Neuropathology - OmicsDI

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Unknown (9285)
Genomics (524)
Transcriptomics (221)
Proteomics (88)
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Models (1)

Organisms

Mus musculus (149)
Homo sapiens (123)
Bartonella quintana JK 31 (67)
Bombyx mori (67)
Onchocerca volvulus (67)
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Schizosaccharomyces pombe (67)
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Rattus norvegicus (6)
Ovis aries (2)
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Macaca fascicularis (1)
Macaca mulatta (1)
Caenorhabditis elegans (1)
Drosophila melanogaster (1)
Mus (1)
Danio rerio (1)

Organisms

Mus musculus (230)
Homo sapiens (190)
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Macaca fascicularis (1)
Caenorhabditis elegans (1)
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human gut metagenome (1)
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Repository

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geo (212)
pride (67)
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Tissue

Brain (41)
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Neural progenitor cell (1)
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Microglia (1)
Cell suspension culture (1)
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Disease

Alzheimer's disease (11)
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Alzheimer's disease 18 (1)
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Leukoencephalopathy with vanishing white matter (1)
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Stroke (1)
FTDALS1 (1)
Multiple sclerosis (1)
Lewy body dementia (1)
Frontotemporal dementia (1)
Skin cancer (1)
Huntington Disease (1)
Brain cancer (1)
Amyotrophic lateral sclerosis (1)
Disease free (1)

Technology Type

Mass Spectrometry (67)
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Bottom-up proteomics (13)
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SWATH MS (4)
Data-independent acquisition (4)
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Mass spectrometry (3)
All-ion fragmentation (3)
HDMSE (2)
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Affinity purification coupled with mass spectrometry proteomics (2)
ILLUMINA, Illumina HiSeq 2000 (1)
DiaPASEF (1)
SRM/MRM (1)

Instrument Platform

Orbitrap Exploris 480 (3)
Orbitrap Fusion (3)
QTRAP 6500+ (2)
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Q Exactive Plus (2)
Liquid Chromatography MS - positive - reverse phase (2)
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Thermal cycler, Eppendorf ThermoMixer C (1)
Promega Maxwell RSC instrument (1)
Leica microtome, 1 mm biopsy punch (1)
Illumina® (NEB, USA) (1)
Illumina iScan System (1)
G2565AA DNA microarray scanner [Agilent] (1)
Illumina NovaSeq X (1)
Illumina NovaSeq 6000 (1)
NextSeq 500 (1)
MALDI Synapt G2-S HDMS (1)
Orbitrap Ascend (1)
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Exactive Plus (1)
TimsTOF (1)
Q Exactive (1)
Q Exactive HF (1)
Flow injection analysis MS - negative (1)
Flow injection analysis MS - positive (1)
Liquid Chromatography MS - negative (1)

Publication Date

2025 (58)
2024 (45)
2022 (34)
2023 (30)
2021 (30)
2026 (26)
2020 (19)
2014 (17)
2016 (16)
2018 (15)
2019 (13)
2017 (10)
2015 (9)
2012 (8)
2010 (7)
2011 (5)
2009 (4)
2008 (4)
2007 (4)
2013 (3)
2005 (1)

UNIPROT ID/AC

TM253_HUMAN (2)
RSAD2_HUMAN (2)
LRC55_HUMAN (2)
FIGLA_HUMAN (2)
CD320_HUMAN (2)
BEX4_HUMAN (2)
MCH_HUMAN (2)
B3GN9_HUMAN (2)
OCEL1_HUMAN (2)
VWC2L_HUMAN (2)
YPEL4_HUMAN (2)
PNOC_HUMAN (2)
GLDN_HUMAN (2)
VOPP1_HUMAN (2)
MAML3_HUMAN (2)
PAQR8_HUMAN (2)
CAH10_HUMAN (2)
CCD78_HUMAN (2)
MTG8_HUMAN (2)
TM59L_HUMAN (2)
MPP9_HUMAN (2)
BRF2_HUMAN (2)
CNIH1_HUMAN (2)
MSMB_HUMAN (2)
CAC1A_HUMAN (2)
NCKX3_HUMAN (2)
PTN5_HUMAN (2)
CCG2_HUMAN (2)
ABCA7_HUMAN (2)
P08473 (1)

