
Mus (1)
Mammalia (1)

Organisms

Mus musculus (137)
Homo sapiens (116)
Rattus norvegicus (20)
Danio rerio (6)
Drosophila melanogaster (3)
Gallus gallus (2)
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Anisakis simplex (1)
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Xenopus laevis (1)
human feces metagenome (1)
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gut metagenome (1)
Sus scrofa (1)
Ovis aries (1)

Repository

biostudies-arrayexpress (3607)
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geo (101)
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pride (76)
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Tissue

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Disease

Normal (36)
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Benign nevi (1)
High grade glioblastoma (1)
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Adenoma (1)
Perineural invasion (1)
Large cell neuroendocrine carcinoma (1)
ER positive breast cancer (1)
T. circumcincta infection (1)
Breast Carcinoma (1)
Autoimmune disorder (1)
Not applicable (1)

Technology Type

Mass Spectrometry (76)
Bottom-up proteomics (31)
Mass spectrometry (25)
Shotgun proteomics (25)
Data-independent acquisition (16)
SWATH MS (13)
Mass spectrometry assay (9)
Data-dependent acquisition (9)
NMR spectroscopy (4)
DiaPASEF (4)
Affinity purification coupled with mass spectrometry proteomics (3)
All-ion fragmentation (2)
Gel-based experiment (2)
Top-down proteomics (2)
Illumina MiSeq, ILLUMINA (1)
Illumina OmniQuad 2.5 - CNVpartition (1)

Instrument Platform

Illumina NovaSeq 6000 (71)
Illumina HiSeq 2000 (59)
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Scanning hardware (11)
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GenePix 4000A [Axon Instruments] (9)
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ScanArray 5000 [PerkinElmer] (7)
Illumina NovaSeq X (6)
Spectronic Helios Alpha UV-Vis spectrophotometer (5)
Generation III Array Scanner [Amersham] (5)
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Vortex (5)
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NextSeq 550 (5)
ArrayWoRx Biochip Reader [Applied Precision] (4)
GenePix Professional 4200A [Axon Instruments] (4)
NanoDrop (4)
418 [Affymetrix] (4)
G2565BA DNA microarray scanner [Agilent] (4)
N/A (4)
NextSeq 2000 (4)
DNBSEQ-G400 (4)
HiSeq X Ten (4)

Publication Date

2013 (433)
2010 (425)
2012 (389)
2014 (375)
2011 (367)
2015 (325)
2008 (232)
2009 (192)
2016 (183)
2020 (142)
2007 (139)
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2006 (64)
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2019 (55)
2004 (44)
2018 (41)
2017 (41)
2003 (2)
2002 (2)

UNIPROT ID/AC

14310_ARATH (3)
14311_ARATH (3)
14332_ARATH (3)
14333_ARATH (3)
14334_ARATH (3)
14335_ARATH (3)
14336_ARATH (3)
14337_ARATH (3)
14338_ARATH (3)
14339_ARATH (3)
1A112_ARATH (3)
2A5A_ARATH (3)
2A5B_ARATH (3)
2A5G_ARATH (3)
2AAA_ARATH (3)
2AAB_ARATH (3)
2AAG_ARATH (3)
2AB2A_ARATH (3)
2AB2C_ARATH (3)
2AB2D_ARATH (3)
2ABA_ARATH (3)
2ABB_ARATH (3)
3702.AT3G04400.1 (3)
3702.AT3G53750.1 (3)
3702.AT3G56800.1 (3)
3702.AT3G59540.1 (3)
3702.AT3G62840.1 (3)
P19174 (1)
P42212 (1)
P50148 (1)

CHEBI ID

CHEBI:28300 (10)
CHEBI:30769 (10)
CHEBI:16811 (9)
CHEBI:16704 (9)
CHEBI:26271 (8)
CHEBI:18186 (8)
CHEBI:24898 (8)
CHEBI:25017 (8)
CHEBI:27266 (8)
CHEBI:15891 (8)
CHEBI:25094 (8)
CHEBI:18237 (8)
CHEBI:15354 (8)
CHEBI:17368 (8)
CHEBI:17234 (7)
CHEBI:26986 (7)
CHEBI:16761 (5)
CHEBI:17287 (4)
CHEBI:15846 (4)
CHEBI:16027 (4)
CHEBI:26689 (1)
CHEBI:5656 (1)
CHEBI:29101 (1)
CHEBI:17138 (1)
CHEBI:15422 (1)
CHEBI:16908 (1)
CHEBI:16004 (1)
CHEBI:18021 (1)
CHEBI:15361 (1)
CHEBI:29108 (1)

