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TranscriptomicsTiling array hybridizations of genomic DNA from Bacillus subtilis 168.
Genomic DNA prepared from B. subtilis 168 cells grown to stationary phase was hybridized to tiling arrays. The data are used in transcriptome studies to compute expression intensities from raw intensity data using a model of shift and drift and correcting for probe affinity variations as described i...
ORGANISM(S): Bacillus subtilis subsp. subtilis str. 168 
2012-03-07 | E-GEOD-27419 | biostudies-arrayexpress
TranscriptomicsThe condition-dependent transcriptome of Bacillus subtilis 168
Recent studies revealed the unsuspected complexity of the bacterial transcriptome but its systematic analysis across many diverse conditions remains a challenge. Here we report the condition-dependent transcriptome of the prototype strain B. subtilis 168 across 104 conditions reflecting the bacteriu...
ORGANISM(S): Bacillus subtilis subsp. subtilis str. 168 
2012-03-07 | E-GEOD-27219 | biostudies-arrayexpress
UnknownDrug characteristics derived from kinetic modeling: combined 11C-UCB-J human PET imaging with levetiracetam and brivaracetam occupancy of SV2A.
Not available
S-EPMC9643320 | biostudies-literature
ProteomicsComparative analysis of four- and seven-day-old Arabidopsis thaliana plasmodesmata fractions using label free method
To compare four- and seven-day-old Arabidopsis thaliana plasmodesmata proteome, the identification and the relative amount of proteins in plasmodesmata, cell wall and total cell extracts were performed using fractions purified from four- and seven-day-old liquid culture cells of A. thaliana. The rel...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2019-07-05 | PXD006806 | Pride
Arabidopsis thaliana  plasmodesmata  proteomics  label-free 
ProteomicsEstablishment of plasmodesmata core proteome using label free semi-quantitative proteomic analysis.
To establish the plasmodesmata core proteome, the identification and the relative amount of proteins in different cellular fractions, namely, the plasmodesmata, plasma membrane, total cell extract, microsomal and cell wall fractions, were determined using label-free quantification method. Four to si...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2019-07-05 | PXD006800 | Pride
Arabidopsis thaliana Label-free Plasmodesmata Proteomics 
TranscriptomicsTranscriptome analysis of a Bacillus subtilis mutant defective in the transcription termination factor Rho.
This analysis is part of the study GSE27219, The condition-dependent transcriptome of Bacillus subtilis 168. In this study, 120 transcription units where identified for which transcription did not terminate at any specific site, leading to mRNA extension over long distances with slowly decreasing si...
ORGANISM(S): Bacillus subtilis 
2012-03-07 | E-GEOD-27303 | biostudies-arrayexpress
TranscriptomicsTranscriptome analysis of the WalKR regulon in Staphylococcus aureus
The WalKR regulon was studied by comparing genes expression in a strain producing a constitutively active WalR regulator (WalRc) versus the wild type strain carrying the empty expression vector. Hybridizations were performed with three independent biological replicates. Our data allowed to identify ...
ORGANISM(S): Staphylococcus aureus 
2012-09-13 | E-GEOD-29337 | biostudies-arrayexpress
UnknownNon-aversive Animal Restraint Enabling Recording of Optomotor Reflex in Ground Squirrels.
Not available
S-EPMC12403201 | biostudies-literature
TranscriptomicsSAGE analysis of wild-type mouse brain regions
SAGE libraries generated from various brain regions of 8- to 12-week-old male C57BL/6 mice. Keywords: Micro-dissection, Brain regions, SAGE Sau3A I was used as the anchoring enzyme and Bsmf I as the tagging enzyme. Data are provided after linker removal.
ORGANISM(S): Mus musculus 
2008-02-05 | E-GEOD-7594 | biostudies-arrayexpress
UnknownFecal Microbial Composition and Predicted Functional Profile in Irritable Bowel Syndrome Differ between Subtypes and Geographical Locations.
Not available
S-EPMC10608977 | biostudies-literature
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