CHEBI ID

CHEBI:27897 (2)
CHEBI:15428 (2)
CHEBI:16449 (2)
CHEBI:17822 (2)
CHEBI:22660 (2)
CHEBI:22653 (2)
CHEBI:26986 (2)
CHEBI:28300 (2)
CHEBI:27266 (2)
CHEBI:16811 (2)
CHEBI:26271 (2)
CHEBI:18237 (2)
CHEBI:24898 (2)
CHEBI:25017 (2)
CHEBI:25094 (2)
CHEBI:29016 (2)
CHEBI:27570 (2)
CHEBI:28044 (2)
CHEBI:18186 (2)
CHEBI:64645 (1)
CHEBI:86490 (1)
CHEBI:83362 (1)
CHEBI:83361 (1)
CHEBI:83172 (1)
CHEBI:85595 (1)
CHEBI:85601 (1)
CHEBI:85600 (1)
CHEBI:85599 (1)
CHEBI:85626 (1)
CHEBI:85597 (1)

Metabolite Name

Total DMA (1)
T4-OH-Pro (1)
PEA (1)
Nitro-Tyr (1)
Met-SO (1)
C4-OH-Pro (1)
Alpha-AAA (1)
Ac-Orn (1)
Orn (1)
Cit (1)
Fructose-1,6-Bisphosphate (1)
Sedoheptulose-7-Phosphate (1)
AlphaKetoglutarate (1)
Glucose-1-Phosphate (1)
DOPA (1)
Adenosine triphosphate (ATP) (1)
Val (1)
Tyr (1)
Trp (1)
Thr (1)
Ser (1)
Pro (1)
Phe (1)
Met (1)
Lys (1)
Leu (1)
Ile (1)
His (1)
Gly (1)
Glu (1)

First Public Date

2025 (78)
2024 (60)
2014 (54)
2023 (47)
2022 (44)
2020 (42)
2021 (41)
2026 (32)
2018 (27)
2019 (22)
2016 (16)
2017 (14)
2015 (14)
2013 (9)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China (3)
Department of Immunobiology, College of Life Science and Technology, Jinan University, Guangzhou, China. (2)
Department of Cell Biology, Center of Research and Advanced Studies of the National Polytechnic Institute (CINVESTAV-IPN), Av. Instituto Politécnico Nacional 2508, CP 07360 Ciudad de México (CDMX), México. Tel.: +52 55 5747 3354 (2)
Department of Neurology, Yale School of Medicine, Yale University, new haven CT, USA (2)
Department of Hematology and Stem Cell Transplantation, University Duisburg-Essen, University Hospital Essen, Essen, Germany; West German Cancer Center Network, Partner Site Essen; Institute for Pathology and Neuropathology, University Hospital and Medical Faculty Cologne, Kerpenerstr 62 50937 Cologne, Germany (1)
Department of Neuropathology, Charité – Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, Berlin Institute of Health, Berlin, Germany (1)
Center for Diagbostik, Institute of Neuropathology, University Medical Center Hamburg Eppendorf, Germany (1)
Laboratory for Neuropathology, Department of Imaging and Pathology, KU Leuven (University of Leuven), Leuven, Belgium;Leuven Brain Institute (LBI), KU Leuven (University of Leuven), Leuven, Belgium;Department of Imaging & Pathology, UZ Leuven (University Hospital Leuven), Leuven, Belgium. (1)
Emory University School of Medicine Biochemistry Department (1)
University of South Carolina School of Medicine (1)
DIVAS (1)
Guangdong Medical University (1)
Department of Molecular Medicine and Medical Biotechnology - University of Naples "Federico II" (1)
Departments of Biochemistry and Neurology Emory University School of Medicine (1)
Neuropathology and Neurodegenration Laboratoty, The Florey Institute (1)
Neuropathology and Neurodegeneration Laboratory (1)
Appel Alzheimer's Disease Research Institute Feil Family Brain and Mind Research Institute Weill Cornell Medicine New York, NY 10021 (1)
Department of immunology, Peking Union Medical College, Beijing, China (1)
Laboratory of Pediatrics, UMCG, The Netherlands (1)
Centre de Recherche du CHU Ste-Justine (1)
Department of Pharmaceutical Sciences, University at Buffalo, State University of New York (1)
School of Biomedical Science, The Chinese University of Hong Kong (1)
University of Campinas - São Paulo - Brazil (1)
Department of Neuropathology, Medical Research institute and Center for Brain Integration Research, Tokyo Medical and Dental University, Japan (1)
Biomedical Research Institute of Lleida Dr. Pifarré Foundation (IRBLLEIDA) - +Pec Proteomics Research Group (+PPRG) - Neuroscience Area – University Hospital Arnau de Vilanova (HUAV), 80 Av. Rovira Roure, 25198, Lleida, Spain Department of Medical Basic Sciences, University of Lleida (UdL), +Pec Proteomics Research Group (+PPRG), 25198, Lleida, Spain (1)
The de Botton Institute for Protein Profiling, Nancy and Stephen Grand Israel National Center for Personalized Medicien, Weizmann Insitute of Science (1)
Department of Microbiology, Immunology, and Molecular Genetics, University of California, Los Angeles, Los Angeles, CA, USA Institute for Quantitative and Computational Biosciences, University of California, Los Angeles, Los Angeles, CA, USA (1)
Department of Molecular and Cellular Neurobiology, Center for Neurogenomics and Cognitive Research, Amsterdam Neuroscience, VU University Amsterdam, The Netherlands (1)
Institute for Neuropathology, University Medical Center Hamburg-Eppendorf, Martinistraße 52, 20246, Hamburg, Germany (1)
Chiara Guerrera, IRHC, HDR Head of the Necker Proteomics Faculty of Medecine, University Paris Cité SFR Necker INSERM US24 160 rue de Vaugirard | 75015 Paris Tél. 01 40 61 54 6 (1)