Metabolite Name

Adenine (7)
Methionine (6)
Uridine (6)
Creatinine (6)
Creatine (6)
Inosine (6)
Glutamate (5)
Tyrosine (5)
Valine (5)
Isoleucine (5)
Hippuric acid (5)
Hypoxanthine (5)
UDP-glucose (4)
Leucine (4)
Taurine (4)
Proline (4)
Lysine (4)
Aspartate (4)
Arginine (4)
Histidine (4)
Phenylalanine (4)
Threonine (4)
Glucose (4)
Choline (4)
Glutamine (4)
Citrate (4)
Alanine (4)
Uracil (4)
Betaine (4)
L-Histidine (4)

First Public Date

2024 (60)
2025 (52)
2026 (40)
2023 (38)
2014 (38)
2022 (22)
2020 (21)
2019 (18)
2021 (17)
2015 (15)
2018 (11)
2017 (9)
2016 (9)
2013 (3)

Modelling Approach

Ordinary differential equation model (5)
Other (1)

Study status

Recruiting (1)

Lab affiliation

Novo Nordisk Foundation, Center for Protein Research Faculty of Health and Medical Sciences University of Copenhagen Blegdamsvej 3B, DK-2200 Copenhagen N Denmark (2)
- Life and Health Sciences Research Institute (ICVS), School of Medicine, University of Minho, Portugal - ICVS/3B’s Associate Lab, PT Government Associated Lab, Portugal (1)
1-Physiological Genomics, Biomedical Center (BMC), Ludwig-Maximilians Universitaet Muenchen, 82152 Planegg/Munich, Germany. 2- Institute for Stem Cell Research, Helmholtz Zentrum Muenchen, German Research Center for Environmental Health, 85764 Neuherberg, Germany. (1)
1. CERVO Brain Research Centre, Quebec Mental Health Institute; Québec, QC, G1E 1T2, Canada. 2. Department of Psychiatry & Neuroscience, Université Laval; Québec, QC, G1V 0A6, Canada. (1)
1Center for Medical Genetics, Ghent University Hospital, Ghent, 9000, Belgium 2Department of Biomolecular Medicine, Faculty of Medicine and Health Sciences, Ghent (1)
2IDAEA-CSIC, Jordi Girona 18, 08034, Barcelona, Spain (1)
Benaki Phytopathological Institute, 8 Stefanou Delta Str., 14561 Athens, Greece. (1)
Buck Institute for Research on Aging (1)
Center of Neurodevelopmental Disorders (KIND), Centre for Psychiatry Research, Department of Women’s and Children’s Health, Karolinska Institute, Region Stockholm, Stockholm, Sweden Astrid Lindgren Children’s Hospital, Karolinska University Hospital, Region Stockholm, Stockholm, Sweden (1)
Centre for Brain Health, Dept. of Medicine, University of British Columbia, Vancouver, British Columbia V6T 1B5, Canada (1)
Centre for Children's Health Research (CCHR) Queensland University of Technology 62 Graham Street South Brisbane, QLD 4101 AUSTRALIA (1)
Centre for Inflammatory Diseases, Department of Medicine, School of Clinical Sciences at Monash Health, Monash University, Clayton, VIC, 3168, Australia. (1)
Chemical Proteomics, Division of Chemistry I, Department of Medical Biochemistry and Biophysiscs (MBB), Karolinska Institutet, Biomedicum, Solna, Sweden (1)
Circadian Clock Project, TOkyo Metropolitan Institute of Health Science (1)
College of Medicine, Department of Medical Sciences, University of Sharjah, Sharjah, UAE Center of Excellence of Precision Medicine, Sharjah Institute for Medical Research, Sharjah, UAE Research Institute of Medical and Research Sciences, Sharjah, UAE (1)
Dairy Science & Technology, Food Quality & Design group, Wageningen University & Research, Wageningen, The Netherlands (1)
Department of Computer Science and Engineering, University of North Texas (1)
Department of Molecular Biology, Cristea Lab, Princeton University, Princeton, NJ, US (lab head) (1)
Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Germany (1)
Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany. NNF Center for Protein Research, Faculty of Health Science, University of Copenhagen, Copenhagen, Denmark. (1)
Department of Proteomics and Signal Transduction; Max-Planck Institute of Biochemistry; Martinsried, Bavaria, 82152; Germany (1)
Department of Psychiatry, Seaver Autism Center for Research and Treatment, Mindich Child Health and Development Institute, Friedman Brain Institute, Alper Center for Neural Development and Regeneration, Icahn School of Medicine at Mount Sinai, USA (1)
Department of Science, University of Chieti, Italy (1)
Director Sanford Stem Cell Education and Integrated Space Stem Cell Orbital Research (ISSCOR) Center Director Gene Therapy Initiative (1)
Director, UAB CCC Proteomics Facility; Professor, UAB Anesthesiology (1)
Director, UAB CCC Proteomics Facility; Professor, UAB Anetsthesiology (1)
Division of Radiation Health, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA; pgsimmons@uams.edu (P.S.) 2 Department of Pharmaceutical Sciences, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA 3 Department of Neurobiology and Developmental Sciences, University of Arkansas for Medical Sci-ences, 4301 W Markham Little Rock, AR 72205, USA (1)
Duke-NUS Medical School, Singapore. Department of Neuroscience, Department of Neurology, School of Medicine and Public Health, Waisman Center, University of Wisconsin, USA. (1)
ExoBrain - Laboratory of Brain Exosomes & Pathology Institute of Biosciences & Applications NCSR "Demokritos" T. Patriarchou Grigoriou & Neapoleos 15341 Athens, Greece (1)
Experimental and Clinical Research Center, a cooperation between Max Delbrück Center for Molecular Medicine in the Helmholtz Association and Charité Universitätsmedizin Berlin, Berlin, Germany. Humboldt-Universität zu Berlin, Faculty of Life Sciences Berlin, Germany Berlin Institute of Health (BIH), Center for Regenerative Therapies, Berlin, Germany (1)