IsPrivate

False (1)

Classification

viruses (1)

Study type

Transcription profiling by array (39)
RNA-seq of coding RNA (8)
Methylation profiling by array (3)
Human - High-throughput sequencing (1)
ChIP-seq (1)
RNA-seq of total RNA (1)

Release Date

2022 (992)
2021 (950)
2023 (934)
2025 (853)
2020 (796)
2024 (790)
2019 (590)
2018 (583)
2016 (495)
2017 (467)
2015 (388)
2014 (340)
2013 (213)
2012 (204)
2011 (152)
2010 (131)
2026 (112)
2009 (111)
2008 (65)
2007 (42)
2006 (34)
2005 (25)
2004 (18)
2003 (12)
2002 (11)
1999 (10)
2001 (9)
2000 (6)
1998 (2)
1997 (1)

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Neuropathology and epilepsy surgery - 2024 update.

Not available

S-EPMC10964794 | biostudies-literature

How and why I fell into neuropathology.

Not available

S-EPMC10683528 | biostudies-literature

Cortical neuropathology RNA expression time-course after diffuse traumatic brain injury

PRJNA673863 | ENA

Transcription profiling of hippocampus of CV mice (C57Bl x VM/Dk) inoculated with ME7 scrapie to determine the molecular events that accompany the scrapie-associated hippocampal neuropathology

A study of differential gene expression in the hippocampus of CV mice (C57Bl x VM/Dk) inoculated with ME7 scrapie to determine the molecular events that accompany the scrapie-associated hippocampal neuropathology. Analysis was performed at 170 days post infection, a timepoint that coincides with se...

ORGANISM(S): Mus musculus

2005-05-01 | E-MEXP-284 | biostudies-arrayexpress

The Revised National Alzheimer's Coordinating Center's Neuropathology Form-Available Data and New Analyses.

Not available

S-EPMC6044344 | biostudies-literature

Fibrin drives thromboinflammation and neuropathology in COVID-19 [Lung]

PRJNA1118777 | ENA

Multiomic neuropathology improves diagnostic accuracy in pediatric neuro-oncology

PRJNA889441 | ENA

A neuronal DNA damage response is detected at the earliest stages of Alzheimer's neuropathology and correlates with cognitive impairment in the Medical Research Council's Cognitive Function and Ageing Study ageing brain cohort.

Not available

S-EPMC4861215 | biostudies-literature