Keyword

NIH Toolbox (1)
Toolbox (1)
Autonomic Nervous System Dysregulation (1)
PHOX2B (1)

IsPrivate

False (6)

Submitter Keywords

FAIR-AIML (1)
Machine Learning Model (1)

Modification

4x(2)H labeled dimethylated residue (1)

Study type

Transcription profiling by array (2264)
RNA-seq of coding RNA (341)
ChIP-seq (240)
Methylation profiling by array (110)
Comparative genomic hybridization by array (105)
ChIP-chip by tiling array (67)
ChIP-chip by array (58)
Other (47)
Methylation profiling by high throughput sequencing (44)
RNA-seq of coding RNA from single cells (43)
Unknown experiment type (40)
RNA-seq of non coding RNA (40)
DNA-seq (28)
Genotyping by array (18)
Transcription profiling by RT-PCR (17)
Cell line - High-throughput sequencing (12)
MicroRNA profiling by array (12)
RNA-seq of total RNA (12)
Transcription profiling by tiling array (11)
High-throughput sequencing (9)
Proteomic profiling by array (8)
Animal - One-color microarray (7)
Single nucleus RNA sequencing (6)
Transcription profiling by SAGE (5)
Human - One-color microarray (4)
Animal - High-throughput sequencing (4)
ATAC-seq (4)
Human - High-throughput sequencing (3)
RNAi profiling by array (3)
RIP-seq (3)

Release Date

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2006 (100)
2005 (91)
2004 (54)
2003 (11)
2002 (10)
2000 (6)
2001 (4)
1999 (3)
1997 (3)
1998 (2)

Location

United States (1)

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Time-Restricted Feeding Orchestrates Astrocytic Metabolic Reprogramming via the Wnt Pathway to Alleviate Sevoflurane-Induced Neural Injury

Perioperative neurocognitive disorders (PND) pose a significant challenge for aging surgical patients, with sevoflurane anesthesia being an identified risk factor. Time-restricted feeding (TRF), a dietary regimen, shows promise in mitigating age-related cognitive decline, but its efficacy and mec...

2026-02-17 | MTBLS13891 | MetaboLights

Human iPSC-derived mononuclear phagocytes restore cognition, neural health, and a subpopulation of hippocampal mossy cells in aging mice

Young blood or plasma and young bone marrow improves cognitive function in aged animals, though the cell type responsible for these regenerative effects remains unknown. This study evaluated the potential of induced pluripotent stem cell-derived mononuclear phagocytes (iMPs) as a therapeutic for ag...

ORGANISM(S): Mus musculus (Mouse)

2025-11-10 | PXD052723 | Pride

Role of DNMT3B in the regulation of early neural and neural crest specifiers

The de novo DNA methyltransferase DNMT3B functions in establishing DNA methylation patterns during development. We performed RNAi knockdown of DNMT3B in human embryonic stem cells (ESCs) in order to investigate the mechanistic contribution of DNMT3B on DNA methylation and early neuronal differentiat...

ORGANISM(S): Homo sapiens

2012-03-27 | E-GEOD-32268 | biostudies-arrayexpress

Isolation and transcriptional profiling of embryonic human neural crest cells

To identify new candidate genes for neurocristopathies, a Long-SAGE library has been made from human neural crest cells (hNCC) derived from a normal embryo at Carnegie stage 13. Data analysis indicates the expression of a number of genes in multiple GO functional classes that were anticipated based...

ORGANISM(S): Homo sapiens

2008-08-07 | E-GEOD-8368 | biostudies-arrayexpress

RNA-seq analysis of gene expression patterns responding to TSA treatment during hESC neural differentiation

We report the differential roles of an HDAC inhibitor-TSA during hESC nerual commitment. In the initiation of hESC differentiation, TSA could inhibit the downregulation of pluripotency genes to maintain pluripotency, whereas in the neural commitment stage, TSA could promote neural gene expression to...

ORGANISM(S): Homo sapiens

2015-03-11 | E-GEOD-66777 | biostudies-arrayexpress

ES, EC, NS, TS, Placenta and Neural induction (N2B27) comaprison

Comparison among ES, EC, TS, NS, differentiated neural cells derived from NS and placenta in addition to ES-N2B27 neural induction. Comparison among ES, EC, TS, NS, differentiated neural cells derived from NS and placenta in addition to ES-N2B27 neural induction.

ORGANISM(S): Mus musculus

2010-06-11 | E-GEOD-4077 | biostudies-arrayexpress

Transcription profiling of mouse murine dorsal neural tube bisected along the midline with one half from each embryo used for control and the other half treated with 10-6M RA dissolved in ethanol for 6, 12, 24 or 48 h

This series represents murine dorsal neural tube bisected along the midline with one half from each embryo used for control and the other half treated with 10-6M RA dissolved in ethanol for 6, 12, 24 or 48 h. For 6 h exposures, the explants were cultured overnight on fibronectin coated 35mm dishes (...

ORGANISM(S): Mus musculus

2007-10-11 | E-GEOD-1588 | biostudies-arrayexpress

Defining a developmental path to neural fate by global expression profiling of mouse ESCs and adult NS cells

Defining a developmental path to neural fate by global expression profiling of mouse embryonic stem cells and adult neural stem/progenitor cells. This SuperSeries is composed of the following subset Series: GSE4075: Neural induction (Embrioid bodies-Retinoic acid) GSE4076: Neural induction (N2B27 m...

ORGANISM(S): Mus musculus

2010-06-11 | E-GEOD-4082 | biostudies-arrayexpress

Neural induction (Embrioid bodies-Retinoic acid)

Neural induction of ES by Retinoic acid Neural induction of ES by Retinoic acid

ORGANISM(S): Mus musculus

2010-06-11 | E-GEOD-4075 | biostudies-arrayexpress

Development of a Neural Teratogenicity Test Based on Human Embryonic Stem Cells- Response to Retinoic Acid Exposure

The aim of this study was the development of an alternative testing method based on human embryonic stem cells for prenatal developmental toxicity with particular emphasis on early neural development. To this purpose, we designed an in vitro protocol based on the generation of neural rosettes, repre...

ORGANISM(S): Homo sapiens

2012-03-13 | E-MEXP-3577 | biostudies-arrayexpress

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